IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 40.93	0	845403..846179	-	258	17228222	nagB	all0727	-	glucosamine-6-phosphate deaminase
726	 41.45	0	846315..846992	+	225	17228223	-	alr0728	-	hypothetical protein
727	 40.89	0	847059..851996	-	1645	17228224	-	all0729	-	two-component hybrid sensor and regulator
728	 42.56	0	852308..853120	+	270	17228225	-	alr0730	-	hypothetical protein
729	 41.51	0	853219..853842	+	207	17228226	-	alr0731	-	anaerobic ribonucleoside-triphosphate reductase activating protein
730	 40.08	0	854219..855181	-	320	17228227	-	all0732	-	transposase
731	 43.92	0	855482..855925	+	147	17228228	ureE	alr0733	-	urease accessory protein UreE
732	 42.67	0	855972..856592	+	206	17228229	-	alr0734	-	urease accessory protein F
733	 41.46	0	856652..857254	+	200	17228230	-	alr0735	-	urease accessory protein G
734	 43.27	0	857316..857969	-	217	17228231	-	all0736	-	hypothetical protein
735	 45.80	0	858039..859490	-	483	17228232	-	all0737	-	thioredoxin reductase
736	 41.86	0	859612..860538	+	308	17228233	-	alr0738	-	permease protein of sugar ABC transporter
737	 35.05	-1	861217..861798	+	193	17228234	-	alr0739	-	hypothetical protein
738	 41.52	0	861842..863368	+	508	17228235	-	alr0740	-	hypothetical protein
739	 49.84	+1	863575..863883	+	102	17228236	rbpA1	alr0741	-	RNA-binding protein
740	 44.44	0	864014..864202	+	62	17228237	rps21	asr0742	-	30S ribosomal protein S21
741	 41.99	0	864311..865951	-	546	17228238	cyaD	all0743	-	adenylate cyclase
742	 34.28	-1	866400..867884	+	494	17228239	-	alr0744	-	hypothetical protein
743	 46.03	0	868012..868893	-	293	17228240	rbgA	all0745	-	ribosomal biogenesis GTPase
744	 38.33	0	868981..869460	-	159	17228241	-	all0746	-	hypothetical protein
745	 46.27	+1	869618..870676	-	352	17228242	ccmA	all0747	-	3-deoxy-7-phosphoheptulonate synthase
746	 46.28	+1	870940..871410	-	156	17228243	-	all0748	-	hypothetical protein
747	 43.70	0	871423..871692	-	89	17228244	rpsO	asl0749	-	30S ribosomal protein S15
748	 43.28	0	871942..872484	+	180	17228245	-	alr0750	-	hypothetical protein
749	 45.86	0	872575..873069	+	164	17228246	-	alr0751	-	bidirectional hydrogenase complex protein HoxE
750	 47.09	+1	873380..875014	+	544	17228247	hoxF	alr0752	-	hydrogenase subunit
751	 43.69	0	875161..875556	-	131	17228248	-	all0753	-	hypothetical protein
752	 45.05	0	875553..875936	-	127	17228249	-	all0754	-	hypothetical protein
753	 43.12	0	875994..876269	+	91	17228250	-	asr0755	-	hypothetical protein
754	 42.32	0	876253..876519	+	88	17228251	-	asr0756	-	hypothetical protein
755	 37.14	-1	876673..876882	+	69	17228252	-	asr0757	-	hypothetical protein
756	 36.55	-1	876869..877210	+	113	17228253	-	alr0758	-	hypothetical protein
757	 39.42	0	877323..881312	-	1329	17228254	-	all0759	-	WD repeat-containing protein
758	 38.74	0	881707..883038	+	443	17228255	-	alr0760	-	hypothetical protein
759	 40.56	0	883149..883646	+	165	17228256	-	alr0761	-	hypothetical protein
760	 46.30	+1	883817..884533	+	238	17228257	hoxU	alr0762	-	bidirectional hydrogenase complex protein HoxU
761	 43.65	0	884648..885238	+	196	17228258	-	alr0763	-	hypothetical protein
762	 44.32	0	885335..885880	+	181	17228259	hoxY	alr0764	-	hydrogenase small subunit
763	 44.23	0	885959..886573	+	204	17228260	-	alr0765	-	hypothetical protein
764	 44.90	0	886799..888250	+	483	17228261	hoxH	alr0766	-	hydrogenase large subunit
765	 41.94	0	888330..888887	-	185	17228262	-	all0767	-	hypothetical protein
766	 38.96	0	889009..889896	-	295	17228263	-	all0768	-	hypothetical protein
767	 47.18	+1	889975..892725	-	916	17228264	-	all0769	-	acetyl-CoA synthetase
768	 42.56	0	893012..893488	-	158	17228265	-	all0770	-	hypothetical protein
769	 42.80	0	893746..894780	-	344	17228266	-	all0771	-	4-hydroxyphenylpyruvate dioxygenase
770	 42.07	0	895659..896276	-	205	17228267	-	all0772	-	hypothetical protein
771	 37.85	-1	896671..896958	+	95	17228268	-	asr0773	-	hypothetical protein
772	 40.83	0	897280..897666	+	128	17228269	-	alr0774	-	two-component response regulator
773	 47.23	+1	897675..899588	-	637	17228270	-	all0775	-	squalene-hopene-cyclase
774	 43.91	0	899704..900894	+	396	17228271	-	alr0776	-	hypothetical protein
775	 41.16	0	901197..901694	-	165	17228272	-	all0777	-	hypothetical protein
776	 40.36	0	901827..902951	-	374	17228273	-	all0778	-	hypothetical protein
777	 43.63	0	902951..903154	-	67	17228274	-	asl0779	-	hypothetical protein
778	 33.96	-1	903362..903520	+	52	17228275	-	asr0780	-	hypothetical protein
779	 43.93	0	903538..904962	-	474	17228276	-	all0781	-	hypothetical protein
780	 45.06	0	905282..905989	+	235	17228277	-	alr0782	-	ribulose-phosphate 3-epimerase
781	 44.52	0	906269..907198	-	309	17228278	-	all0783	-	hypothetical protein
782	 39.37	0	907716..908030	+	104	17228279	-	alr0784	-	ferredoxin
783	 44.26	0	908214..908396	+	60	17228280	-	asr0785	-	hypothetical protein
784	 45.70	0	908486..909520	+	344	17228281	-	alr0786	-	hypothetical protein
785	 43.64	0	909647..910228	+	193	17228282	-	alr0787	-	hypothetical protein
786	 44.54	0	910383..911105	-	240	17228283	purN	all0788	-	phosphoribosylglycinamide formyltransferase
787	 43.28	0	911188..912072	+	294	17228284	-	alr0789	-	ABC transporter sugar permease
788	 38.26	0	912250..913305	+	351	17228285	-	alr0790	-	hypothetical protein
789	 44.30	0	913844..916825	+	993	17228286	-	alr0791	-	outer membrane secretion protein
790	 44.14	0	916961..917404	-	147	17228287	-	all0792	-	hypothetical protein
791	 37.57	-1	917424..917612	-	62	17228288	-	asl0793	-	hypothetical protein
792	 44.53	0	917733..919367	-	544	17228289	-	all0794	-	hypothetical protein
793	 29.02	-2	919389..919643	-	84	17228290	-	asl0795	-	hypothetical protein
794	 33.22	-2	919942..921741	-	599	17228291	-	all0796	-	hypothetical protein
795	 46.46	+1	921867..922955	-	362	17228292	-	all0797	-	chorismate synthase
796	 48.97	+1	923268..923510	+	80	17228293	-	asr0798	-	hypothetical protein
797	 36.11	-1	923618..923941	+	107	17228294	-	alr0799	-	hypothetical protein
798	 39.48	0	924135..924638	-	167	17228295	-	all0800	-	molybdopterin precursor biosynthesis protein
799	 39.88	0	924715..925050	-	111	17228296	psbW	all0801	-	photosystem II reaction center protein Psb28
800	 43.33	0	925214..928345	-	1043	17228297	-	all0802	-	hypothetical protein
801	 50.23	+2	928924..930207	+	427	17228298	-	alr0803	-	hypothetical protein
802	 45.02	0	930304..930765	+	153	17228299	-	alr0804	-	hypothetical protein
803	 42.30	0	931003..931437	+	144	17228300	-	alr0805	-	hypothetical protein
804	 42.83	0	931596..932069	+	157	17228301	-	alr0806	-	hypothetical protein
805	 42.39	0	932507..933202	-	231	17228302	-	all0807	-	hypothetical protein
806	 44.30	0	933431..934597	-	388	17228303	-	all0808	-	hypothetical protein
807	 45.13	0	934676..935896	-	406	17228304	-	all0809	-	hypothetical protein
808	 42.23	0	936227..936844	+	205	17228305	-	alr0810	-	transcriptional regulator
809	 46.00	0	936980..937279	+	99	17228306	-	alr0811	-	hypothetical protein
810	 49.93	+1	937279..937977	+	232	17228307	-	alr0812	-	hypothetical protein
811	 46.11	+1	938079..940262	-	727	17228308	hglK	all0813	-	heterocyst-specific glycolipids-directing protein
812	 40.53	0	940329..940592	-	87	17228309	-	asl0814	-	hypothetical protein
813	 41.80	0	940627..940815	-	62	17228310	-	asl0815	-	hypothetical protein
814	 42.86	0	941010..941471	+	153	17228311	-	alr0816	-	hypothetical protein
815	 37.31	-1	941561..941761	-	66	17228312	-	asl0817	-	hypothetical protein
816	 41.29	0	941779..941979	-	66	17228313	-	asl0818	-	hypothetical protein
817	 39.05	0	943252..944703	+	483	17228314	-	alr0819	-	hypothetical protein
818	 44.37	0	944828..946177	+	449	17228315	-	alr0820	-	sun protein
819	 41.13	0	946235..946657	+	140	17228316	-	alr0821	-	hypothetical protein
820	 49.07	+1	946719..946934	-	71	17228317	-	asl0822	-	hypothetical protein
821	 39.68	0	947102..947479	-	125	17228318	-	all0823	-	two-component response regulator
822	 44.67	0	947549..950557	-	1002	17228319	-	all0824	-	two-component hybrid sensor and regulator
823	 42.79	0	950550..952601	-	683	17228320	-	all0825	-	two-component sensor histidine kinase
824	 38.89	0	952576..952809	-	77	17228321	-	asl0826	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.