IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
564	 34.47	-1	659511..659951	-	146	17228061	-	all0565	-	hypothetical protein
565	 43.82	0	660534..661172	+	212	17228062	-	alr0566	-	hypothetical protein
566	 36.66	-1	661198..662190	-	330	17228063	-	all0567	-	hypothetical protein
567	 37.92	0	662555..663622	+	355	17228064	-	alr0568	-	hypothetical protein
568	 43.95	0	663619..664023	-	134	17228065	-	all0569	-	hypothetical protein
569	 43.52	0	664184..664762	+	192	17228066	txlA	alr0570	-	thioredoxin-like protein
570	 43.99	0	664868..665749	-	293	17228067	-	all0571	-	cyanophycinase
571	 40.35	0	666084..666311	-	75	17228068	-	asl0572	-	hypothetical protein
572	 41.97	0	666663..668573	+	636	17228069	cphA	alr0573	-	cyanophycin synthetase
573	 38.11	0	668619..669749	-	376	17228070	aroF	all0574	-	phospho-2-dehydro-3-deoxyheptonate aldolase
574	 40.32	0	669829..670143	-	104	17228071	-	all0575	-	hypothetical protein
575	 44.44	0	670275..670598	+	107	17228072	-	alr0576	-	hypothetical protein
576	 45.58	0	670707..671204	+	165	17228073	-	alr0577	-	FKBP-type peptidyl-prolyl cis-trans isomerase
577	 40.34	0	671284..673923	-	879	17228074	dnaB	all0578	-	replicative DNA helicase
578	 43.79	0	674056..674514	-	152	17228075	rplI	all0579	-	50S ribosomal protein L9
579	 44.83	0	674746..675519	-	257	17228076	-	all0580	-	hypothetical protein
580	 38.53	0	675943..676173	+	76	17228077	-	asr0581	-	hypothetical protein
581	 40.43	0	676349..677545	+	398	17228078	-	alr0582	-	hypothetical protein
582	 39.05	0	677653..679893	+	746	17228079	-	alr0583	-	ATP-binding protein of ABC transporter
583	 37.91	0	679928..681130	+	400	17228080	-	alr0584	-	hypothetical protein
584	 38.56	0	681153..682127	+	324	17228081	-	alr0585	-	hypothetical protein
585	 35.74	-1	682169..683164	+	331	17228082	-	alr0586	-	hypothetical protein
586	 37.71	-1	683166..684101	+	311	17228083	-	alr0587	-	hypothetical protein
587	 33.96	-1	684479..684637	-	52	17228084	-	asl0588	-	transposase
588	 33.23	-2	684721..685728	-	335	17228085	-	all0589	-	hypothetical protein
589	 39.44	0	685900..686505	+	201	17228086	-	alr0590	-	transposase
590	 36.83	-1	686901..687272	-	123	17228087	-	all0591	-	hypothetical protein
591	 43.92	0	687329..689047	-	572	17228088	-	all0592	-	hypothetical protein
592	 42.95	0	689504..690595	+	363	17228089	-	alr0593	-	hypothetical protein
593	 44.98	0	690698..693298	-	866	17228090	-	all0594	-	aminopeptidase
594	 39.90	0	693462..693659	-	65	17228091	-	asl0595	-	hypothetical protein
595	 40.30	0	693751..694410	-	219	17228092	-	all0596	-	hypothetical protein
596	 41.09	0	694477..694734	-	85	17228093	-	asl0597	-	hypothetical protein
597	 42.53	0	695051..695746	+	231	17228094	-	alr0598	-	hypothetical protein
598	 46.59	+1	696196..698103	+	635	17228095	-	alr0599	-	1-deoxy-D-xylulose-5-phosphate synthase
599	 40.29	0	698393..698881	+	162	17228096	-	alr0600	-	hypothetical protein
600	 43.88	0	698999..700069	-	356	17228097	-	all0601	-	hypothetical protein
601	 46.54	+1	700280..701218	-	312	17228098	ntcB	all0602	-	nitrogen assimilation transcriptional activator
602	 40.20	0	701461..701766	-	101	17228099	-	all0603	-	hypothetical protein
603	 45.56	0	701763..702122	-	119	17228100	-	all0604	-	hypothetical protein
604	 41.85	0	702283..703479	-	398	17228101	-	all0605	-	hypothetical protein
605	 47.20	+1	703623..704033	-	136	17228102	petC	all0606	-	cytochrome b6/f-complex iron-sulfur protein
606	 45.62	0	704679..706289	+	536	17228103	nirA	alr0607	-	ferredoxin-nitrite reductase
607	 42.78	0	706423..707745	+	440	17228104	nrtA	alr0608	-	nitrate transport nitrate-binding protein
608	 40.00	0	707802..708641	+	279	17228105	nrtB	alr0609	-	nitrate transport permease protein
609	 46.15	+1	708712..710685	+	657	17228106	nrtC	alr0610	-	nitrate transport ATP-binding protein
610	 47.72	+1	710765..711598	+	277	17228107	nrtD	alr0611	-	nitrate transport ATP-binding protein
611	 46.90	+1	711707..713947	+	746	17228108	narB	alr0612	-	nitrate reductase
612	 31.62	-2	714204..714671	+	155	17228109	-	alr0613	-	hypothetical protein
613	 39.83	0	714771..715232	+	153	17228110	-	alr0614	-	hypothetical protein
614	 45.29	0	715818..716369	-	183	17228111	-	all0615	-	hypothetical protein
615	 44.49	0	716601..717281	+	226	17228112	-	alr0616	-	hypothetical protein
616	 46.21	+1	717353..717919	+	188	17228113	-	alr0617	-	hypothetical protein
617	 43.90	0	718010..718738	+	242	17228114	-	alr0618	-	hypothetical protein
618	 42.86	0	718745..719248	-	167	17228115	-	all0619	-	hypothetical protein
619	 37.87	-1	719275..719649	-	124	17228116	-	all0620	-	hypothetical protein
620	 40.84	0	719661..720446	-	261	17228117	-	all0621	-	hypothetical protein
621	 37.41	-1	720570..722213	+	547	17228118	-	alr0622	-	hypothetical protein
622	 37.84	-1	722342..723694	-	450	17228119	-	all0623	-	glycolate oxidase subunit (Fe-S) protein
623	 44.37	0	723731..725026	-	431	17228120	glcE	all0624	-	glycolate oxidase subunit
624	 40.37	0	725168..725878	-	236	17228121	-	all0625	-	hypothetical protein
625	 47.80	+1	725963..727054	-	363	17228122	-	all0626	-	H+/Ca2+ exchanger
626	 45.81	0	727672..730395	+	907	17228123	-	alr0627	-	hypothetical protein
627	 37.94	0	730457..730738	-	93	17228124	-	asl0628	-	hypothetical protein
628	 36.99	-1	730745..730990	-	81	17228125	-	asl0629	-	hypothetical protein
629	 31.01	-2	730987..731373	-	128	17228126	-	all0630	-	hypothetical protein
630	 34.61	-1	731527..731919	-	130	17228127	-	all0631	-	hypothetical protein
631	 43.96	0	732144..733046	-	300	17228128	-	all0632	-	hypothetical protein
632	 40.61	0	733049..733213	-	54	17228129	-	asl0633	-	hypothetical protein
633	 40.61	0	733440..733961	-	173	17228130	-	all0634	-	hypothetical protein
634	 44.36	0	734053..736518	-	821	17228131	-	all0635	-	phosphoenolpyruvate synthase
635	 42.75	0	736855..737109	+	84	17228132	-	asr0636	-	hypothetical protein
636	 41.38	0	737168..738484	-	438	17228133	-	all0637	-	two-component hybrid sensor and regulator
637	 46.08	0	738640..741102	-	820	17228134	-	all0638	-	two-component hybrid sensor and regulator
638	 37.39	-1	741821..742042	-	73	17228135	-	asl0639	-	hypothetical protein
639	 44.00	0	742333..743973	-	546	17228136	-	all0640	-	ATP-binding protein of ABC transporter
640	 42.33	0	744200..744499	-	99	17228137	-	all0641	-	hypothetical protein
641	 40.99	0	744780..746987	+	735	17228138	-	alr0642	-	two-component sensor histidine kinase
642	 45.56	0	747211..747930	+	239	17228139	-	alr0643	-	MotA/TolQ/ExbB proton channel family protein
643	 43.73	0	748097..748750	+	217	17228140	-	alr0644	-	hypothetical protein
644	 39.78	0	749082..749438	+	118	17228141	-	alr0645	-	hypothetical protein
645	 43.87	0	749516..750217	-	233	17228142	-	all0646	-	Thf1-like protein
646	 44.72	0	750755..751351	+	198	17228143	-	alr0647	-	hypothetical protein
647	 40.65	0	751536..751904	-	122	17228144	-	all0648	-	hypothetical protein
648	 33.33	-2	751964..752071	+	35	17228145	-	asr0649	-	hypothetical protein
649	 46.44	+1	752319..753272	-	317	17228146	hemF	all0650	-	coproporphyrinogen III oxidase
650	 43.43	0	753870..754394	+	174	17228147	-	alr0651	-	hypothetical protein
651	 46.03	0	754691..755761	+	356	17228148	-	alr0652	-	hypothetical protein
652	 43.20	0	756086..757402	+	438	17228149	-	alr0653	-	hypothetical protein
653	 40.40	0	757507..757704	+	65	17228150	-	asr0654	-	hypothetical protein
654	 46.63	+1	757848..758441	+	197	17228151	-	alr0655	-	hypothetical protein
655	 42.17	0	758587..760725	+	712	17228152	-	alr0656	-	Na+/H+ antiporter
656	 43.91	0	761010..761945	+	311	17228153	rfbB	alr0657	-	dTDP-glucose 4-6-dehydratase
657	 45.82	0	762102..763487	+	461	17228154	-	alr0658	-	UDP-glucose dehydrogenase
658	 42.46	0	763575..764045	-	156	17228155	-	all0659	-	hypothetical protein
659	 38.10	0	764050..764196	-	48	17228156	-	asl0660	-	hypothetical protein
660	 41.51	0	764231..765649	-	472	17228157	-	all0661	-	adenylate cyclase
661	 33.89	-1	766473..766652	-	59	17228158	-	asl0662	-	hypothetical protein
662	 39.23	0	767105..769003	+	632	17228159	-	alr0663	-	hypothetical protein
663	 44.31	0	769057..771861	-	934	17228160	-	all0664	-	WD-40 repeat-containing protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.