IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
73	 28.91	0	76423..77145	+	240	189182980	-	OTT_0073	-	hypothetical protein
74	 27.60	-1	77140..77610	-	156	189182981	-	OTT_0074	-	hypothetical protein
75	 32.58	0	77941..78870	-	309	189182982	xerD	OTT_0075	-	integrase/recombinase XerD
76	 28.31	-1	79227..80600	+	457	189182983	tolC	OTT_0076	-	outer membrane protein TolC precursor
77	 25.31	-1	80645..81217	+	190	189182984	-	OTT_0077	-	hypothetical protein
78	 28.49	0	81219..83075	+	618	189182985	-	OTT_0078	-	hypothetical protein
79	 29.76	0	83123..83878	+	251	189182986	trmD	OTT_0079	-	tRNA (guanine-N1)-methyltransferase
80	 29.87	0	83875..84249	+	124	189182987	rplS	OTT_0080	-	50S ribosomal protein L19
81	 31.56	0	84276..86471	+	731	189182988	recD	OTT_0081	-	exodeoxyribonuclease V alpha subunit
82	 28.90	0	87475..88377	+	300	189182989	ilvE	OTT_0082	-	branched-chain amino acid aminotransferase
83	 32.89	0	88358..89254	+	298	189182990	dapA	OTT_0083	-	dihydrodipicolinate synthase
84	 30.30	0	89257..89718	+	153	189182991	smpB	OTT_0084	-	small protein B homolog
85	 31.90	0	89738..90646	+	302	189182992	sppA	OTT_0085	-	protease IV
86	 34.98	+1	90657..91565	+	302	189182993	lipA	OTT_0086	-	lipoic acid synthetase
87	 29.31	0	91586..92032	+	148	189182994	-	OTT_0087	-	hypothetical protein
88	 25.85	-1	92016..92750	+	244	189182995	purC	OTT_0088	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
89	 28.40	0	93230..93472	+	80	189182996	-	OTT_0089	-	transposase
90	 28.70	0	93889..94233	+	114	189182997	-	OTT_0090	-	putative integrase
91	 29.82	0	94443..94784	+	113	189182998	-	OTT_0091	-	putative integrase
92	 33.33	0	95455..95604	+	49	189182999	-	OTT_0092	-	hypothetical protein
93	 30.56	0	95604..95747	+	47	189183000	-	OTT_0093	-	putative conjugative transfer protein TraE
94	 30.86	0	95834..96157	+	107	189183001	-	OTT_0094	-	putative conjugative transfer protein TraE
95	 28.38	0	96154..96456	+	100	189183002	-	OTT_0095	-	hypothetical protein
96	 28.57	0	96456..96560	+	34	189183003	-	OTT_0096	-	hypothetical protein
97	 40.35	+2	96672..96899	+	75	189183004	-	OTT_0097	-	putative conjugative transfer protein TraB
98	 35.56	+1	96862..97131	+	89	189183005	-	OTT_0098	-	putative conjugative transfer protein TraB
99	 30.91	0	97131..97460	+	109	189183006	-	OTT_0099	-	hypothetical protein
100	 35.35	+1	97372..99453	+	693	189183007	-	OTT_0100	-	putative conjugative transfer protein TraC
101	 37.28	+1	99652..99930	+	92	189183008	-	OTT_0101	-	putative conjugative transfer protein TraC
102	 34.70	+1	99927..100586	+	219	189183009	-	OTT_0102	-	putative conjugative transfer protein TraW
103	 29.41	0	100672..100875	+	67	189183010	-	OTT_0103	-	hypothetical protein
104	 38.55	+2	100876..101853	+	325	189183011	-	OTT_0104	-	putative conjugative transfer protein TraU
105	 32.30	0	102142..103110	+	322	189183012	-	OTT_0105	-	transposase
106	 34.46	0	103375..103818	+	147	189183013	-	OTT_0106	-	putative conjugative transfer protein TraG
107	 26.36	-1	104006..104392	+	128	189183014	-	OTT_0107	-	TPR repeat-containing protein 01_01
108	 25.97	-1	104424..104681	+	85	189183015	-	OTT_0108	-	TPR repeat-containing protein 01_02
109	 31.30	0	104687..105031	+	114	189183016	-	OTT_0109	-	putative conjugative transfer protein TraD
110	 34.24	0	105092..105421	+	109	189183017	-	OTT_0110	-	putative conjugative transfer protein TraD
111	 27.87	-1	106106..108577	+	823	189183018	-	OTT_0111	-	hypothetical protein
112	 28.37	0	109258..110124	+	288	189183019	-	OTT_0112	-	transposase
113	 32.46	0	110125..110466	+	113	189183020	-	OTT_0113	-	transposase
114	 27.82	-1	110396..110794	+	132	189183021	-	OTT_0114	-	transposase
115	 32.97	0	111173..112264	+	363	189183022	-	OTT_0115	-	putative conjugative transfer protein TraD
116	 32.22	0	112274..113257	-	327	189183023	-	OTT_0116	-	putative transposase
117	 31.65	0	113309..114379	-	356	189183024	-	OTT_0117	-	putative conjugative transfer protein TraI
118	 33.56	0	114710..116458	-	582	189183025	-	OTT_0118	-	putative conjugative transfer protein TraA
119	 31.59	0	116500..116958	-	152	189183026	-	OTT_0119	-	putative conjugative transfer protein TraA
120	 35.96	+1	117167..117622	+	151	189183027	-	OTT_0120	-	putative conjugative transfer protein TraD
121	 27.02	-1	117946..118230	+	94	189183028	-	OTT_0121	-	TPR repeat-containing protein 02_01
122	 30.83	0	118734..118853	-	39	189183029	-	OTT_0122	-	transposase
123	 31.94	0	119302..122739	+	1145	189183030	-	OTT_0123	-	sensor histidine kinase/response regulator/transporter hybrid protein
124	 28.29	-1	123417..123773	-	118	189183031	-	OTT_0124	-	transposase
125	 29.61	0	123909..124847	-	312	189183032	-	OTT_0125	-	hypothetical protein
126	 30.27	0	124969..125556	-	195	189183033	-	OTT_0126	-	RelA/SpoT-related protein
127	 29.70	0	125598..126092	-	164	189183034	-	OTT_0127	-	hypothetical protein
128	 30.14	0	126111..127049	-	312	189183035	-	OTT_0128	-	hypothetical protein
129	 31.43	0	127072..127545	-	157	189183036	-	OTT_0129	-	hypothetical protein
130	 30.50	0	127587..127868	-	93	189183037	-	OTT_0130	-	hypothetical protein
131	 28.87	0	127997..128287	-	96	189183038	-	OTT_0131	-	hypothetical protein
132	 39.33	+2	128515..128814	-	99	189183039	-	OTT_0132	-	hypothetical protein
133	 34.04	0	128798..129937	+	379	189183040	-	OTT_0133	-	reverse transcriptase
134	 32.80	0	130360..130545	-	61	189183041	-	OTT_0134	-	putative conjugative transfer protein TraN
135	 32.33	0	130582..130980	-	132	189183042	-	OTT_0135	-	putative conjugative transfer protein TraN
136	 38.10	+2	131027..131971	-	314	189183043	-	OTT_0136	-	putative conjugative transfer protein TraU
137	 33.01	0	132009..132623	-	204	189183044	-	OTT_0137	-	putative conjugative transfer protein TraW
138	 30.86	0	132923..134014	-	363	189183045	-	OTT_0138	-	hypothetical protein
139	 35.87	+1	134167..136215	-	682	189183046	-	OTT_0139	-	putative conjugative transfer protein TraC
140	 31.21	0	136124..136453	-	109	189183047	-	OTT_0140	-	hypothetical protein
141	 33.88	0	136453..136635	-	60	189183048	-	OTT_0141	-	putative conjugative transfer protein TraB
142	 33.96	0	136665..136982	-	105	189183049	-	OTT_0142	-	putative conjugative transfer protein TraE
143	 33.33	0	136982..137131	-	49	189183050	-	OTT_0143	-	hypothetical protein
144	 34.30	0	137625..138764	-	379	189183051	-	OTT_0144	-	reverse transcriptase
145	 39.33	+2	138748..139047	+	99	189183052	-	OTT_0145	-	hypothetical protein
146	 27.52	-1	139367..139624	+	85	189183053	-	OTT_0146	-	hypothetical protein
147	 28.14	-1	140149..140514	-	121	189183054	-	OTT_0147	-	transposase
148	 29.59	0	140645..141232	+	195	189183055	-	OTT_0148	-	RelA/SpoT-related protein
149	 29.23	0	141354..141914	+	186	189183056	-	OTT_0149	-	hypothetical protein
150	 31.94	0	142209..142424	-	71	189183057	-	OTT_0150	-	hypothetical protein
151	 30.64	0	142835..143614	-	259	189183058	-	OTT_0151	-	hypothetical protein
152	 33.33	0	143834..144046	-	70	189183059	-	OTT_0152	-	transposase
153	 30.85	0	144257..144901	-	214	189183060	-	OTT_0153	-	ankyrin repeat-containing protein 03_01
154	 32.61	0	144939..145490	-	183	189183061	-	OTT_0154	-	RelA/SpoT-related protein
155	 35.44	+1	145727..146059	-	110	189183062	-	OTT_0155	-	replicative DNA helicase
156	 31.32	0	146123..146965	-	280	189183063	-	OTT_0156	-	hypothetical protein
157	 28.33	-1	147094..147852	-	252	189183064	-	OTT_0157	-	hypothetical protein
158	 29.75	0	147941..148498	+	185	189183065	-	OTT_0158	-	transposase
159	 29.52	0	149576..149680	+	34	189183066	-	OTT_0159	-	transposase
160	 27.98	-1	149692..149934	+	80	189183067	-	OTT_0160	-	transposase
161	 25.66	-1	150404..151798	+	464	189183068	-	OTT_0161	-	hypothetical protein
162	 28.53	0	152846..156073	+	1075	189183069	-	OTT_0162	-	sensor histidine kinase/response regulator/transporter hybrid protein
163	 29.24	0	156678..156848	+	56	189183070	-	OTT_0163	-	transposase
164	 29.86	0	158057..159064	+	335	189183071	trpS	OTT_0164	-	tryptophanyl-tRNA synthetase
165	 31.91	0	159629..159769	-	46	189183072	-	OTT_0165	-	RelA/SpoT-related protein
166	 32.02	0	160184..161632	-	482	189183073	-	OTT_0166	-	replicative DNA helicase
167	 30.15	0	161641..162174	-	177	189183074	-	OTT_0167	-	hypothetical protein
168	 29.44	0	163021..163200	+	59	189183075	-	OTT_0168	-	reverse transcriptase
169	 31.38	0	164258..164770	-	170	189183076	-	OTT_0169	-	hypothetical protein
170	 30.94	0	166062..166856	-	264	189183077	-	OTT_0170	-	ComL-like lipoprotein
171	 21.30	-2	167151..167657	+	168	189183078	lspA	OTT_0171	-	lipoprotein signal peptidase
172	 32.65	0	168769..170226	+	485	189183079	-	OTT_0172	-	putative conjugative transfer protein TraA
31.48	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.