IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
904	 44.03	0	1048368..1049096	-	242	17228401	-	all0906	-	hypothetical protein
905	 37.02	-1	1049279..1050064	-	261	17228402	-	all0907	-	ABC phosphate transport system ATP-binding protein
906	 40.49	0	1050820..1051602	-	260	17228403	-	all0908	-	ABC phosphate transport system ATP-binding protein
907	 40.84	0	1051773..1052651	-	292	17228404	-	all0909	-	ABC phosphate transport system permease protein
908	 39.83	0	1052681..1053712	-	343	17228405	-	all0910	-	ABC phosphate transport system permease protein
909	 43.77	0	1053742..1054785	-	347	17228406	-	all0911	-	ABC phosphate transport system phosphate-binding periplasmic protein
910	 44.87	0	1055744..1056757	+	337	17228407	era	alr0912	-	GTP-binding protein Era
911	 46.31	+1	1056904..1057581	+	225	17228408	-	alr0913	-	two-component response regulator
912	 36.00	-1	1057871..1058884	-	337	17228409	-	all0914	-	hypothetical protein
913	 43.82	0	1058947..1059852	-	301	17228410	-	all0915	-	hypothetical protein
914	 37.00	-1	1059868..1061148	-	426	17228411	-	all0916	-	ABC transporter ATP binding subunit
915	 41.37	0	1061148..1061993	-	281	17228412	-	all0917	-	ABC transporter permease protein
916	 43.71	0	1062149..1062871	-	240	17228413	-	all0918	-	hypothetical protein
917	 36.28	-1	1063224..1064513	-	429	17228414	-	all0919	-	hypothetical protein
918	 41.37	0	1064918..1066459	+	513	17228415	-	alr0920	-	hypothetical protein
919	 44.44	0	1066560..1066910	-	116	17228416	-	all0921	-	hypothetical protein
920	 38.66	0	1067406..1068212	+	268	17228417	-	alr0922	-	hypothetical protein
921	 42.16	0	1068680..1068883	+	67	17228418	-	asr0923	-	hypothetical protein
922	 31.74	-2	1069138..1069575	-	145	17228419	-	all0924	-	hypothetical protein
923	 37.85	-1	1070028..1070315	+	95	17228420	-	asr0925	-	hypothetical protein
924	 40.86	0	1070498..1076449	-	1983	17228421	-	all0926	-	two-component hybrid sensor and regulator
925	 43.26	0	1076561..1079503	-	980	17228422	-	all0927	-	methyl-accepting chemotaxis protein
926	 46.14	+1	1079500..1080030	-	176	17228423	cheW	all0928	-	chemotaxis protein
927	 43.99	0	1080044..1080409	-	121	17228424	-	all0929	-	two-component system, regulatory protein
928	 38.26	0	1080682..1081920	-	412	17228425	-	all0930	-	two-component system, regulatory protein
929	 41.61	0	1082335..1084086	+	583	17228426	-	alr0931	-	hypothetical protein
930	 43.44	0	1084312..1085340	-	342	17228427	-	all0932	-	hypothetical protein
931	 40.84	0	1085500..1086192	+	230	17228428	-	alr0933	-	type II site-specific deoxyribonuclease
932	 43.93	0	1086196..1087629	-	477	17228429	-	all0934	-	site-specific DNA-methyltransferase
933	 31.73	-2	1087754..1088065	-	103	17228430	-	all0935	-	hypothetical protein
934	 45.64	0	1088239..1089294	-	351	17228431	-	all0936	-	c-type cytochrome synthesis protein
935	 42.44	0	1089458..1091203	-	581	17228432	-	all0937	-	hypothetical protein
936	 46.86	+1	1091455..1091868	-	137	17228433	-	all0938	-	hypothetical protein
937	 47.47	+1	1092759..1094102	+	447	17228434	accC	alr0939	-	acetyl-CoA carboxylase biotin carboxylase subunit
938	 45.24	0	1094158..1094451	-	97	17228435	-	asl0940	-	hypothetical protein
939	 37.50	-1	1094762..1094881	+	39	17228436	psbX	asr0941	-	photosystem II protein
940	 46.07	0	1095133..1096035	+	300	17228437	-	alr0942	-	hypothetical protein
941	 46.52	+1	1096090..1096650	+	186	17228438	-	alr0943	-	hypothetical protein
942	 44.64	0	1096696..1097217	+	173	17228439	-	alr0944	-	hypothetical protein
943	 44.01	0	1097272..1098273	-	333	17228440	-	all0945	-	succinate dehydrogenase iron-sulfur subunit
944	 40.92	0	1100088..1100522	+	144	17228441	-	alr0946	-	hypothetical protein
945	 39.49	0	1100772..1101599	+	275	17228442	-	alr0947	-	hypothetical protein
946	 46.39	+1	1101732..1102688	-	318	17228443	-	all0948	-	protoheme IX farnesyltransferase
947	 47.11	+1	1102854..1103855	-	333	17228444	-	all0949	-	hypothetical protein
948	 46.35	+1	1104204..1105271	+	355	17228445	coxB	alr0950	-	cytochrome c oxidase subunit II
949	 47.16	+1	1105412..1107139	+	575	17228446	coxA	alr0951	-	cytochrome c oxidase subunit I
950	 44.23	0	1107308..1107931	+	207	17228447	coxC	alr0952	-	cytochrome c oxidase subunit III
951	 34.05	-1	1108230..1108649	+	139	17228448	-	alr0953	-	hypothetical protein
952	 38.93	0	1108682..1109593	-	303	17228449	-	all0954	-	hypothetical protein
953	 42.24	0	1109946..1110686	-	246	17228450	-	all0955	-	hypothetical protein
954	 38.14	0	1110656..1110988	-	110	17228451	-	all0956	-	hypothetical protein
955	 40.67	0	1111860..1112309	+	149	17228452	-	alr0957	-	ferric uptake regulator
956	 40.13	0	1112393..1113820	-	475	17228453	-	all0958	-	hypothetical protein
957	 37.38	-1	1113864..1115273	-	469	17228454	-	all0959	-	hypothetical protein
958	 40.18	0	1115407..1117173	+	588	17228455	ycf55	alr0960	-	two-component response regulator
959	 44.71	0	1117295..1117918	-	207	17228456	-	all0961	-	molybdopterin-guanine dinucleotide biosynthesis protein A
960	 41.51	0	1118093..1118410	-	105	17228457	-	all0962	-	hypothetical protein
961	 41.59	0	1118527..1121649	+	1040	17228458	-	alr0963	-	hypothetical protein
962	 37.97	0	1121819..1122163	+	114	17228459	-	alr0964	-	hypothetical protein
963	 36.38	-1	1122160..1123605	+	481	17228460	-	alr0965	-	hypothetical protein
964	 45.80	0	1123882..1125951	-	689	17228461	-	all0966	-	hypothetical protein
965	 41.80	0	1126140..1127627	-	495	17228462	-	all0967	-	hypothetical protein
966	 45.12	0	1127791..1128672	-	293	17228463	fabG	all0968	-	3-ketoacyl-acyl carrier protein reductase
967	 41.18	0	1129408..1131039	-	543	17228464	-	all0969	-	hypothetical protein
968	 40.27	0	1131535..1132485	+	316	17228465	-	alr0970	-	ABC transporter ATP-binding protein
969	 36.66	-1	1132502..1134214	+	570	17228466	-	alr0971	-	hypothetical protein
970	 42.59	0	1134563..1135318	+	251	17228467	-	alr0972	-	ABC transporter ATP-binding protein
971	 39.18	0	1135394..1136026	+	210	17228468	-	alr0973	-	permease protein of ABC transporter
972	 36.85	-1	1136071..1136979	+	302	17228469	-	alr0974	-	binding protein of ABC transporter component
973	 36.35	-1	1137001..1137729	+	242	17228470	-	alr0975	-	hypothetical protein
974	 42.13	0	1137870..1138619	-	249	17228471	-	all0976	-	hypothetical protein
975	 45.89	0	1138792..1139022	-	76	17228472	-	asl0977	-	hypothetical protein
976	 45.49	0	1139019..1142579	-	1186	17228473	-	all0978	-	two-component hybrid sensor and regulator
977	 42.08	0	1144093..1144755	-	220	17228474	-	all0979	-	hypothetical protein
978	 45.02	0	1144905..1145999	-	364	17228475	ddl	all0980	-	D-alanyl-alanine synthetase A
979	 44.99	0	1146326..1147174	+	282	17228476	-	alr0981	-	hypothetical protein
980	 47.89	+1	1147365..1148738	-	457	17228477	thiC	all0982	-	thiamine biosynthesis protein ThiC
981	 41.09	0	1148974..1150056	-	360	17228478	-	all0983	-	hypothetical protein
982	 37.94	0	1150471..1150926	-	151	17228479	-	all0984	-	hypothetical protein
983	 40.20	0	1151301..1152509	-	402	17228480	-	all0985	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
984	 43.55	0	1152761..1153729	+	322	17228481	-	alr0986	-	hypothetical protein
985	 38.14	0	1153734..1154045	+	103	17228482	-	alr0987	-	hypothetical protein
986	 45.17	0	1154076..1155275	-	399	17228483	-	all0988	-	N-acetyl-glucosamine-6-phosphate deacetylase
987	 45.27	0	1155388..1155915	+	175	17228484	purK	alr0989	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
988	 44.49	0	1156507..1158003	+	498	17228485	-	alr0990	-	ammonium transporter
989	 45.47	0	1158426..1159982	+	518	17228486	-	alr0991	-	ammonium transporter
990	 48.34	+1	1160381..1161793	+	470	17228487	-	alr0992	-	ammonium transporter
991	 47.23	+1	1162000..1165209	-	1069	17228488	-	all0993	-	hypothetical protein
992	 45.08	0	1165509..1165772	-	87	17228489	-	asl0994	-	hypothetical protein
993	 45.70	0	1165953..1166429	-	158	17228490	-	all0995	-	hypothetical protein
994	 41.92	0	1166972..1168438	+	488	17228491	-	alr0996	-	protease
995	 34.79	-1	1168549..1168959	-	136	17228492	-	all0997	-	hypothetical protein
996	 45.03	0	1169392..1170306	+	304	17228493	-	alr0998	-	hypothetical protein
997	 40.38	0	1170482..1171375	+	297	17228494	-	alr0999	-	transposase
998	 41.74	0	1171949..1173031	+	360	17228495	-	alr1000	-	hypothetical protein
999	 42.31	0	1173376..1173921	+	181	17228496	-	alr1001	-	hypothetical protein
1000	 42.32	0	1174084..1174584	+	166	17228497	-	alr1002	-	hypothetical protein
1001	 40.60	0	1174706..1175104	-	132	17228498	-	all1003	-	hypothetical protein
1002	 46.77	+1	1175265..1176410	+	381	17228499	-	alr1004	-	alanine--glyoxylate aminotransferase
1003	 48.15	+1	1176606..1176848	+	80	17228500	-	asr1005	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.