IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
814	 42.86	0	941010..941471	+	153	17228311	-	alr0816	-	hypothetical protein
815	 37.31	-1	941561..941761	-	66	17228312	-	asl0817	-	hypothetical protein
816	 41.29	0	941779..941979	-	66	17228313	-	asl0818	-	hypothetical protein
817	 39.05	0	943252..944703	+	483	17228314	-	alr0819	-	hypothetical protein
818	 44.37	0	944828..946177	+	449	17228315	-	alr0820	-	sun protein
819	 41.13	0	946235..946657	+	140	17228316	-	alr0821	-	hypothetical protein
820	 49.07	+1	946719..946934	-	71	17228317	-	asl0822	-	hypothetical protein
821	 39.68	0	947102..947479	-	125	17228318	-	all0823	-	two-component response regulator
822	 44.67	0	947549..950557	-	1002	17228319	-	all0824	-	two-component hybrid sensor and regulator
823	 42.79	0	950550..952601	-	683	17228320	-	all0825	-	two-component sensor histidine kinase
824	 38.89	0	952576..952809	-	77	17228321	-	asl0826	-	hypothetical protein
825	 45.13	0	952888..953955	-	355	17228322	-	all0827	-	hypothetical protein
826	 38.73	0	953982..954296	+	104	17228323	-	alr0828	-	hypothetical protein
827	 42.48	0	955081..955233	-	50	17228324	-	asl0829	-	hypothetical protein
828	 43.62	0	955685..956569	-	294	17228325	-	all0830	-	ABC transporter permease protein
829	 36.09	-1	956795..957157	+	120	17228326	-	alr0831	-	hypothetical protein
830	 42.25	0	957214..957987	-	257	17228327	-	all0832	-	ATP-binding protein of ABC transporter
831	 40.00	0	958147..959166	-	339	17228328	-	all0833	-	periplasmic solute binding protein for ABC transport system
832	 44.99	0	959601..961136	+	511	17228329	-	alr0834	-	porin; major outer membrane protein
833	 43.88	0	961287..961760	-	157	17228330	-	all0835	-	hypothetical protein
834	 43.94	0	962044..962241	-	65	17228331	-	asl0836	-	hypothetical protein
835	 40.96	0	962472..962720	+	82	17228332	-	asr0837	-	hypothetical protein
836	 38.80	0	962950..964083	+	377	17228333	-	alr0838	-	hypothetical protein
837	 42.67	0	964166..965086	-	306	17228334	-	all0839	-	hypothetical protein
838	 45.34	0	965435..966517	+	360	17228335	-	alr0840	-	hypothetical protein
839	 44.71	0	966520..968988	+	822	17228336	-	alr0841	-	hypothetical protein
840	 39.51	0	969047..969289	-	80	17228337	-	asl0842	-	hypothetical protein
841	 44.07	0	969697..969873	+	58	17228338	rps21	asr0843	-	30S ribosomal protein S21
842	 44.93	0	970118..970729	-	203	17228339	-	all0844	-	peptidyl-tRNA hydrolase
843	 43.22	0	970796..971068	-	90	17228340	-	asl0845	-	hypothetical protein
844	 43.92	0	971511..971699	-	62	17228341	psbH	asl0846	-	photosystem II reaction center protein H
845	 45.45	0	971785..971916	+	43	17228342	psbN	asr0847	-	photosystem II reaction center protein N
846	 43.67	0	972004..975147	-	1047	17228343	-	all0848	-	hypothetical protein
847	 39.97	0	975416..976951	+	511	17228344	-	alr0849	-	hypothetical protein
848	 47.83	+1	977078..978022	-	314	17228345	-	all0850	-	hypothetical protein
849	 45.86	0	978239..979084	+	281	17228346	-	alr0851	-	lysophospholipase
850	 42.20	0	979397..980005	-	202	17228347	-	all0852	-	hypothetical protein
851	 43.01	0	979974..981998	-	674	17228348	-	all0853	-	two-component sensor histidine kinase
852	 48.21	+1	982688..983023	-	111	17228349	-	all0854	-	hypothetical protein
853	 42.06	0	983093..983344	+	83	17228350	-	asr0855	-	hypothetical protein
854	 46.70	+1	983425..983970	+	181	17228351	-	alr0856	-	hypothetical protein
855	 44.10	0	983987..984376	+	129	17228352	-	alr0857	-	hypothetical protein
856	 36.31	-1	984428..984763	-	111	17228353	-	all0858	-	hypothetical protein
857	 45.75	0	984790..986376	-	528	161353748	lnt	all0859	-	apolipoprotein N-acyltransferase
858	 47.54	+1	986357..988975	-	872	17228355	-	all0860	-	DNA gyrase subunit A
859	 42.00	0	989468..991105	-	545	17228356	-	all0861	-	hypothetical protein
860	 44.08	0	991307..992227	-	306	17228357	-	all0862	-	hypothetical protein
861	 47.92	+1	992689..993504	-	271	17228358	ccmK	all0863	-	carbon dioxide concentrating mechanism protein
862	 45.65	0	993505..994251	-	248	17228359	ccmN	all0864	-	carbon dioxide concentrating mechanism protein
863	 47.42	+1	994401..996068	-	555	17228360	ccmM	all0865	-	carbon dioxide concentrating mechanism protein
864	 43.14	0	996175..996480	-	101	17228361	ccmL	all0866	-	carbon dioxide concentrating mechanism protein
865	 47.54	+1	996487..996831	-	114	17228362	ccmK	alr0867	-	carbon dioxide concentrating mechanism protein
866	 48.22	+1	997013..997321	-	102	17228363	-	all0868	-	carbon dioxide concentrating mechanism protein
867	 44.96	0	997980..999836	+	618	17228364	ndhF	alr0869	-	NAD(P)H-quinone oxidoreductase subunit F
868	 44.18	0	999925..1001427	+	500	17228365	ndhD	alr0870	-	NAD(P)H-quinone oxidoreductase subunit D4
869	 38.11	0	1001547..1002677	+	376	17228366	-	alr0871	-	hypothetical protein
870	 40.93	0	1002715..1006428	-	1237	17228367	-	all0872	-	hypothetical protein
871	 41.18	0	1006779..1006982	-	67	17228368	-	asl0873	-	high light inducible protein
872	 44.52	0	1008496..1009389	+	297	17228369	nifH2	alr0874	-	nitrogenase reductase
873	 39.72	0	1009737..1011395	-	552	17228370	-	all0875	-	hypothetical protein
874	 40.21	0	1011688..1012065	-	125	17228371	-	all0876	-	hypothetical protein
875	 51.96	+2	1012172..1012477	+	101	17228372	-	alr0877	-	hypothetical protein
876	 42.74	0	1012535..1013353	-	272	17228373	-	all0878	-	hypothetical protein
877	 45.19	0	1013427..1014413	-	328	17228374	-	all0879	-	alcohol dehydrogenase
878	 47.27	+1	1014604..1016712	+	702	17228375	-	alr0880	-	oligopeptidase A
879	 38.64	0	1016846..1017109	-	87	17228376	-	asl0881	-	hypothetical protein
880	 41.90	0	1018047..1018898	+	283	17228377	-	alr0882	-	hypothetical protein
881	 39.32	0	1019083..1019199	-	38	17228378	psbM	asl0883	-	photosystem II reaction center protein M
882	 38.38	0	1019300..1019596	-	98	17228379	-	asl0884	-	hypothetical protein
883	 39.86	0	1019759..1019896	-	45	17228380	psbK	asl0885	-	photosystem II reaction center protein K
884	 35.96	-1	1020119..1025671	-	1850	17228381	-	all0886	-	serine/threonine kinase protein
885	 40.37	0	1025963..1026502	-	179	17228382	-	all0887	-	hypothetical protein
886	 44.73	0	1026828..1027538	-	236	17228383	-	all0888	-	ribose-5-phosphate isomerase A
887	 44.77	0	1027723..1029540	-	605	17228384	-	all0889	-	hypothetical protein
888	 42.54	0	1029797..1030024	+	75	17228385	-	asr0890	-	hypothetical protein
889	 42.55	0	1030262..1030684	-	140	17228386	-	all0891	-	hypothetical protein
890	 42.54	0	1030963..1031364	+	133	17228387	-	alr0892	-	hypothetical protein
891	 44.20	0	1031408..1032502	+	364	17228388	-	alr0893	-	hypothetical protein
892	 48.62	+1	1032663..1033388	+	241	17228389	-	alr0894	-	hypothetical protein
893	 44.96	0	1033466..1034635	+	389	17228390	-	alr0895	-	alcohol dehydrogenase
894	 40.48	0	1034897..1035316	+	139	17228391	-	alr0896	-	hypothetical protein
895	 44.96	0	1035420..1036589	+	389	17228392	-	alr0897	-	alcohol dehydrogenase
896	 45.03	0	1036601..1036942	+	113	17228393	-	alr0898	-	hypothetical protein
897	 40.94	0	1036994..1037335	-	113	17228394	-	all0899	-	hypothetical protein
898	 41.20	0	1037477..1042879	+	1800	17228395	-	alr0900	-	serine/threonine kinase protein
899	 44.68	0	1043070..1043924	+	284	17228396	-	alr0901	-	hypothetical protein
900	 39.89	0	1044043..1044789	-	248	17228397	-	all0902	-	hypothetical protein
901	 41.93	0	1044884..1045744	-	286	17228398	-	all0903	-	hypothetical protein
902	 46.70	+1	1046085..1047431	+	448	17228399	-	alr0904	-	hypothetical protein
903	 44.44	0	1047764..1048042	+	92	17228400	-	asr0905	-	hypothetical protein
904	 44.03	0	1048368..1049096	-	242	17228401	-	all0906	-	hypothetical protein
905	 37.02	-1	1049279..1050064	-	261	17228402	-	all0907	-	ABC phosphate transport system ATP-binding protein
906	 40.49	0	1050820..1051602	-	260	17228403	-	all0908	-	ABC phosphate transport system ATP-binding protein
907	 40.84	0	1051773..1052651	-	292	17228404	-	all0909	-	ABC phosphate transport system permease protein
908	 39.83	0	1052681..1053712	-	343	17228405	-	all0910	-	ABC phosphate transport system permease protein
909	 43.77	0	1053742..1054785	-	347	17228406	-	all0911	-	ABC phosphate transport system phosphate-binding periplasmic protein
910	 44.87	0	1055744..1056757	+	337	17228407	era	alr0912	-	GTP-binding protein Era
911	 46.31	+1	1056904..1057581	+	225	17228408	-	alr0913	-	two-component response regulator
912	 36.00	-1	1057871..1058884	-	337	17228409	-	all0914	-	hypothetical protein
913	 43.82	0	1058947..1059852	-	301	17228410	-	all0915	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.