IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
673	 45.24	0	783635..783760	+	41	17228170	-	asr0674	-	hypothetical protein
674	 38.16	0	783820..784233	-	137	17228171	-	all0675	-	hypothetical protein
675	 39.64	0	784437..795467	-	531	17228172	hupL	all0687	-	[NiFe] uptake hydrogenase large subunit
676	 35.20	-1	785653..787149	+	498	17228173	xisC	alr0677	-	hupL element site-specific recombinase
677	 38.78	0	787106..787252	-	48	17228174	-	asl0678	-	hypothetical protein
678	 37.27	-1	787330..788319	+	329	17228175	-	alr0679	-	hypothetical protein
679	 40.35	0	788689..788973	+	94	17228176	-	asr0680	-	hypothetical protein
680	 41.09	0	788970..789317	+	115	17228177	-	alr0681	-	hypothetical protein
681	 35.83	-1	789688..789927	+	79	17228178	-	asr0682	-	hypothetical protein
682	 34.98	-1	789914..790339	+	141	17228179	-	alr0683	-	hypothetical protein
683	 41.26	0	790480..792030	-	516	17228180	-	all0684	-	hypothetical protein
684	 35.95	-1	792380..792952	+	190	17228181	-	alr0685	-	hypothetical protein
685	 40.67	0	793165..794568	-	467	17228182	-	all0686	-	hypothetical protein
686	 51.30	+2	795536..796498	-	320	17228183	-	all0688	-	[NiFe] uptake hydrogenase small subunit
687	 40.45	0	796999..797265	+	88	17228184	-	asr0689	-	hypothetical protein
688	 37.78	-1	797274..797498	+	74	17228185	-	asr0690	-	hypothetical protein
689	 44.75	0	797712..798701	+	329	17228186	-	alr0691	-	hypothetical protein
690	 48.22	+1	798761..799237	+	158	17228187	-	alr0692	-	hypothetical protein
691	 46.55	+1	799264..800436	+	390	17228188	-	alr0693	-	hypothetical protein
692	 40.20	0	800536..802893	+	785	17228189	hypF	alr0694	-	hydrogenase maturation protein
693	 42.17	0	803006..803254	+	82	17228190	hupC	asr0695	-	hydrogenase expression/formation protein
694	 40.89	0	803285..804436	+	383	17228191	hupD	alr0696	-	hydrogenase expression/formation protein
695	 38.43	0	804490..804705	+	71	17228192	-	asr0697	-	hypothetical protein
696	 39.76	0	804890..805993	+	367	17228193	hupE	alr0698	-	hydrogenase expression/formation protein
697	 35.09	-1	806012..806353	+	113	17228194	hupA	alr0699	-	hydrogenase expression/formation protein
698	 38.18	0	806344..807189	+	281	17228195	hupB	alr0700	-	hydrogenase expression/formation protein
699	 42.14	0	807290..807448	+	52	17228196	-	asr0701	-	hypothetical protein
700	 45.50	0	807721..809010	+	429	17228197	-	alr0702	-	serine proteinase
701	 39.78	0	809102..809473	-	123	17228198	-	all0703	-	hypothetical protein
702	 42.03	0	809775..811856	+	693	17228199	-	alr0704	-	hypothetical protein
703	 58.49	+2	811838..811996	+	52	17228200	-	asr0705	-	hypothetical protein
704	 43.26	0	811999..812985	-	328	17228201	-	all0706	-	hypothetical protein
705	 39.11	0	813020..814420	-	466	17228202	-	all0707	-	two-component sensor histidine kinase
706	 41.71	0	814582..815142	-	186	17228203	-	all0708	-	hypothetical protein
707	 39.64	0	815625..821015	+	1796	17228204	-	alr0709	-	serine/threonine kinase protein
708	 40.39	0	821088..826487	+	1799	17228205	-	alr0710	-	serine/threonine kinase protein
709	 38.43	0	826761..828683	-	640	17228206	-	all0711	-	hypothetical protein
710	 39.44	0	828696..829595	-	299	17228207	-	all0712	-	hypothetical protein
711	 44.31	0	829874..832168	-	764	17228208	glgB	all0713	-	glycogen branching enzyme
712	 41.38	0	832518..832865	-	115	17228209	-	all0714	-	hypothetical protein
713	 53.80	+2	833700..833870	-	56	17228210	-	asl0715	-	hypothetical protein
714	 41.36	0	834089..834250	-	53	17228211	-	asl0716	-	hypothetical protein
715	 43.81	0	834368..835045	+	225	17228212	-	alr0717	-	hypothetical protein
716	 45.25	0	835215..837044	+	609	17228213	-	alr0718	-	penicillin-binding protein
717	 44.33	0	837144..838325	+	393	17228214	-	alr0719	-	hypothetical protein
718	 32.77	-2	838429..839139	+	236	17228215	-	alr0720	-	hypothetical protein
719	 36.01	-1	839254..840372	-	372	17228216	-	all0721	-	hypothetical protein
720	 37.79	-1	840515..841435	+	306	17228217	-	alr0722	-	hypothetical protein
721	 42.40	0	841462..842553	-	363	17228218	-	all0723	-	translation-associated GTPase
722	 50.90	+2	842575..842796	-	73	17228219	-	asl0724	-	hypothetical protein
723	 34.45	-1	842987..843433	+	148	17228220	-	alr0725	-	hypothetical protein
724	 33.46	-2	843419..844993	-	524	17228221	-	all0726	-	hypothetical protein
725	 40.93	0	845403..846179	-	258	17228222	nagB	all0727	-	glucosamine-6-phosphate deaminase
726	 41.45	0	846315..846992	+	225	17228223	-	alr0728	-	hypothetical protein
727	 40.89	0	847059..851996	-	1645	17228224	-	all0729	-	two-component hybrid sensor and regulator
728	 42.56	0	852308..853120	+	270	17228225	-	alr0730	-	hypothetical protein
729	 41.51	0	853219..853842	+	207	17228226	-	alr0731	-	anaerobic ribonucleoside-triphosphate reductase activating protein
730	 40.08	0	854219..855181	-	320	17228227	-	all0732	-	transposase
731	 43.92	0	855482..855925	+	147	17228228	ureE	alr0733	-	urease accessory protein UreE
732	 42.67	0	855972..856592	+	206	17228229	-	alr0734	-	urease accessory protein F
733	 41.46	0	856652..857254	+	200	17228230	-	alr0735	-	urease accessory protein G
734	 43.27	0	857316..857969	-	217	17228231	-	all0736	-	hypothetical protein
735	 45.80	0	858039..859490	-	483	17228232	-	all0737	-	thioredoxin reductase
736	 41.86	0	859612..860538	+	308	17228233	-	alr0738	-	permease protein of sugar ABC transporter
737	 35.05	-1	861217..861798	+	193	17228234	-	alr0739	-	hypothetical protein
738	 41.52	0	861842..863368	+	508	17228235	-	alr0740	-	hypothetical protein
739	 49.84	+1	863575..863883	+	102	17228236	rbpA1	alr0741	-	RNA-binding protein
740	 44.44	0	864014..864202	+	62	17228237	rps21	asr0742	-	30S ribosomal protein S21
741	 41.99	0	864311..865951	-	546	17228238	cyaD	all0743	-	adenylate cyclase
742	 34.28	-1	866400..867884	+	494	17228239	-	alr0744	-	hypothetical protein
743	 46.03	0	868012..868893	-	293	17228240	rbgA	all0745	-	ribosomal biogenesis GTPase
744	 38.33	0	868981..869460	-	159	17228241	-	all0746	-	hypothetical protein
745	 46.27	+1	869618..870676	-	352	17228242	ccmA	all0747	-	3-deoxy-7-phosphoheptulonate synthase
746	 46.28	+1	870940..871410	-	156	17228243	-	all0748	-	hypothetical protein
747	 43.70	0	871423..871692	-	89	17228244	rpsO	asl0749	-	30S ribosomal protein S15
748	 43.28	0	871942..872484	+	180	17228245	-	alr0750	-	hypothetical protein
749	 45.86	0	872575..873069	+	164	17228246	-	alr0751	-	bidirectional hydrogenase complex protein HoxE
750	 47.09	+1	873380..875014	+	544	17228247	hoxF	alr0752	-	hydrogenase subunit
751	 43.69	0	875161..875556	-	131	17228248	-	all0753	-	hypothetical protein
752	 45.05	0	875553..875936	-	127	17228249	-	all0754	-	hypothetical protein
753	 43.12	0	875994..876269	+	91	17228250	-	asr0755	-	hypothetical protein
754	 42.32	0	876253..876519	+	88	17228251	-	asr0756	-	hypothetical protein
755	 37.14	-1	876673..876882	+	69	17228252	-	asr0757	-	hypothetical protein
756	 36.55	-1	876869..877210	+	113	17228253	-	alr0758	-	hypothetical protein
757	 39.42	0	877323..881312	-	1329	17228254	-	all0759	-	WD repeat-containing protein
758	 38.74	0	881707..883038	+	443	17228255	-	alr0760	-	hypothetical protein
759	 40.56	0	883149..883646	+	165	17228256	-	alr0761	-	hypothetical protein
760	 46.30	+1	883817..884533	+	238	17228257	hoxU	alr0762	-	bidirectional hydrogenase complex protein HoxU
761	 43.65	0	884648..885238	+	196	17228258	-	alr0763	-	hypothetical protein
762	 44.32	0	885335..885880	+	181	17228259	hoxY	alr0764	-	hydrogenase small subunit
763	 44.23	0	885959..886573	+	204	17228260	-	alr0765	-	hypothetical protein
764	 44.90	0	886799..888250	+	483	17228261	hoxH	alr0766	-	hydrogenase large subunit
765	 41.94	0	888330..888887	-	185	17228262	-	all0767	-	hypothetical protein
766	 38.96	0	889009..889896	-	295	17228263	-	all0768	-	hypothetical protein
767	 47.18	+1	889975..892725	-	916	17228264	-	all0769	-	acetyl-CoA synthetase
768	 42.56	0	893012..893488	-	158	17228265	-	all0770	-	hypothetical protein
769	 42.80	0	893746..894780	-	344	17228266	-	all0771	-	4-hydroxyphenylpyruvate dioxygenase
770	 42.07	0	895659..896276	-	205	17228267	-	all0772	-	hypothetical protein
771	 37.85	-1	896671..896958	+	95	17228268	-	asr0773	-	hypothetical protein
772	 40.83	0	897280..897666	+	128	17228269	-	alr0774	-	two-component response regulator
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.