^{version
1.0}

IslandPath Analysis: Orientia tsutsugamushi str. Ikeda

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 3.15

Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
423	 29.17	0	440441..440800	-	119	189183330	-	OTT_0423	-	transposase
424	 28.91	0	441094..441975	-	293	189183331	spo0J	OTT_0424	-	Spo0J protein
425	 29.95	0	441987..442784	-	265	189183332	soj	OTT_0425	-	Soj protein
426	 24.96	-2	442791..443387	-	198	189183333	gidB	OTT_0426	-	glucose inhibited division protein B
427	 25.26	-1	443533..444300	+	255	189183334	tatC	OTT_0427	-	sec-independent protein translocase protein TatC
428	 31.32	0	444278..445567	+	429	189183335	serS	OTT_0428	-	seryl-tRNA synthetase
429	 28.09	-1	445569..446426	-	285	189183336	-	OTT_0429	-	hypothetical protein
430	 27.20	-1	446793..448325	+	510	189183337	tlc2	OTT_0430	-	ADP,ATP carrier protein homolog
431	 30.22	0	448378..451047	+	889	189183338	mutS	OTT_0431	-	DNA mismatch repair protein MutS
432	 28.91	0	451126..452052	+	308	189183339	secF	OTT_0432	-	protein-export membrane protein SecF
433	 30.56	0	452468..453115	-	215	189183340	-	OTT_0433	-	transposase
434	 28.84	0	454018..454284	+	88	189183341	-	OTT_0434	-	transposase
435	 28.74	0	454471..454731	-	86	189183342	prfB	OTT_0435	-	peptide chain release factor RF-2
436	 30.51	0	454856..455599	-	247	189183343	-	OTT_0436	-	alpha/beta hydrolase superfamily protein
437	 32.32	0	456541..456738	-	65	189183344	-	OTT_0437	-	RelA/SpoT-related protein
438	 30.77	0	456995..457852	-	285	189183345	-	OTT_0438	-	hypothetical protein
439	 28.53	0	457874..458602	-	242	189183346	-	OTT_0439	-	hypothetical protein
440	 30.68	0	459503..461008	+	501	189183347	-	OTT_0440	-	repeat-containing protein B
441	 29.07	0	462136..462768	+	210	189183348	-	OTT_0441	-	N6 adenine-specific DNA-methyltransferase
442	 29.02	0	462954..463997	-	347	189183349	-	OTT_0442	-	hypothetical protein
443	 25.36	-1	465724..465861	+	45	189183350	-	OTT_0443	-	hypothetical protein
444	 30.15	0	466557..467531	-	324	189183351	-	OTT_0444	-	hypothetical protein
445	 30.77	0	467653..467808	-	51	189183352	-	OTT_0445	-	RelA/SpoT-related protein
446	 31.55	0	467848..468240	-	130	189183353	-	OTT_0446	-	RelA/SpoT-related protein
447	 32.29	0	468367..469329	-	320	189183354	-	OTT_0447	-	transposase
448	 28.68	0	469506..470021	-	171	189183355	-	OTT_0448	-	hypothetical protein
449	 31.18	0	470040..470504	-	154	189183356	-	OTT_0449	-	hypothetical protein
450	 30.49	0	470565..471056	-	163	189183357	-	OTT_0450	-	hypothetical protein
451	 29.45	0	471271..471939	-	222	189183358	-	OTT_0451	-	hypothetical protein
452	 32.16	0	472460..472885	-	141	189183359	-	OTT_0452	-	RelA/SpoT-related protein
453	 32.08	0	473119..474555	-	478	189183360	-	OTT_0453	-	replicative DNA helicase
454	 29.44	0	475774..476955	+	393	189183361	bcr2	OTT_0454	-	drug resistance transporter, Bcr/CflA family protein
455	 27.16	-1	477119..477361	-	80	189183362	-	OTT_0455	-	transposase
456	 38.14	+2	478909..479490	+	193	189183363	-	OTT_0456	-	putative conjugative transfer protein TraU
457	 35.17	+1	480120..480446	+	108	189183364	-	OTT_0457	-	reverse transcriptase
458	 29.82	0	480607..481689	-	360	189183365	-	OTT_0458	-	hypothetical protein
459	 34.64	+1	482167..482853	-	228	189183366	-	OTT_0459	-	ankyrin repeat-containing protein 11
460	 29.62	0	484504..486066	-	520	189183367	sca3	OTT_0460	-	cell surface antigen
461	 29.17	0	486245..486484	+	79	189183368	-	OTT_0461	-	hypothetical protein
462	 27.72	-1	486910..487176	-	88	189183369	-	OTT_0462	-	hypothetical protein
463	 30.98	0	487195..488385	-	396	189183370	-	OTT_0463	-	hypothetical protein
464	 30.26	0	488519..490306	-	595	189183371	-	OTT_0464	-	hypothetical protein
465	 25.52	-1	491052..491243	+	63	189183372	-	OTT_0465	-	hypothetical protein
466	 32.95	0	491475..491735	+	86	189183373	-	OTT_0466	-	hypothetical protein
467	 29.27	0	491777..492145	+	122	189183374	-	OTT_0467	-	hypothetical protein
468	 31.87	0	492154..492633	+	159	189183375	-	OTT_0468	-	replicative DNA helicase
469	 31.90	0	493675..494022	-	115	189183376	-	OTT_0469	-	repeat-containing protein A_02
470	 27.20	-1	494588..494962	+	124	189183377	-	OTT_0470	-	transposase
471	 31.11	0	494949..495083	+	44	189183378	-	OTT_0471	-	transposase
472	 28.80	0	495140..495514	+	124	189183379	-	OTT_0472	-	transposase
473	 29.98	0	495501..496007	+	168	189183380	-	OTT_0473	-	transposase
474	 31.40	0	496971..497747	+	258	189183381	-	OTT_0474	-	hypothetical protein
475	 31.87	0	498155..499177	+	340	189183382	-	OTT_0475	-	putative integrase
476	 39.60	+2	499717..500019	-	100	189183383	-	OTT_0476	-	hypothetical protein
477	 33.95	0	500003..501142	+	379	189183384	-	OTT_0477	-	reverse transcriptase
478	 32.00	0	501636..501785	+	49	189183385	-	OTT_0478	-	hypothetical protein
479	 30.56	0	501785..501928	+	47	189183386	-	OTT_0479	-	putative conjugative transfer protein TraE
480	 30.86	0	502015..502338	+	107	189183387	-	OTT_0480	-	putative conjugative transfer protein TraE
481	 28.38	0	502335..502637	+	100	189183388	-	OTT_0481	-	hypothetical protein
482	 28.57	0	502637..502741	+	34	189183389	-	OTT_0482	-	hypothetical protein
483	 41.67	+2	502841..503080	+	79	189183390	-	OTT_0483	-	putative conjugative transfer protein TraB
484	 35.56	+1	503043..503312	+	89	189183391	-	OTT_0484	-	putative conjugative transfer protein TraB
485	 30.91	0	503312..503641	+	109	189183392	-	OTT_0485	-	hypothetical protein
486	 36.47	+1	503622..505409	+	595	189183393	-	OTT_0486	-	putative conjugative transfer protein TraC
487	 32.08	0	505323..506360	-	345	189183394	-	OTT_0487	-	ankyrin repeat-containing protein 05_03
488	 38.45	+2	506728..507411	+	227	189183395	-	OTT_0488	-	putative conjugative transfer protein TraU
489	 31.15	0	507496..507816	+	106	189183396	-	OTT_0489	-	putative conjugative transfer protein TrbC
490	 29.93	0	507813..508253	+	146	189183397	-	OTT_0490	-	putative conjugative transfer protein TraN
491	 34.42	0	508304..509503	+	399	189183398	-	OTT_0491	-	putative conjugative transfer protein TraN
492	 35.41	+1	509500..510126	+	208	189183399	-	OTT_0492	-	putative conjugative transfer protein TraF
493	 35.71	+1	510202..511503	+	433	189183400	-	OTT_0493	-	putative conjugative transfer protein TraH
494	 37.20	+1	511503..511838	+	111	189183401	-	OTT_0494	-	putative conjugative transfer protein TraG
495	 32.30	0	512009..512977	+	322	189183402	-	OTT_0495	-	transposase
496	 29.27	0	512993..513583	-	196	189183403	-	OTT_0496	-	putative integrase
497	 30.70	0	514551..515081	+	176	189183404	-	OTT_0497	-	hypothetical protein
498	 27.23	-1	515568..515780	+	70	189183405	-	OTT_0498	-	transposase
499	 27.86	-1	516167..516367	+	66	189183406	-	OTT_0499	-	transposase
500	 32.33	0	516888..517385	-	165	189183407	-	OTT_0500	-	transposase
501	 29.89	0	517545..519695	+	716	189183408	uvrD	OTT_0501	-	DNA helicase II
502	 28.59	0	519687..520445	-	252	189183409	-	OTT_0502	-	transposase
503	 27.12	-1	521541..521894	-	117	189183410	-	OTT_0503	-	transposase
504	 27.92	-1	522050..522880	-	276	189183411	-	OTT_0504	-	hypothetical protein
505	 30.37	0	523699..525150	+	483	189183412	-	OTT_0505	-	sensor histidine kinase/response regulator/transporter hybrid protein
506	 30.22	0	525584..528253	+	889	189183413	polA	OTT_0506	-	DNA polymerase I (POL I)
507	 31.72	0	528319..529683	+	454	189183414	-	OTT_0507	-	GTP-binding protein, Era/Obg family
508	 26.02	-1	529692..530375	+	227	189183415	-	OTT_0508	-	hypothetical protein
509	 25.98	-1	530446..531519	+	357	189183416	-	OTT_0509	-	AFG1-like ATPase
510	 27.68	-1	531512..532165	+	217	189183417	tmk	OTT_0510	-	thymidylate kinase
511	 34.08	0	532310..534178	-	622	189183418	gidA	OTT_0511	-	glucose inhibited division protein A
512	 31.46	0	534818..536101	-	427	189183419	-	OTT_0512	-	hypothetical protein
513	 32.67	0	537149..537298	-	49	189183420	-	OTT_0513	-	putative integrase
514	 32.93	0	538046..539551	-	501	189183421	rho	OTT_0514	-	transcription termination factor Rho
515	 27.21	-1	541040..542068	+	342	189183422	hemE	OTT_0515	-	uroporphyrinogen decarboxylase
516	 27.05	-1	542061..543095	+	344	189183423	hemH	OTT_0516	-	probable ferrochelatase
517	 27.36	-1	543104..543538	+	144	189183424	-	OTT_0517	-	hypothetical protein
518	 31.58	0	543957..544184	+	75	189183425	-	OTT_0518	-	reverse transcriptase
519	 28.48	0	544569..544877	+	102	189183426	-	OTT_0519	-	transposase
520	 30.56	0	545689..545868	-	59	189183427	-	OTT_0520	-	putative conjugative transfer protein TraI
521	 33.74	0	545995..546240	-	81	189183428	-	OTT_0521	-	putative conjugative transfer protein TraI
522	 37.48	+1	546374..546880	-	168	189183429	-	OTT_0522	-	hypothetical protein
31.48	MEAN

3.15	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.