IslandPathversion 1.0

IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1778	 32.62	0	1804127..1804963	+	278	189184685	hemF	OTT_1778	-	coproporphyrinogen III oxidase precursor
1779	 35.67	+1	1805103..1805444	+	113	189184686	-	OTT_1779	-	hypothetical protein
1780	 28.47	0	1806032..1806463	-	143	189184687	-	OTT_1780	-	transposase
1781	 28.57	0	1807476..1808021	+	181	189184688	-	OTT_1781	-	putative integrase
1782	 29.52	0	1808376..1808585	+	69	189184689	-	OTT_1782	-	putative integrase
1783	 28.68	0	1808750..1809673	-	307	189184690	-	OTT_1783	-	putative integrase
1784	 28.57	0	1810607..1810774	-	55	189184691	-	OTT_1784	-	hypothetical protein
1785	 34.68	+1	1810904..1811125	-	73	189184692	-	OTT_1785	-	hypothetical protein
1786	 31.56	0	1811401..1811625	-	74	189184693	rpmE	OTT_1786	-	50S ribosomal protein L31
1787	 28.82	0	1811635..1811922	-	95	189184694	rpmB	OTT_1787	-	50S ribosomal protein L28
1788	 27.72	-1	1812167..1813039	+	290	189184695	-	OTT_1788	-	hypothetical protein
1789	 30.63	0	1813057..1814313	+	418	189184696	proP1	OTT_1789	-	proline/betaine transporter
1790	 35.99	+1	1815042..1815794	+	250	189184697	-	OTT_1790	-	hypothetical protein
1791	 29.79	0	1816173..1817384	-	403	189184698	pbpE	OTT_1791	-	penicillin-binding protein 4
1792	 34.00	0	1817410..1819203	-	597	189184699	aspS	OTT_1792	-	asparaginyl-tRNA synthetase
1793	 34.50	0	1819467..1823657	-	1396	189184700	rpoC	OTT_1793	-	DNA-directed RNA polymerase beta prime chain
1794	 33.45	0	1823774..1827898	-	1374	189184701	rpoB	OTT_1794	-	DNA-directed RNA polymerase beta chain
1795	 33.08	0	1828214..1828603	-	129	189184702	rplL	OTT_1795	-	50S ribosomal protein L7/L12
1796	 30.98	0	1828625..1829134	-	169	189184703	rplJ	OTT_1796	-	50S ribosomal protein L10
1797	 32.67	0	1829138..1829887	-	249	189184704	rplA	OTT_1797	-	50S ribosomal protein L1
1798	 33.78	0	1829891..1830337	-	148	189184705	rplK	OTT_1798	-	50S ribosomal protein L11
1799	 31.47	0	1830377..1830913	-	178	189184706	nusG	OTT_1799	-	transcription antitermination protein NusG
1800	 31.34	0	1830956..1831156	-	66	189184707	secE	OTT_1800	-	preprotein translocase SecE subunit
1801	 37.55	+1	1831420..1832604	-	394	189184708	tuf	OTT_1801	-	elongation factor EF-Tu
1802	 31.50	0	1832777..1833541	-	254	189184709	plsC	OTT_1802	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1803	 31.54	0	1833658..1834269	-	203	189184710	recR	OTT_1803	-	recombination protein RecR
1804	 29.80	0	1834357..1834893	-	178	189184711	-	OTT_1804	-	putative intracellular septation protein
1805	 30.48	0	1834897..1835736	-	279	189184712	-	OTT_1805	-	high-affinity Fe2+/Pb2+ permease
1806	 31.69	0	1835765..1836130	-	121	189184713	-	OTT_1806	-	hypothetical protein
1807	 29.20	0	1836596..1837828	-	410	189184714	-	OTT_1807	-	hypothetical protein
1808	 31.28	0	1838014..1838745	-	243	189184715	glnQ	OTT_1808	-	glutamine ABC transporter ATP-binding protein GlnQ
1809	 27.83	-1	1838738..1839355	-	205	189184716	glnP	OTT_1809	-	probable glutamine transport system permease protein GlnP
1810	 29.06	0	1840418..1840651	+	77	189184717	-	OTT_1810	-	transposase
1811	 29.26	0	1840780..1841172	+	130	189184718	-	OTT_1811	-	transposase
1812	 30.34	0	1843889..1844155	+	88	189184719	-	OTT_1812	-	putative integrase
1813	 29.08	0	1845397..1845678	+	93	189184720	-	OTT_1813	-	transposase
1814	 33.24	0	1846220..1847338	+	372	189184721	-	OTT_1814	-	putative integrase
1815	 36.61	+1	1847464..1847799	+	111	189184722	-	OTT_1815	-	hypothetical protein
1816	 31.34	0	1847799..1848350	+	183	189184723	-	OTT_1816	-	putative conjugative transfer protein TraE
1817	 28.30	-1	1848347..1848823	+	158	189184724	-	OTT_1817	-	hypothetical protein
1818	 33.04	0	1849188..1849523	+	111	189184725	-	OTT_1818	-	hypothetical protein
1819	 34.91	+1	1849577..1850911	+	444	189184726	-	OTT_1819	-	putative conjugative transfer protein TraB
1820	 30.61	0	1850911..1851204	+	97	189184727	-	OTT_1820	-	hypothetical protein
1821	 36.22	+1	1851185..1853674	+	829	189184728	-	OTT_1821	-	putative conjugative transfer protein TraC
1822	 34.09	0	1853671..1854330	+	219	189184729	-	OTT_1822	-	putative conjugative transfer protein TraW
1823	 30.88	0	1854416..1854619	+	67	189184730	-	OTT_1823	-	hypothetical protein
1824	 39.06	+2	1854623..1855600	+	325	189184731	-	OTT_1824	-	putative conjugative transfer protein TraU
1825	 30.47	0	1855623..1856006	+	127	189184732	-	OTT_1825	-	putative conjugative transfer protein TrbC
1826	 33.92	0	1856003..1857697	+	564	189184733	-	OTT_1826	-	putative conjugative transfer protein TraN
1827	 34.75	+1	1857694..1858398	+	234	189184734	-	OTT_1827	-	putative conjugative transfer protein TraF
1828	 37.47	+1	1858395..1859288	+	297	189184735	-	OTT_1828	-	putative conjugative transfer protein TraH
1829	 32.50	0	1859218..1859697	+	159	189184736	-	OTT_1829	-	putative conjugative transfer protein TraH
1830	 35.08	+1	1859697..1862324	+	875	189184737	-	OTT_1830	-	putative conjugative transfer protein TraG
1831	 27.72	-1	1862337..1863476	+	379	189184738	-	OTT_1831	-	TPR repeat-containing protein 01_10
1832	 32.88	0	1863476..1865230	+	584	189184739	-	OTT_1832	-	putative conjugative transfer protein TraD
1833	 32.75	0	1865232..1866251	-	339	189184740	-	OTT_1833	-	putative transposase
1834	 33.30	0	1866236..1868908	-	890	189184741	-	OTT_1834	-	putative conjugative transfer protein TraI
1835	 33.92	0	1869177..1871543	-	788	189184742	-	OTT_1835	-	putative conjugative transfer protein TraA
1836	 33.58	0	1871607..1872005	-	132	189184743	-	OTT_1836	-	putative conjugative transfer protein TraA
1837	 36.18	+1	1872300..1872755	+	151	189184744	-	OTT_1837	-	putative conjugative transfer protein TraD
1838	 29.62	0	1872823..1873737	-	304	189184745	-	OTT_1838	-	hypothetical protein
1839	 29.19	0	1873948..1874454	-	168	189184746	-	OTT_1839	-	transposase
1840	 31.22	0	1874596..1874784	-	62	189184747	-	OTT_1840	-	transposase
1841	 28.06	-1	1875085..1875672	+	195	189184748	-	OTT_1841	-	transposase
1842	 30.47	0	1876110..1877228	-	372	189184749	-	OTT_1842	-	hypothetical protein
1843	 27.20	-1	1877760..1878134	+	124	189184750	-	OTT_1843	-	transposase
1844	 31.11	0	1878121..1878255	+	44	189184751	-	OTT_1844	-	transposase
1845	 28.80	0	1878312..1878686	+	124	189184752	-	OTT_1845	-	transposase
1846	 29.59	0	1878673..1879179	+	168	189184753	-	OTT_1846	-	transposase
1847	 30.30	0	1879128..1879721	-	197	189184754	-	OTT_1847	-	RelA/SpoT-related protein
1848	 30.19	0	1879857..1880714	-	285	189184755	-	OTT_1848	-	hypothetical protein
1849	 28.52	0	1880698..1881465	-	255	189184756	-	OTT_1849	-	hypothetical protein
1850	 30.75	0	1881822..1882634	+	270	189184757	-	OTT_1850	-	N6 adenine-specific DNA-methyltransferase
1851	 31.18	0	1882638..1883147	-	169	189184758	-	OTT_1851	-	hypothetical protein
1852	 31.02	0	1883248..1883895	-	215	189184759	-	OTT_1852	-	ankyrin repeat-containing protein 03_15
1853	 31.94	0	1883933..1884508	-	191	189184760	-	OTT_1853	-	RelA/SpoT-related protein
1854	 32.08	0	1884742..1886178	-	478	189184761	-	OTT_1854	-	replicative DNA helicase
1855	 31.04	0	1886203..1887249	-	348	189184762	-	OTT_1855	-	hypothetical protein
1856	 28.65	0	1887436..1887969	-	177	189184763	-	OTT_1856	-	hypothetical protein
1857	 29.35	0	1888079..1888957	-	292	189184764	-	OTT_1857	-	hypothetical protein
1858	 30.20	0	1889359..1890219	+	286	189184765	-	OTT_1858	-	transposase
1859	 30.89	0	1893427..1894326	+	299	189184766	-	OTT_1859	-	hypothetical protein
1860	 32.09	0	1894494..1895375	+	293	189184767	-	OTT_1860	-	hypothetical protein
1861	 27.04	-1	1895800..1896117	-	105	189184768	-	OTT_1861	-	transposase
1862	 29.82	0	1896946..1897884	-	312	189184769	rluC	OTT_1862	-	ribosomal large subunit pseudouridine synthase C
1863	 26.80	-1	1897868..1898740	-	290	189184770	holB	OTT_1863	-	DNA polymerase III delta subunit
1864	 30.49	0	1898764..1899291	-	175	189184771	ppa	OTT_1864	-	inorganic pyrophosphatase
1865	 30.09	0	1899377..1899808	-	143	189184772	dksA	OTT_1865	-	dnaK suppressor protein homolog
1866	 28.97	0	1899843..1900781	-	312	189184773	xerC	OTT_1866	-	integrase/recombinase XerC
1867	 32.89	0	1900807..1902150	-	447	189184774	thdF	OTT_1867	-	tRNA modification GTP-binding protein ThdF (TrmE)
1868	 29.35	0	1902232..1907157	+	1641	189184775	-	OTT_1868	-	NAD-glutamate dehydrogenase
1869	 28.36	0	1908088..1908570	+	160	189184776	-	OTT_1869	-	transposase
1870	 28.51	0	1908574..1910355	-	593	189184777	abcT3	OTT_1870	-	ABC transporter ATP-binding protein
1871	 32.27	0	1910405..1911157	-	250	189184778	pyrH	OTT_1871	-	uridylate kinase
1872	 29.49	0	1911385..1912476	-	363	189184779	mraY	OTT_1872	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
1873	 29.86	0	1912466..1913875	-	469	189184780	murF	OTT_1873	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase
1874	 30.41	0	1913872..1915341	-	489	189184781	murE	OTT_1874	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
1875	 29.05	0	1915328..1917079	-	583	189184782	ftsI	OTT_1875	-	penicillin-binding protein PbpA2
1876	 23.62	-2	1917383..1917691	-	102	189184783	-	OTT_1876	-	hypothetical protein
1877	 29.82	0	1917684..1918622	-	312	189184784	mraW	OTT_1877	-	S-adenosyl-methyltransferase MraW
31.48	MEAN

3.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.