IslandPathversion 1.0

IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.48 STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1419	 28.27	-1	1454740..1454976	-	78	189184326	-	OTT_1419	-	hypothetical protein
1420	 31.43	0	1455104..1455418	-	104	189184327	-	OTT_1420	-	putative conjugative transfer protein TraE
1421	 29.33	0	1456748..1457047	+	99	189184328	-	OTT_1421	-	hypothetical protein
1422	 28.82	0	1457395..1457682	-	95	189184329	-	OTT_1422	-	quinone oxidoreductase
1423	 30.02	0	1457941..1459086	-	381	189184330	-	OTT_1423	-	quinone oxidoreductase
1424	 29.77	0	1459397..1459789	+	130	189184331	ccmE	OTT_1424	-	cytochrome c-type biogenesis protein CcmE
1425	 25.25	-1	1459823..1460737	+	304	189184332	-	OTT_1425	-	hypothetical protein
1426	 30.59	0	1460734..1461207	+	157	189184333	-	OTT_1426	-	putative Hollyday junction resolvase
1427	 32.31	0	1461221..1462984	+	587	189184334	recJ	OTT_1427	-	single-stranded-DNA-specific exonuclease
1428	 28.70	0	1463293..1464048	-	251	189184335	mkl	OTT_1428	-	ribonucleotide ABC transporter ATP-binding protein
1429	 30.57	0	1464077..1464943	-	288	189184336	-	OTT_1429	-	toluene export ABC transporter permease protein
1430	 30.05	0	1464982..1465773	-	263	189184337	-	OTT_1430	-	hypothetical protein
1431	 34.94	+1	1465900..1466523	+	207	189184338	rpsD	OTT_1431	-	30S ribosomal protein S4
1432	 28.25	-1	1466501..1466815	+	104	189184339	-	OTT_1432	-	hypothetical protein
1433	 36.78	+1	1466998..1467084	+	28	189184340	-	OTT_1433	-	putative conjugative transfer protein TraB
1434	 38.29	+2	1467309..1467752	+	147	189184341	-	OTT_1434	-	putative conjugative transfer protein TraU
1435	 31.69	0	1467819..1468001	+	60	189184342	-	OTT_1435	-	putative conjugative transfer protein TraN
1436	 33.90	0	1468005..1468358	+	117	189184343	-	OTT_1436	-	putative conjugative transfer protein TraH
1437	 33.82	0	1468288..1468695	+	135	189184344	-	OTT_1437	-	putative conjugative transfer protein TraG
1438	 33.27	0	1468849..1470384	+	511	189184345	-	OTT_1438	-	putative conjugative transfer protein TraD
1439	 34.85	+1	1470394..1470855	-	153	189184346	-	OTT_1439	-	putative transposase
1440	 32.29	0	1471072..1472034	+	320	189184347	-	OTT_1440	-	transposase
1441	 30.84	0	1472050..1472610	-	186	189184348	-	OTT_1441	-	putative transposase
1442	 32.05	0	1472662..1474224	-	520	189184349	-	OTT_1442	-	putative conjugative transfer protein TraI
1443	 34.97	+1	1474565..1475299	-	244	189184350	-	OTT_1443	-	repeat-containing protein E_02
1444	 33.40	0	1475436..1478240	-	934	189184351	-	OTT_1444	-	putative conjugative transfer protein TraA
1445	 35.31	+1	1478534..1478989	+	151	189184352	-	OTT_1445	-	putative conjugative transfer protein TraD
1446	 31.03	0	1479068..1480066	-	332	189184353	-	OTT_1446	-	hypothetical protein
1447	 30.03	0	1480188..1480763	-	191	189184354	-	OTT_1447	-	RelA/SpoT-related protein
1448	 30.30	0	1480864..1481721	-	285	189184355	-	OTT_1448	-	hypothetical protein
1449	 28.94	0	1481743..1482471	-	242	189184356	-	OTT_1449	-	hypothetical protein
1450	 27.75	-1	1482821..1483537	-	238	189184357	-	OTT_1450	-	hypothetical protein
1451	 32.66	0	1484740..1485036	+	98	189184358	-	OTT_1451	-	N6 adenine-specific DNA-methyltransferase
1452	 30.34	0	1485052..1485552	-	166	189184359	-	OTT_1452	-	hypothetical protein
1453	 31.01	0	1485654..1486298	-	214	189184360	-	OTT_1453	-	ankyrin repeat-containing protein 03_11
1454	 31.82	0	1486336..1486731	-	131	189184361	-	OTT_1454	-	RelA/SpoT-related protein
1455	 28.72	0	1487257..1487646	+	129	189184362	-	OTT_1455	-	transposase
1456	 33.33	0	1488476..1490290	+	604	189184363	nrdA	OTT_1456	-	ribonucleoside-diphosphate reductase alpha chain
1457	 31.57	0	1490268..1491347	+	359	189184364	nrdB	OTT_1457	-	ribonucleoside-diphosphate reductase beta chain
1458	 28.21	-1	1491796..1492146	+	116	189184365	-	OTT_1458	-	hypothetical protein
1459	 27.19	-1	1492516..1492743	+	75	189184366	-	OTT_1459	-	putative integrase
1460	 30.06	0	1492841..1494550	+	569	189184367	abcT2	OTT_1460	-	ABC transporter ATP-binding protein
1461	 25.86	-1	1494519..1494866	+	115	189184368	-	OTT_1461	-	hypothetical protein
1462	 33.33	0	1494983..1495195	+	70	189184369	-	OTT_1462	-	hypothetical protein
1463	 34.88	+1	1495824..1495952	+	42	189184370	-	OTT_1463	-	replicative DNA helicase
1464	 31.68	0	1495966..1497420	+	484	189184371	-	OTT_1464	-	replicative DNA helicase
1465	 31.54	0	1497782..1498282	+	166	189184372	-	OTT_1465	-	ankyrin repeat-containing protein 03_12
1466	 31.94	0	1498380..1498883	+	167	189184373	-	OTT_1466	-	hypothetical protein
1467	 29.75	0	1498887..1499696	-	269	189184374	-	OTT_1467	-	N6 adenine-specific DNA-methyltransferase
1468	 29.03	0	1500063..1500341	+	92	189184375	-	OTT_1468	-	hypothetical protein
1469	 27.88	-1	1500406..1500900	+	164	189184376	-	OTT_1469	-	hypothetical protein
1470	 31.64	0	1500931..1501107	+	58	189184377	-	OTT_1470	-	hypothetical protein
1471	 29.98	0	1501322..1501828	-	168	189184378	-	OTT_1471	-	transposase
1472	 28.80	0	1501815..1502189	-	124	189184379	-	OTT_1472	-	transposase
1473	 30.95	0	1502254..1502757	+	167	189184380	-	OTT_1473	-	hypothetical protein
1474	 30.63	0	1502780..1503001	+	73	189184381	-	OTT_1474	-	hypothetical protein
1475	 31.09	0	1502998..1503264	+	88	189184382	-	OTT_1475	-	hypothetical protein
1476	 33.90	0	1503712..1503888	+	58	189184383	-	OTT_1476	-	N6 adenine-specific DNA-methyltransferase
1477	 30.70	0	1504318..1504734	+	138	189184384	-	OTT_1477	-	RelA/SpoT-related protein
1478	 30.45	0	1505350..1506078	+	242	189184385	-	OTT_1478	-	ankyrin repeat-containing protein 17
1479	 36.18	+1	1506132..1506587	-	151	189184386	-	OTT_1479	-	putative conjugative transfer protein TraD
1480	 32.93	0	1506773..1508752	+	659	189184387	-	OTT_1480	-	putative conjugative transfer protein TraA
1481	 28.52	0	1508974..1510758	-	594	189184388	-	OTT_1481	-	hypothetical protein
1482	 30.91	0	1511405..1512475	+	356	189184389	-	OTT_1482	-	putative conjugative transfer protein TraI
1483	 33.24	0	1512460..1513488	+	342	189184390	-	OTT_1483	-	putative transposase
1484	 32.76	0	1513498..1515252	-	584	189184391	-	OTT_1484	-	putative conjugative transfer protein TraD
1485	 28.88	0	1515258..1516403	-	381	189184392	-	OTT_1485	-	TPR repeat-containing protein 01_09
1486	 35.33	+1	1516419..1518770	-	783	189184393	-	OTT_1486	-	putative conjugative transfer protein TraG
1487	 32.29	0	1518853..1519815	-	320	189184394	-	OTT_1487	-	transposase
1488	 37.50	+1	1519992..1520327	-	111	189184395	-	OTT_1488	-	putative conjugative transfer protein TraG
1489	 32.72	0	1520327..1520812	-	161	189184396	-	OTT_1489	-	putative conjugative transfer protein TraH
1490	 36.83	+1	1521001..1521630	-	209	189184397	-	OTT_1490	-	putative conjugative transfer protein TraH
1491	 35.34	+1	1521627..1522325	-	232	189184398	-	OTT_1491	-	putative conjugative transfer protein TraF
1492	 34.91	+1	1522322..1522957	-	211	189184399	-	OTT_1492	-	putative conjugative transfer protein TraN
1493	 31.77	0	1523246..1524013	-	255	189184400	-	OTT_1493	-	putative conjugative transfer protein TraN
1494	 30.47	0	1524010..1524393	-	127	189184401	-	OTT_1494	-	putative conjugative transfer protein TrbC
1495	 38.27	+2	1524416..1525003	-	195	189184402	-	OTT_1495	-	putative conjugative transfer protein TraU
1496	 33.23	0	1525158..1526168	+	336	189184403	-	OTT_1496	-	ankyrin repeat-containing protein 06_03
1497	 35.74	+1	1526067..1527938	-	623	189184404	-	OTT_1497	-	putative conjugative transfer protein TraC
1498	 30.91	0	1527850..1528179	-	109	189184405	-	OTT_1498	-	hypothetical protein
1499	 35.56	+1	1528179..1528448	-	89	189184406	-	OTT_1499	-	putative conjugative transfer protein TraB
1500	 36.75	+1	1528411..1529229	-	272	189184407	-	OTT_1500	-	putative conjugative transfer protein TraB
1501	 33.33	0	1529548..1529877	-	109	189184408	-	OTT_1501	-	hypothetical protein
1502	 28.30	-1	1530242..1530718	-	158	189184409	-	OTT_1502	-	hypothetical protein
1503	 31.34	0	1530715..1531266	-	183	189184410	-	OTT_1503	-	putative conjugative transfer protein TraE
1504	 36.90	+1	1531266..1531601	-	111	189184411	-	OTT_1504	-	hypothetical protein
1505	 34.45	0	1531727..1532173	-	148	189184412	-	OTT_1505	-	putative integrase
1506	 31.25	0	1532198..1532773	-	191	189184413	-	OTT_1506	-	putative integrase
1507	 27.12	-1	1533355..1533837	-	160	189184414	-	OTT_1507	-	transposase
1508	 29.73	0	1533945..1535111	-	388	189184415	-	OTT_1508	-	hypothetical protein
1509	 29.28	0	1535130..1536386	-	418	189184416	-	OTT_1509	-	ankyrin repeat-containing protein 07_02
1510	 32.51	0	1538557..1539654	-	365	189184417	-	OTT_1510	-	putative N-acetylmuramoyl-L-alanine amidase
1511	 27.55	-1	1540330..1542075	+	581	189184418	-	OTT_1511	-	repeat-containing protein G
1512	 29.91	0	1543127..1543243	+	38	189184419	-	OTT_1512	-	transposase
1513	 27.98	-1	1543255..1543497	+	80	189184420	-	OTT_1513	-	transposase
1514	 27.19	-1	1544527..1544640	+	37	189184421	-	OTT_1514	-	putative integrase
1515	 28.19	-1	1545218..1546111	+	297	189184422	-	OTT_1515	-	putative lipase LipB
1516	 27.97	-1	1546680..1546940	-	86	189184423	-	OTT_1516	-	putative integrase
1517	 31.51	0	1548337..1548555	-	72	189184424	-	OTT_1517	-	reverse transcriptase
1518	 35.16	+1	1548914..1549132	-	72	189184425	-	OTT_1518	-	ankyrin repeat-containing protein 18
31.48	MEAN

3.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.