IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
138	 30.86	0	132923..134014	-	363	189183045	-	OTT_0138	-	hypothetical protein
139	 35.87	+1	134167..136215	-	682	189183046	-	OTT_0139	-	putative conjugative transfer protein TraC
140	 31.21	0	136124..136453	-	109	189183047	-	OTT_0140	-	hypothetical protein
141	 33.88	0	136453..136635	-	60	189183048	-	OTT_0141	-	putative conjugative transfer protein TraB
142	 33.96	0	136665..136982	-	105	189183049	-	OTT_0142	-	putative conjugative transfer protein TraE
143	 33.33	0	136982..137131	-	49	189183050	-	OTT_0143	-	hypothetical protein
144	 34.30	0	137625..138764	-	379	189183051	-	OTT_0144	-	reverse transcriptase
145	 39.33	+2	138748..139047	+	99	189183052	-	OTT_0145	-	hypothetical protein
146	 27.52	-1	139367..139624	+	85	189183053	-	OTT_0146	-	hypothetical protein
147	 28.14	-1	140149..140514	-	121	189183054	-	OTT_0147	-	transposase
148	 29.59	0	140645..141232	+	195	189183055	-	OTT_0148	-	RelA/SpoT-related protein
149	 29.23	0	141354..141914	+	186	189183056	-	OTT_0149	-	hypothetical protein
150	 31.94	0	142209..142424	-	71	189183057	-	OTT_0150	-	hypothetical protein
151	 30.64	0	142835..143614	-	259	189183058	-	OTT_0151	-	hypothetical protein
152	 33.33	0	143834..144046	-	70	189183059	-	OTT_0152	-	transposase
153	 30.85	0	144257..144901	-	214	189183060	-	OTT_0153	-	ankyrin repeat-containing protein 03_01
154	 32.61	0	144939..145490	-	183	189183061	-	OTT_0154	-	RelA/SpoT-related protein
155	 35.44	+1	145727..146059	-	110	189183062	-	OTT_0155	-	replicative DNA helicase
156	 31.32	0	146123..146965	-	280	189183063	-	OTT_0156	-	hypothetical protein
157	 28.33	-1	147094..147852	-	252	189183064	-	OTT_0157	-	hypothetical protein
158	 29.75	0	147941..148498	+	185	189183065	-	OTT_0158	-	transposase
159	 29.52	0	149576..149680	+	34	189183066	-	OTT_0159	-	transposase
160	 27.98	-1	149692..149934	+	80	189183067	-	OTT_0160	-	transposase
161	 25.66	-1	150404..151798	+	464	189183068	-	OTT_0161	-	hypothetical protein
162	 28.53	0	152846..156073	+	1075	189183069	-	OTT_0162	-	sensor histidine kinase/response regulator/transporter hybrid protein
163	 29.24	0	156678..156848	+	56	189183070	-	OTT_0163	-	transposase
164	 29.86	0	158057..159064	+	335	189183071	trpS	OTT_0164	-	tryptophanyl-tRNA synthetase
165	 31.91	0	159629..159769	-	46	189183072	-	OTT_0165	-	RelA/SpoT-related protein
166	 32.02	0	160184..161632	-	482	189183073	-	OTT_0166	-	replicative DNA helicase
167	 30.15	0	161641..162174	-	177	189183074	-	OTT_0167	-	hypothetical protein
168	 29.44	0	163021..163200	+	59	189183075	-	OTT_0168	-	reverse transcriptase
169	 31.38	0	164258..164770	-	170	189183076	-	OTT_0169	-	hypothetical protein
170	 30.94	0	166062..166856	-	264	189183077	-	OTT_0170	-	ComL-like lipoprotein
171	 21.30	-2	167151..167657	+	168	189183078	lspA	OTT_0171	-	lipoprotein signal peptidase
172	 32.65	0	168769..170226	+	485	189183079	-	OTT_0172	-	putative conjugative transfer protein TraA
173	 32.83	0	170241..171038	+	265	189183080	-	OTT_0173	-	putative conjugative transfer protein TraA
174	 30.36	0	171302..171772	+	156	189183081	-	OTT_0174	-	putative conjugative transfer protein TraI
175	 26.79	-1	171801..172121	+	106	189183082	-	OTT_0175	-	putative conjugative transfer protein TraI
176	 30.65	0	172114..172485	+	123	189183083	-	OTT_0176	-	putative conjugative transfer protein TraI
177	 32.51	0	172509..173597	-	362	189183084	-	OTT_0177	-	putative conjugative transfer protein TraA
178	 35.75	+1	173876..174331	+	151	189183085	-	OTT_0178	-	putative conjugative transfer protein TraD
179	 31.30	0	174373..175158	-	261	189183086	-	OTT_0179	-	exodeoxyribonuclease III
180	 29.89	0	175772..177715	-	647	189183087	-	OTT_0180	-	hypothetical protein
181	 30.02	0	178715..179137	+	140	189183088	-	OTT_0181	-	transposase
182	 32.23	0	179469..181364	+	631	189183089	-	OTT_0182	-	repeat-containing protein A_01
183	 36.88	+1	181490..181771	-	93	189183090	-	OTT_0183	-	replicative DNA helicase, DnaB
184	 28.89	0	181908..182132	-	74	189183091	-	OTT_0184	-	transposase
185	 29.99	0	182339..183085	+	248	189183092	-	OTT_0185	-	transposase
186	 29.86	0	183428..184003	-	191	189183093	-	OTT_0186	-	hypothetical protein
187	 35.75	+1	184092..184547	-	151	189183094	-	OTT_0187	-	putative conjugative transfer protein TraD
188	 33.33	0	184843..184944	+	33	189183095	-	OTT_0188	-	putative conjugative transfer protein TraA
189	 33.33	0	185050..187659	+	869	189183096	-	OTT_0189	-	putative conjugative transfer protein TraA
190	 31.47	0	187990..189060	+	356	189183097	-	OTT_0190	-	putative conjugative transfer protein TraI
191	 31.37	0	189112..189672	+	186	189183098	-	OTT_0191	-	putative transposase
192	 32.30	0	189688..190656	-	322	189183099	-	OTT_0192	-	transposase
193	 32.56	0	190923..191309	+	128	189183100	-	OTT_0193	-	putative integrase
194	 36.73	+1	191374..191667	+	97	189183101	-	OTT_0194	-	hypothetical protein
195	 37.45	+1	192106..192372	+	88	189183102	-	OTT_0195	-	putative conjugative transfer protein TraU
196	 32.33	0	192419..192817	+	132	189183103	-	OTT_0196	-	putative conjugative transfer protein TraN
197	 32.80	0	192854..193039	+	61	189183104	-	OTT_0197	-	putative conjugative transfer protein TraN
198	 30.91	0	193050..193214	+	54	189183105	-	OTT_0198	-	putative conjugative transfer protein TraF
199	 36.80	+1	193211..194104	+	297	189183106	-	OTT_0199	-	putative conjugative transfer protein TraH
200	 29.57	0	194269..194613	+	114	189183107	-	OTT_0200	-	putative conjugative transfer protein TraD
201	 34.19	0	194602..195183	-	193	189183108	-	OTT_0201	-	putative conjugative transfer protein TraD
202	 31.15	0	195143..195601	-	152	189183109	-	OTT_0202	-	putative conjugative transfer protein TraD
203	 35.75	+1	195607..196806	-	399	189183110	-	OTT_0203	-	putative conjugative transfer protein TraG
204	 32.30	0	196889..197857	-	322	189183111	-	OTT_0204	-	transposase
205	 38.39	+2	198028..198363	-	111	189183112	-	OTT_0205	-	putative conjugative transfer protein TraG
206	 32.71	0	198363..198842	-	159	189183113	-	OTT_0206	-	putative conjugative transfer protein TraH
207	 36.94	+1	198772..199437	-	221	189183114	-	OTT_0207	-	putative conjugative transfer protein TraH
208	 35.37	+1	199519..199665	-	48	189183115	-	OTT_0208	-	putative conjugative transfer protein TraH
209	 34.16	0	199662..200384	-	240	189183116	-	OTT_0209	-	putative conjugative transfer protein TraF
210	 31.64	0	200588..201766	-	392	189183117	-	OTT_0210	-	ankyrin repeat-containing protein 04_01
211	 33.57	0	201923..203614	-	563	189183118	-	OTT_0211	-	putative conjugative transfer protein TraN
212	 31.15	0	203611..203931	-	106	189183119	-	OTT_0212	-	putative conjugative transfer protein TrbC
213	 38.45	+2	204016..204699	-	227	189183120	-	OTT_0213	-	putative conjugative transfer protein TraU
214	 32.08	0	205067..206104	+	345	189183121	-	OTT_0214	-	ankyrin repeat-containing protein 05_01
215	 35.97	+1	206018..207874	-	618	189183122	-	OTT_0215	-	putative conjugative transfer protein TraC
216	 30.91	0	207786..208115	-	109	189183123	-	OTT_0216	-	hypothetical protein
217	 35.56	+1	208115..208384	-	89	189183124	-	OTT_0217	-	putative conjugative transfer protein TraB
218	 36.75	+1	208347..209165	-	272	189183125	-	OTT_0218	-	putative conjugative transfer protein TraB
219	 33.33	0	209484..209813	-	109	189183126	-	OTT_0219	-	hypothetical protein
220	 28.30	-1	210178..210654	-	158	189183127	-	OTT_0220	-	hypothetical protein
221	 31.34	0	210651..211202	-	183	189183128	-	OTT_0221	-	putative conjugative transfer protein TraE
222	 36.61	+1	211202..211537	-	111	189183129	-	OTT_0222	-	hypothetical protein
223	 29.85	0	212022..212912	-	296	189183130	-	OTT_0223	-	putative integrase
224	 30.00	0	213349..213648	+	99	189183131	-	OTT_0224	-	hypothetical protein
225	 36.55	+1	213629..215431	+	600	189183132	-	OTT_0225	-	putative conjugative transfer protein TraC
226	 33.23	0	215330..216340	-	336	189183133	-	OTT_0226	-	ankyrin repeat-containing protein 06_01
227	 37.76	+1	216495..217082	+	195	189183134	-	OTT_0227	-	putative conjugative transfer protein TraU
228	 31.46	0	217167..217487	+	106	189183135	-	OTT_0228	-	putative conjugative transfer protein TrbC
229	 31.77	0	217484..218251	+	255	189183136	-	OTT_0229	-	putative conjugative transfer protein TraN
230	 34.60	0	218540..219172	+	210	189183137	-	OTT_0230	-	putative conjugative transfer protein TraN
231	 26.97	-1	219424..220932	+	502	189183138	-	OTT_0231	-	TPR repeat-containing protein 03
232	 33.78	0	221043..221489	+	148	189183139	-	OTT_0232	-	hypothetical protein
233	 34.74	+1	221766..222332	+	188	189183140	-	OTT_0233	-	putative conjugative transfer protein TraF
234	 30.81	0	222612..222809	-	65	189183141	-	OTT_0234	-	transposase
235	 29.22	0	223065..223721	-	218	189183142	-	OTT_0235	-	hypothetical protein
236	 29.44	0	223718..224077	-	119	189183143	-	OTT_0236	-	ankyrin repeat-containing protein 03_02
237	 29.39	0	224310..224588	-	92	189183144	-	OTT_0237	-	ankyrin repeat-containing protein 03_03
31.48	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.