IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.00   STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
861	 47.92	+1	992689..993504	-	271	17228358	ccmK	all0863	-	carbon dioxide concentrating mechanism protein
862	 45.65	0	993505..994251	-	248	17228359	ccmN	all0864	-	carbon dioxide concentrating mechanism protein
863	 47.42	+1	994401..996068	-	555	17228360	ccmM	all0865	-	carbon dioxide concentrating mechanism protein
864	 43.14	0	996175..996480	-	101	17228361	ccmL	all0866	-	carbon dioxide concentrating mechanism protein
865	 47.54	+1	996487..996831	-	114	17228362	ccmK	alr0867	-	carbon dioxide concentrating mechanism protein
866	 48.22	+1	997013..997321	-	102	17228363	-	all0868	-	carbon dioxide concentrating mechanism protein
867	 44.96	0	997980..999836	+	618	17228364	ndhF	alr0869	-	NAD(P)H-quinone oxidoreductase subunit F
868	 44.18	0	999925..1001427	+	500	17228365	ndhD	alr0870	-	NAD(P)H-quinone oxidoreductase subunit D4
869	 38.11	0	1001547..1002677	+	376	17228366	-	alr0871	-	hypothetical protein
870	 40.93	0	1002715..1006428	-	1237	17228367	-	all0872	-	hypothetical protein
871	 41.18	0	1006779..1006982	-	67	17228368	-	asl0873	-	high light inducible protein
872	 44.52	0	1008496..1009389	+	297	17228369	nifH2	alr0874	-	nitrogenase reductase
873	 39.72	0	1009737..1011395	-	552	17228370	-	all0875	-	hypothetical protein
874	 40.21	0	1011688..1012065	-	125	17228371	-	all0876	-	hypothetical protein
875	 51.96	+2	1012172..1012477	+	101	17228372	-	alr0877	-	hypothetical protein
876	 42.74	0	1012535..1013353	-	272	17228373	-	all0878	-	hypothetical protein
877	 45.19	0	1013427..1014413	-	328	17228374	-	all0879	-	alcohol dehydrogenase
878	 47.27	+1	1014604..1016712	+	702	17228375	-	alr0880	-	oligopeptidase A
879	 38.64	0	1016846..1017109	-	87	17228376	-	asl0881	-	hypothetical protein
880	 41.90	0	1018047..1018898	+	283	17228377	-	alr0882	-	hypothetical protein
881	 39.32	0	1019083..1019199	-	38	17228378	psbM	asl0883	-	photosystem II reaction center protein M
882	 38.38	0	1019300..1019596	-	98	17228379	-	asl0884	-	hypothetical protein
883	 39.86	0	1019759..1019896	-	45	17228380	psbK	asl0885	-	photosystem II reaction center protein K
884	 35.96	-1	1020119..1025671	-	1850	17228381	-	all0886	-	serine/threonine kinase protein
885	 40.37	0	1025963..1026502	-	179	17228382	-	all0887	-	hypothetical protein
886	 44.73	0	1026828..1027538	-	236	17228383	-	all0888	-	ribose-5-phosphate isomerase A
887	 44.77	0	1027723..1029540	-	605	17228384	-	all0889	-	hypothetical protein
888	 42.54	0	1029797..1030024	+	75	17228385	-	asr0890	-	hypothetical protein
889	 42.55	0	1030262..1030684	-	140	17228386	-	all0891	-	hypothetical protein
890	 42.54	0	1030963..1031364	+	133	17228387	-	alr0892	-	hypothetical protein
891	 44.20	0	1031408..1032502	+	364	17228388	-	alr0893	-	hypothetical protein
892	 48.62	+1	1032663..1033388	+	241	17228389	-	alr0894	-	hypothetical protein
893	 44.96	0	1033466..1034635	+	389	17228390	-	alr0895	-	alcohol dehydrogenase
894	 40.48	0	1034897..1035316	+	139	17228391	-	alr0896	-	hypothetical protein
895	 44.96	0	1035420..1036589	+	389	17228392	-	alr0897	-	alcohol dehydrogenase
896	 45.03	0	1036601..1036942	+	113	17228393	-	alr0898	-	hypothetical protein
897	 40.94	0	1036994..1037335	-	113	17228394	-	all0899	-	hypothetical protein
898	 41.20	0	1037477..1042879	+	1800	17228395	-	alr0900	-	serine/threonine kinase protein
899	 44.68	0	1043070..1043924	+	284	17228396	-	alr0901	-	hypothetical protein
900	 39.89	0	1044043..1044789	-	248	17228397	-	all0902	-	hypothetical protein
901	 41.93	0	1044884..1045744	-	286	17228398	-	all0903	-	hypothetical protein
902	 46.70	+1	1046085..1047431	+	448	17228399	-	alr0904	-	hypothetical protein
903	 44.44	0	1047764..1048042	+	92	17228400	-	asr0905	-	hypothetical protein
904	 44.03	0	1048368..1049096	-	242	17228401	-	all0906	-	hypothetical protein
905	 37.02	-1	1049279..1050064	-	261	17228402	-	all0907	-	ABC phosphate transport system ATP-binding protein
906	 40.49	0	1050820..1051602	-	260	17228403	-	all0908	-	ABC phosphate transport system ATP-binding protein
907	 40.84	0	1051773..1052651	-	292	17228404	-	all0909	-	ABC phosphate transport system permease protein
908	 39.83	0	1052681..1053712	-	343	17228405	-	all0910	-	ABC phosphate transport system permease protein
909	 43.77	0	1053742..1054785	-	347	17228406	-	all0911	-	ABC phosphate transport system phosphate-binding periplasmic protein
910	 44.87	0	1055744..1056757	+	337	17228407	era	alr0912	-	GTP-binding protein Era
911	 46.31	+1	1056904..1057581	+	225	17228408	-	alr0913	-	two-component response regulator
912	 36.00	-1	1057871..1058884	-	337	17228409	-	all0914	-	hypothetical protein
913	 43.82	0	1058947..1059852	-	301	17228410	-	all0915	-	hypothetical protein
914	 37.00	-1	1059868..1061148	-	426	17228411	-	all0916	-	ABC transporter ATP binding subunit
915	 41.37	0	1061148..1061993	-	281	17228412	-	all0917	-	ABC transporter permease protein
916	 43.71	0	1062149..1062871	-	240	17228413	-	all0918	-	hypothetical protein
917	 36.28	-1	1063224..1064513	-	429	17228414	-	all0919	-	hypothetical protein
918	 41.37	0	1064918..1066459	+	513	17228415	-	alr0920	-	hypothetical protein
919	 44.44	0	1066560..1066910	-	116	17228416	-	all0921	-	hypothetical protein
920	 38.66	0	1067406..1068212	+	268	17228417	-	alr0922	-	hypothetical protein
921	 42.16	0	1068680..1068883	+	67	17228418	-	asr0923	-	hypothetical protein
922	 31.74	-2	1069138..1069575	-	145	17228419	-	all0924	-	hypothetical protein
923	 37.85	-1	1070028..1070315	+	95	17228420	-	asr0925	-	hypothetical protein
924	 40.86	0	1070498..1076449	-	1983	17228421	-	all0926	-	two-component hybrid sensor and regulator
925	 43.26	0	1076561..1079503	-	980	17228422	-	all0927	-	methyl-accepting chemotaxis protein
926	 46.14	+1	1079500..1080030	-	176	17228423	cheW	all0928	-	chemotaxis protein
927	 43.99	0	1080044..1080409	-	121	17228424	-	all0929	-	two-component system, regulatory protein
928	 38.26	0	1080682..1081920	-	412	17228425	-	all0930	-	two-component system, regulatory protein
929	 41.61	0	1082335..1084086	+	583	17228426	-	alr0931	-	hypothetical protein
930	 43.44	0	1084312..1085340	-	342	17228427	-	all0932	-	hypothetical protein
931	 40.84	0	1085500..1086192	+	230	17228428	-	alr0933	-	type II site-specific deoxyribonuclease
932	 43.93	0	1086196..1087629	-	477	17228429	-	all0934	-	site-specific DNA-methyltransferase
933	 31.73	-2	1087754..1088065	-	103	17228430	-	all0935	-	hypothetical protein
934	 45.64	0	1088239..1089294	-	351	17228431	-	all0936	-	c-type cytochrome synthesis protein
935	 42.44	0	1089458..1091203	-	581	17228432	-	all0937	-	hypothetical protein
936	 46.86	+1	1091455..1091868	-	137	17228433	-	all0938	-	hypothetical protein
937	 47.47	+1	1092759..1094102	+	447	17228434	accC	alr0939	-	acetyl-CoA carboxylase biotin carboxylase subunit
938	 45.24	0	1094158..1094451	-	97	17228435	-	asl0940	-	hypothetical protein
939	 37.50	-1	1094762..1094881	+	39	17228436	psbX	asr0941	-	photosystem II protein
940	 46.07	0	1095133..1096035	+	300	17228437	-	alr0942	-	hypothetical protein
941	 46.52	+1	1096090..1096650	+	186	17228438	-	alr0943	-	hypothetical protein
942	 44.64	0	1096696..1097217	+	173	17228439	-	alr0944	-	hypothetical protein
943	 44.01	0	1097272..1098273	-	333	17228440	-	all0945	-	succinate dehydrogenase iron-sulfur subunit
944	 40.92	0	1100088..1100522	+	144	17228441	-	alr0946	-	hypothetical protein
945	 39.49	0	1100772..1101599	+	275	17228442	-	alr0947	-	hypothetical protein
946	 46.39	+1	1101732..1102688	-	318	17228443	-	all0948	-	protoheme IX farnesyltransferase
947	 47.11	+1	1102854..1103855	-	333	17228444	-	all0949	-	hypothetical protein
948	 46.35	+1	1104204..1105271	+	355	17228445	coxB	alr0950	-	cytochrome c oxidase subunit II
949	 47.16	+1	1105412..1107139	+	575	17228446	coxA	alr0951	-	cytochrome c oxidase subunit I
950	 44.23	0	1107308..1107931	+	207	17228447	coxC	alr0952	-	cytochrome c oxidase subunit III
951	 34.05	-1	1108230..1108649	+	139	17228448	-	alr0953	-	hypothetical protein
952	 38.93	0	1108682..1109593	-	303	17228449	-	all0954	-	hypothetical protein
953	 42.24	0	1109946..1110686	-	246	17228450	-	all0955	-	hypothetical protein
954	 38.14	0	1110656..1110988	-	110	17228451	-	all0956	-	hypothetical protein
955	 40.67	0	1111860..1112309	+	149	17228452	-	alr0957	-	ferric uptake regulator
956	 40.13	0	1112393..1113820	-	475	17228453	-	all0958	-	hypothetical protein
957	 37.38	-1	1113864..1115273	-	469	17228454	-	all0959	-	hypothetical protein
958	 40.18	0	1115407..1117173	+	588	17228455	ycf55	alr0960	-	two-component response regulator
959	 44.71	0	1117295..1117918	-	207	17228456	-	all0961	-	molybdopterin-guanine dinucleotide biosynthesis protein A
960	 41.51	0	1118093..1118410	-	105	17228457	-	all0962	-	hypothetical protein
42.00	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.