version 1.0
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987 1967 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1746 30.89 0 1770075..1770401 + 108 189184653 rplU OTT_1746 - 50S ribosomal protein L21 1747 32.59 0 1770442..1770711 + 89 189184654 rpmA OTT_1747 - 50S ribosomal protein L27 1748 30.39 0 1772829..1773032 + 67 189184655 - OTT_1748 - transposase 1749 34.64 +1 1775964..1776116 + 50 189184656 - OTT_1749 - putative conjugative transfer protein TraC 1750 32.59 0 1776106..1776240 + 44 189184657 - OTT_1750 - putative conjugative transfer protein TraC 1751 34.96 +1 1777438..1778115 + 225 189184658 - OTT_1751 - putative integrase 1752 36.73 +1 1778253..1778576 + 107 189184659 - OTT_1752 - hypothetical protein 1753 31.70 0 1778576..1779127 + 183 189184660 - OTT_1753 - putative conjugative transfer protein TraE 1754 30.19 0 1779124..1779600 + 158 189184661 - OTT_1754 - hypothetical protein 1755 34.23 0 1779745..1780077 + 110 189184662 - OTT_1755 - hypothetical protein 1756 32.07 0 1780131..1780526 + 131 189184663 - OTT_1756 - putative conjugative transfer protein TraB 1757 29.43 0 1780620..1781003 + 127 189184664 - OTT_1757 - hypothetical protein 1758 28.80 0 1781335..1781709 + 124 189184665 - OTT_1758 - transposase 1759 29.98 0 1781696..1782202 + 168 189184666 - OTT_1759 - transposase 1760 28.32 -1 1782279..1782617 + 112 189184667 - OTT_1760 - transposase 1761 29.55 0 1782823..1783086 + 87 189184668 - OTT_1761 - hypothetical protein 1762 28.57 0 1783128..1783715 + 195 189184669 - OTT_1762 - RelA/SpoT-related protein 1763 31.90 0 1784521..1784730 + 69 189184670 - OTT_1763 - exodeoxyribonuclease III 1764 28.23 -1 1785167..1785715 - 182 189184671 pgsA OTT_1764 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1765 33.33 0 1786278..1786715 - 145 189184672 - OTT_1765 - transposase 1766 33.16 0 1787957..1790218 + 753 189184673 - OTT_1766 - outer membrane protein 1767 31.52 0 1790708..1794355 + 1215 189184674 - OTT_1767 - hypothetical protein 1768 27.99 -1 1794710..1795027 - 105 189184675 - OTT_1768 - transposase 1769 26.67 -1 1795015..1795119 - 34 189184676 - OTT_1769 - transposase 1770 26.75 -1 1795232..1795474 - 80 189184677 - OTT_1770 - transposase 1771 30.11 0 1796361..1797602 - 413 189184678 tyrS OTT_1771 - tyrosyl-tRNA synthetase 1772 30.25 0 1798745..1799101 + 118 189184679 - OTT_1772 - hypothetical protein 1773 29.17 0 1799261..1799476 + 71 189184680 - OTT_1773 - hypothetical protein 1774 34.78 +1 1799686..1800030 + 114 189184681 - OTT_1774 - putative conjugative transfer protein TraC 1775 29.77 0 1800972..1801280 + 102 189184682 - OTT_1775 - transposase 1776 31.26 0 1801406..1802323 - 305 189184683 sohB OTT_1776 - SohB protease 1777 33.04 0 1802614..1803963 + 449 189184684 miaB OTT_1777 - tRNA-methylthiotransferase MiaB protein 1778 32.62 0 1804127..1804963 + 278 189184685 hemF OTT_1778 - coproporphyrinogen III oxidase precursor 1779 35.67 +1 1805103..1805444 + 113 189184686 - OTT_1779 - hypothetical protein 1780 28.47 0 1806032..1806463 - 143 189184687 - OTT_1780 - transposase 1781 28.57 0 1807476..1808021 + 181 189184688 - OTT_1781 - putative integrase 1782 29.52 0 1808376..1808585 + 69 189184689 - OTT_1782 - putative integrase 1783 28.68 0 1808750..1809673 - 307 189184690 - OTT_1783 - putative integrase 1784 28.57 0 1810607..1810774 - 55 189184691 - OTT_1784 - hypothetical protein 1785 34.68 +1 1810904..1811125 - 73 189184692 - OTT_1785 - hypothetical protein 1786 31.56 0 1811401..1811625 - 74 189184693 rpmE OTT_1786 - 50S ribosomal protein L31 1787 28.82 0 1811635..1811922 - 95 189184694 rpmB OTT_1787 - 50S ribosomal protein L28 1788 27.72 -1 1812167..1813039 + 290 189184695 - OTT_1788 - hypothetical protein 1789 30.63 0 1813057..1814313 + 418 189184696 proP1 OTT_1789 - proline/betaine transporter 1790 35.99 +1 1815042..1815794 + 250 189184697 - OTT_1790 - hypothetical protein 1791 29.79 0 1816173..1817384 - 403 189184698 pbpE OTT_1791 - penicillin-binding protein 4 1792 34.00 0 1817410..1819203 - 597 189184699 aspS OTT_1792 - asparaginyl-tRNA synthetase 1793 34.50 0 1819467..1823657 - 1396 189184700 rpoC OTT_1793 - DNA-directed RNA polymerase beta prime chain 1794 33.45 0 1823774..1827898 - 1374 189184701 rpoB OTT_1794 - DNA-directed RNA polymerase beta chain 1795 33.08 0 1828214..1828603 - 129 189184702 rplL OTT_1795 - 50S ribosomal protein L7/L12 1796 30.98 0 1828625..1829134 - 169 189184703 rplJ OTT_1796 - 50S ribosomal protein L10 1797 32.67 0 1829138..1829887 - 249 189184704 rplA OTT_1797 - 50S ribosomal protein L1 1798 33.78 0 1829891..1830337 - 148 189184705 rplK OTT_1798 - 50S ribosomal protein L11 1799 31.47 0 1830377..1830913 - 178 189184706 nusG OTT_1799 - transcription antitermination protein NusG 1800 31.34 0 1830956..1831156 - 66 189184707 secE OTT_1800 - preprotein translocase SecE subunit 1801 37.55 +1 1831420..1832604 - 394 189184708 tuf OTT_1801 - elongation factor EF-Tu 1802 31.50 0 1832777..1833541 - 254 189184709 plsC OTT_1802 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 1803 31.54 0 1833658..1834269 - 203 189184710 recR OTT_1803 - recombination protein RecR 1804 29.80 0 1834357..1834893 - 178 189184711 - OTT_1804 - putative intracellular septation protein 1805 30.48 0 1834897..1835736 - 279 189184712 - OTT_1805 - high-affinity Fe2+/Pb2+ permease 1806 31.69 0 1835765..1836130 - 121 189184713 - OTT_1806 - hypothetical protein 1807 29.20 0 1836596..1837828 - 410 189184714 - OTT_1807 - hypothetical protein 1808 31.28 0 1838014..1838745 - 243 189184715 glnQ OTT_1808 - glutamine ABC transporter ATP-binding protein GlnQ 1809 27.83 -1 1838738..1839355 - 205 189184716 glnP OTT_1809 - probable glutamine transport system permease protein GlnP 1810 29.06 0 1840418..1840651 + 77 189184717 - OTT_1810 - transposase 1811 29.26 0 1840780..1841172 + 130 189184718 - OTT_1811 - transposase 1812 30.34 0 1843889..1844155 + 88 189184719 - OTT_1812 - putative integrase 1813 29.08 0 1845397..1845678 + 93 189184720 - OTT_1813 - transposase 1814 33.24 0 1846220..1847338 + 372 189184721 - OTT_1814 - putative integrase 1815 36.61 +1 1847464..1847799 + 111 189184722 - OTT_1815 - hypothetical protein 1816 31.34 0 1847799..1848350 + 183 189184723 - OTT_1816 - putative conjugative transfer protein TraE 1817 28.30 -1 1848347..1848823 + 158 189184724 - OTT_1817 - hypothetical protein 1818 33.04 0 1849188..1849523 + 111 189184725 - OTT_1818 - hypothetical protein 1819 34.91 +1 1849577..1850911 + 444 189184726 - OTT_1819 - putative conjugative transfer protein TraB 1820 30.61 0 1850911..1851204 + 97 189184727 - OTT_1820 - hypothetical protein 1821 36.22 +1 1851185..1853674 + 829 189184728 - OTT_1821 - putative conjugative transfer protein TraC 1822 34.09 0 1853671..1854330 + 219 189184729 - OTT_1822 - putative conjugative transfer protein TraW 1823 30.88 0 1854416..1854619 + 67 189184730 - OTT_1823 - hypothetical protein 1824 39.06 +2 1854623..1855600 + 325 189184731 - OTT_1824 - putative conjugative transfer protein TraU 1825 30.47 0 1855623..1856006 + 127 189184732 - OTT_1825 - putative conjugative transfer protein TrbC 1826 33.92 0 1856003..1857697 + 564 189184733 - OTT_1826 - putative conjugative transfer protein TraN 1827 34.75 +1 1857694..1858398 + 234 189184734 - OTT_1827 - putative conjugative transfer protein TraF 1828 37.47 +1 1858395..1859288 + 297 189184735 - OTT_1828 - putative conjugative transfer protein TraH 1829 32.50 0 1859218..1859697 + 159 189184736 - OTT_1829 - putative conjugative transfer protein TraH 1830 35.08 +1 1859697..1862324 + 875 189184737 - OTT_1830 - putative conjugative transfer protein TraG 1831 27.72 -1 1862337..1863476 + 379 189184738 - OTT_1831 - TPR repeat-containing protein 01_10 1832 32.88 0 1863476..1865230 + 584 189184739 - OTT_1832 - putative conjugative transfer protein TraD 1833 32.75 0 1865232..1866251 - 339 189184740 - OTT_1833 - putative transposase 1834 33.30 0 1866236..1868908 - 890 189184741 - OTT_1834 - putative conjugative transfer protein TraI 1835 33.92 0 1869177..1871543 - 788 189184742 - OTT_1835 - putative conjugative transfer protein TraA 1836 33.58 0 1871607..1872005 - 132 189184743 - OTT_1836 - putative conjugative transfer protein TraA 1837 36.18 +1 1872300..1872755 + 151 189184744 - OTT_1837 - putative conjugative transfer protein TraD 1838 29.62 0 1872823..1873737 - 304 189184745 - OTT_1838 - hypothetical protein 1839 29.19 0 1873948..1874454 - 168 189184746 - OTT_1839 - transposase 1840 31.22 0 1874596..1874784 - 62 189184747 - OTT_1840 - transposase 1841 28.06 -1 1875085..1875672 + 195 189184748 - OTT_1841 - transposase 1842 30.47 0 1876110..1877228 - 372 189184749 - OTT_1842 - hypothetical protein 1843 27.20 -1 1877760..1878134 + 124 189184750 - OTT_1843 - transposase 1844 31.11 0 1878121..1878255 + 44 189184751 - OTT_1844 - transposase 1845 28.80 0 1878312..1878686 + 124 189184752 - OTT_1845 - transposase 31.48 MEAN 3.15 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0