IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
759	 40.56	0	883149..883646	+	165	17228256	-	alr0761	-	hypothetical protein
760	 46.30	+1	883817..884533	+	238	17228257	hoxU	alr0762	-	bidirectional hydrogenase complex protein HoxU
761	 43.65	0	884648..885238	+	196	17228258	-	alr0763	-	hypothetical protein
762	 44.32	0	885335..885880	+	181	17228259	hoxY	alr0764	-	hydrogenase small subunit
763	 44.23	0	885959..886573	+	204	17228260	-	alr0765	-	hypothetical protein
764	 44.90	0	886799..888250	+	483	17228261	hoxH	alr0766	-	hydrogenase large subunit
765	 41.94	0	888330..888887	-	185	17228262	-	all0767	-	hypothetical protein
766	 38.96	0	889009..889896	-	295	17228263	-	all0768	-	hypothetical protein
767	 47.18	+1	889975..892725	-	916	17228264	-	all0769	-	acetyl-CoA synthetase
768	 42.56	0	893012..893488	-	158	17228265	-	all0770	-	hypothetical protein
769	 42.80	0	893746..894780	-	344	17228266	-	all0771	-	4-hydroxyphenylpyruvate dioxygenase
770	 42.07	0	895659..896276	-	205	17228267	-	all0772	-	hypothetical protein
771	 37.85	-1	896671..896958	+	95	17228268	-	asr0773	-	hypothetical protein
772	 40.83	0	897280..897666	+	128	17228269	-	alr0774	-	two-component response regulator
773	 47.23	+1	897675..899588	-	637	17228270	-	all0775	-	squalene-hopene-cyclase
774	 43.91	0	899704..900894	+	396	17228271	-	alr0776	-	hypothetical protein
775	 41.16	0	901197..901694	-	165	17228272	-	all0777	-	hypothetical protein
776	 40.36	0	901827..902951	-	374	17228273	-	all0778	-	hypothetical protein
777	 43.63	0	902951..903154	-	67	17228274	-	asl0779	-	hypothetical protein
778	 33.96	-1	903362..903520	+	52	17228275	-	asr0780	-	hypothetical protein
779	 43.93	0	903538..904962	-	474	17228276	-	all0781	-	hypothetical protein
780	 45.06	0	905282..905989	+	235	17228277	-	alr0782	-	ribulose-phosphate 3-epimerase
781	 44.52	0	906269..907198	-	309	17228278	-	all0783	-	hypothetical protein
782	 39.37	0	907716..908030	+	104	17228279	-	alr0784	-	ferredoxin
783	 44.26	0	908214..908396	+	60	17228280	-	asr0785	-	hypothetical protein
784	 45.70	0	908486..909520	+	344	17228281	-	alr0786	-	hypothetical protein
785	 43.64	0	909647..910228	+	193	17228282	-	alr0787	-	hypothetical protein
786	 44.54	0	910383..911105	-	240	17228283	purN	all0788	-	phosphoribosylglycinamide formyltransferase
787	 43.28	0	911188..912072	+	294	17228284	-	alr0789	-	ABC transporter sugar permease
788	 38.26	0	912250..913305	+	351	17228285	-	alr0790	-	hypothetical protein
789	 44.30	0	913844..916825	+	993	17228286	-	alr0791	-	outer membrane secretion protein
790	 44.14	0	916961..917404	-	147	17228287	-	all0792	-	hypothetical protein
791	 37.57	-1	917424..917612	-	62	17228288	-	asl0793	-	hypothetical protein
792	 44.53	0	917733..919367	-	544	17228289	-	all0794	-	hypothetical protein
793	 29.02	-2	919389..919643	-	84	17228290	-	asl0795	-	hypothetical protein
794	 33.22	-2	919942..921741	-	599	17228291	-	all0796	-	hypothetical protein
795	 46.46	+1	921867..922955	-	362	17228292	-	all0797	-	chorismate synthase
796	 48.97	+1	923268..923510	+	80	17228293	-	asr0798	-	hypothetical protein
797	 36.11	-1	923618..923941	+	107	17228294	-	alr0799	-	hypothetical protein
798	 39.48	0	924135..924638	-	167	17228295	-	all0800	-	molybdopterin precursor biosynthesis protein
799	 39.88	0	924715..925050	-	111	17228296	psbW	all0801	-	photosystem II reaction center protein Psb28
800	 43.33	0	925214..928345	-	1043	17228297	-	all0802	-	hypothetical protein
801	 50.23	+2	928924..930207	+	427	17228298	-	alr0803	-	hypothetical protein
802	 45.02	0	930304..930765	+	153	17228299	-	alr0804	-	hypothetical protein
803	 42.30	0	931003..931437	+	144	17228300	-	alr0805	-	hypothetical protein
804	 42.83	0	931596..932069	+	157	17228301	-	alr0806	-	hypothetical protein
805	 42.39	0	932507..933202	-	231	17228302	-	all0807	-	hypothetical protein
806	 44.30	0	933431..934597	-	388	17228303	-	all0808	-	hypothetical protein
807	 45.13	0	934676..935896	-	406	17228304	-	all0809	-	hypothetical protein
808	 42.23	0	936227..936844	+	205	17228305	-	alr0810	-	transcriptional regulator
809	 46.00	0	936980..937279	+	99	17228306	-	alr0811	-	hypothetical protein
810	 49.93	+1	937279..937977	+	232	17228307	-	alr0812	-	hypothetical protein
811	 46.11	+1	938079..940262	-	727	17228308	hglK	all0813	-	heterocyst-specific glycolipids-directing protein
812	 40.53	0	940329..940592	-	87	17228309	-	asl0814	-	hypothetical protein
813	 41.80	0	940627..940815	-	62	17228310	-	asl0815	-	hypothetical protein
814	 42.86	0	941010..941471	+	153	17228311	-	alr0816	-	hypothetical protein
815	 37.31	-1	941561..941761	-	66	17228312	-	asl0817	-	hypothetical protein
816	 41.29	0	941779..941979	-	66	17228313	-	asl0818	-	hypothetical protein
817	 39.05	0	943252..944703	+	483	17228314	-	alr0819	-	hypothetical protein
818	 44.37	0	944828..946177	+	449	17228315	-	alr0820	-	sun protein
819	 41.13	0	946235..946657	+	140	17228316	-	alr0821	-	hypothetical protein
820	 49.07	+1	946719..946934	-	71	17228317	-	asl0822	-	hypothetical protein
821	 39.68	0	947102..947479	-	125	17228318	-	all0823	-	two-component response regulator
822	 44.67	0	947549..950557	-	1002	17228319	-	all0824	-	two-component hybrid sensor and regulator
823	 42.79	0	950550..952601	-	683	17228320	-	all0825	-	two-component sensor histidine kinase
824	 38.89	0	952576..952809	-	77	17228321	-	asl0826	-	hypothetical protein
825	 45.13	0	952888..953955	-	355	17228322	-	all0827	-	hypothetical protein
826	 38.73	0	953982..954296	+	104	17228323	-	alr0828	-	hypothetical protein
827	 42.48	0	955081..955233	-	50	17228324	-	asl0829	-	hypothetical protein
828	 43.62	0	955685..956569	-	294	17228325	-	all0830	-	ABC transporter permease protein
829	 36.09	-1	956795..957157	+	120	17228326	-	alr0831	-	hypothetical protein
830	 42.25	0	957214..957987	-	257	17228327	-	all0832	-	ATP-binding protein of ABC transporter
831	 40.00	0	958147..959166	-	339	17228328	-	all0833	-	periplasmic solute binding protein for ABC transport system
832	 44.99	0	959601..961136	+	511	17228329	-	alr0834	-	porin; major outer membrane protein
833	 43.88	0	961287..961760	-	157	17228330	-	all0835	-	hypothetical protein
834	 43.94	0	962044..962241	-	65	17228331	-	asl0836	-	hypothetical protein
835	 40.96	0	962472..962720	+	82	17228332	-	asr0837	-	hypothetical protein
836	 38.80	0	962950..964083	+	377	17228333	-	alr0838	-	hypothetical protein
837	 42.67	0	964166..965086	-	306	17228334	-	all0839	-	hypothetical protein
838	 45.34	0	965435..966517	+	360	17228335	-	alr0840	-	hypothetical protein
839	 44.71	0	966520..968988	+	822	17228336	-	alr0841	-	hypothetical protein
840	 39.51	0	969047..969289	-	80	17228337	-	asl0842	-	hypothetical protein
841	 44.07	0	969697..969873	+	58	17228338	rps21	asr0843	-	30S ribosomal protein S21
842	 44.93	0	970118..970729	-	203	17228339	-	all0844	-	peptidyl-tRNA hydrolase
843	 43.22	0	970796..971068	-	90	17228340	-	asl0845	-	hypothetical protein
844	 43.92	0	971511..971699	-	62	17228341	psbH	asl0846	-	photosystem II reaction center protein H
845	 45.45	0	971785..971916	+	43	17228342	psbN	asr0847	-	photosystem II reaction center protein N
846	 43.67	0	972004..975147	-	1047	17228343	-	all0848	-	hypothetical protein
847	 39.97	0	975416..976951	+	511	17228344	-	alr0849	-	hypothetical protein
848	 47.83	+1	977078..978022	-	314	17228345	-	all0850	-	hypothetical protein
849	 45.86	0	978239..979084	+	281	17228346	-	alr0851	-	lysophospholipase
850	 42.20	0	979397..980005	-	202	17228347	-	all0852	-	hypothetical protein
851	 43.01	0	979974..981998	-	674	17228348	-	all0853	-	two-component sensor histidine kinase
852	 48.21	+1	982688..983023	-	111	17228349	-	all0854	-	hypothetical protein
853	 42.06	0	983093..983344	+	83	17228350	-	asr0855	-	hypothetical protein
854	 46.70	+1	983425..983970	+	181	17228351	-	alr0856	-	hypothetical protein
855	 44.10	0	983987..984376	+	129	17228352	-	alr0857	-	hypothetical protein
856	 36.31	-1	984428..984763	-	111	17228353	-	all0858	-	hypothetical protein
857	 45.75	0	984790..986376	-	528	161353748	lnt	all0859	-	apolipoprotein N-acyltransferase
858	 47.54	+1	986357..988975	-	872	17228355	-	all0860	-	DNA gyrase subunit A
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.