IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
637	 46.08	0	738640..741102	-	820	17228134	-	all0638	-	two-component hybrid sensor and regulator
638	 37.39	-1	741821..742042	-	73	17228135	-	asl0639	-	hypothetical protein
639	 44.00	0	742333..743973	-	546	17228136	-	all0640	-	ATP-binding protein of ABC transporter
640	 42.33	0	744200..744499	-	99	17228137	-	all0641	-	hypothetical protein
641	 40.99	0	744780..746987	+	735	17228138	-	alr0642	-	two-component sensor histidine kinase
642	 45.56	0	747211..747930	+	239	17228139	-	alr0643	-	MotA/TolQ/ExbB proton channel family protein
643	 43.73	0	748097..748750	+	217	17228140	-	alr0644	-	hypothetical protein
644	 39.78	0	749082..749438	+	118	17228141	-	alr0645	-	hypothetical protein
645	 43.87	0	749516..750217	-	233	17228142	-	all0646	-	Thf1-like protein
646	 44.72	0	750755..751351	+	198	17228143	-	alr0647	-	hypothetical protein
647	 40.65	0	751536..751904	-	122	17228144	-	all0648	-	hypothetical protein
648	 33.33	-2	751964..752071	+	35	17228145	-	asr0649	-	hypothetical protein
649	 46.44	+1	752319..753272	-	317	17228146	hemF	all0650	-	coproporphyrinogen III oxidase
650	 43.43	0	753870..754394	+	174	17228147	-	alr0651	-	hypothetical protein
651	 46.03	0	754691..755761	+	356	17228148	-	alr0652	-	hypothetical protein
652	 43.20	0	756086..757402	+	438	17228149	-	alr0653	-	hypothetical protein
653	 40.40	0	757507..757704	+	65	17228150	-	asr0654	-	hypothetical protein
654	 46.63	+1	757848..758441	+	197	17228151	-	alr0655	-	hypothetical protein
655	 42.17	0	758587..760725	+	712	17228152	-	alr0656	-	Na+/H+ antiporter
656	 43.91	0	761010..761945	+	311	17228153	rfbB	alr0657	-	dTDP-glucose 4-6-dehydratase
657	 45.82	0	762102..763487	+	461	17228154	-	alr0658	-	UDP-glucose dehydrogenase
658	 42.46	0	763575..764045	-	156	17228155	-	all0659	-	hypothetical protein
659	 38.10	0	764050..764196	-	48	17228156	-	asl0660	-	hypothetical protein
660	 41.51	0	764231..765649	-	472	17228157	-	all0661	-	adenylate cyclase
661	 33.89	-1	766473..766652	-	59	17228158	-	asl0662	-	hypothetical protein
662	 39.23	0	767105..769003	+	632	17228159	-	alr0663	-	hypothetical protein
663	 44.31	0	769057..771861	-	934	17228160	-	all0664	-	WD-40 repeat-containing protein
664	 42.02	0	771779..773689	-	636	17228161	-	all0665	-	hypothetical protein
665	 32.00	-2	774303..775349	-	348	17228162	-	all0666	-	hypothetical protein
666	 37.14	-1	775547..776992	-	481	17228163	-	all0667	-	hypothetical protein
667	 40.20	0	777620..778216	+	198	17228164	-	alr0668	-	hypothetical protein
668	 38.40	0	778393..779280	+	295	17228165	-	alr0669	-	hypothetical protein
669	 35.90	-1	780208..780402	+	64	17228166	-	asr0670	-	hypothetical protein
670	 45.86	0	780750..781547	+	265	17228167	-	alr0671	-	WD repeat-containing protein
671	 46.24	+1	781917..783218	+	433	17228168	-	alr0672	-	hypothetical protein
672	 46.83	+1	783290..783415	-	41	17228169	-	asl0673	-	hypothetical protein
673	 45.24	0	783635..783760	+	41	17228170	-	asr0674	-	hypothetical protein
674	 38.16	0	783820..784233	-	137	17228171	-	all0675	-	hypothetical protein
675	 39.64	0	784437..795467	-	531	17228172	hupL	all0687	-	[NiFe] uptake hydrogenase large subunit
676	 35.20	-1	785653..787149	+	498	17228173	xisC	alr0677	-	hupL element site-specific recombinase
677	 38.78	0	787106..787252	-	48	17228174	-	asl0678	-	hypothetical protein
678	 37.27	-1	787330..788319	+	329	17228175	-	alr0679	-	hypothetical protein
679	 40.35	0	788689..788973	+	94	17228176	-	asr0680	-	hypothetical protein
680	 41.09	0	788970..789317	+	115	17228177	-	alr0681	-	hypothetical protein
681	 35.83	-1	789688..789927	+	79	17228178	-	asr0682	-	hypothetical protein
682	 34.98	-1	789914..790339	+	141	17228179	-	alr0683	-	hypothetical protein
683	 41.26	0	790480..792030	-	516	17228180	-	all0684	-	hypothetical protein
684	 35.95	-1	792380..792952	+	190	17228181	-	alr0685	-	hypothetical protein
685	 40.67	0	793165..794568	-	467	17228182	-	all0686	-	hypothetical protein
686	 51.30	+2	795536..796498	-	320	17228183	-	all0688	-	[NiFe] uptake hydrogenase small subunit
687	 40.45	0	796999..797265	+	88	17228184	-	asr0689	-	hypothetical protein
688	 37.78	-1	797274..797498	+	74	17228185	-	asr0690	-	hypothetical protein
689	 44.75	0	797712..798701	+	329	17228186	-	alr0691	-	hypothetical protein
690	 48.22	+1	798761..799237	+	158	17228187	-	alr0692	-	hypothetical protein
691	 46.55	+1	799264..800436	+	390	17228188	-	alr0693	-	hypothetical protein
692	 40.20	0	800536..802893	+	785	17228189	hypF	alr0694	-	hydrogenase maturation protein
693	 42.17	0	803006..803254	+	82	17228190	hupC	asr0695	-	hydrogenase expression/formation protein
694	 40.89	0	803285..804436	+	383	17228191	hupD	alr0696	-	hydrogenase expression/formation protein
695	 38.43	0	804490..804705	+	71	17228192	-	asr0697	-	hypothetical protein
696	 39.76	0	804890..805993	+	367	17228193	hupE	alr0698	-	hydrogenase expression/formation protein
697	 35.09	-1	806012..806353	+	113	17228194	hupA	alr0699	-	hydrogenase expression/formation protein
698	 38.18	0	806344..807189	+	281	17228195	hupB	alr0700	-	hydrogenase expression/formation protein
699	 42.14	0	807290..807448	+	52	17228196	-	asr0701	-	hypothetical protein
700	 45.50	0	807721..809010	+	429	17228197	-	alr0702	-	serine proteinase
701	 39.78	0	809102..809473	-	123	17228198	-	all0703	-	hypothetical protein
702	 42.03	0	809775..811856	+	693	17228199	-	alr0704	-	hypothetical protein
703	 58.49	+2	811838..811996	+	52	17228200	-	asr0705	-	hypothetical protein
704	 43.26	0	811999..812985	-	328	17228201	-	all0706	-	hypothetical protein
705	 39.11	0	813020..814420	-	466	17228202	-	all0707	-	two-component sensor histidine kinase
706	 41.71	0	814582..815142	-	186	17228203	-	all0708	-	hypothetical protein
707	 39.64	0	815625..821015	+	1796	17228204	-	alr0709	-	serine/threonine kinase protein
708	 40.39	0	821088..826487	+	1799	17228205	-	alr0710	-	serine/threonine kinase protein
709	 38.43	0	826761..828683	-	640	17228206	-	all0711	-	hypothetical protein
710	 39.44	0	828696..829595	-	299	17228207	-	all0712	-	hypothetical protein
711	 44.31	0	829874..832168	-	764	17228208	glgB	all0713	-	glycogen branching enzyme
712	 41.38	0	832518..832865	-	115	17228209	-	all0714	-	hypothetical protein
713	 53.80	+2	833700..833870	-	56	17228210	-	asl0715	-	hypothetical protein
714	 41.36	0	834089..834250	-	53	17228211	-	asl0716	-	hypothetical protein
715	 43.81	0	834368..835045	+	225	17228212	-	alr0717	-	hypothetical protein
716	 45.25	0	835215..837044	+	609	17228213	-	alr0718	-	penicillin-binding protein
717	 44.33	0	837144..838325	+	393	17228214	-	alr0719	-	hypothetical protein
718	 32.77	-2	838429..839139	+	236	17228215	-	alr0720	-	hypothetical protein
719	 36.01	-1	839254..840372	-	372	17228216	-	all0721	-	hypothetical protein
720	 37.79	-1	840515..841435	+	306	17228217	-	alr0722	-	hypothetical protein
721	 42.40	0	841462..842553	-	363	17228218	-	all0723	-	translation-associated GTPase
722	 50.90	+2	842575..842796	-	73	17228219	-	asl0724	-	hypothetical protein
723	 34.45	-1	842987..843433	+	148	17228220	-	alr0725	-	hypothetical protein
724	 33.46	-2	843419..844993	-	524	17228221	-	all0726	-	hypothetical protein
725	 40.93	0	845403..846179	-	258	17228222	nagB	all0727	-	glucosamine-6-phosphate deaminase
726	 41.45	0	846315..846992	+	225	17228223	-	alr0728	-	hypothetical protein
727	 40.89	0	847059..851996	-	1645	17228224	-	all0729	-	two-component hybrid sensor and regulator
728	 42.56	0	852308..853120	+	270	17228225	-	alr0730	-	hypothetical protein
729	 41.51	0	853219..853842	+	207	17228226	-	alr0731	-	anaerobic ribonucleoside-triphosphate reductase activating protein
730	 40.08	0	854219..855181	-	320	17228227	-	all0732	-	transposase
731	 43.92	0	855482..855925	+	147	17228228	ureE	alr0733	-	urease accessory protein UreE
732	 42.67	0	855972..856592	+	206	17228229	-	alr0734	-	urease accessory protein F
733	 41.46	0	856652..857254	+	200	17228230	-	alr0735	-	urease accessory protein G
734	 43.27	0	857316..857969	-	217	17228231	-	all0736	-	hypothetical protein
735	 45.80	0	858039..859490	-	483	17228232	-	all0737	-	thioredoxin reductase
736	 41.86	0	859612..860538	+	308	17228233	-	alr0738	-	permease protein of sugar ABC transporter
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.