IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4073	 39.45	0	4908488..4910614	-	708	17231570	-	all4078	-	hypothetical protein
4074	 44.71	0	4910728..4911228	+	166	17231571	-	alr4079	-	hypothetical protein
4075	 43.39	0	4911332..4912981	-	549	17231572	-	all4080	-	ribosomal large chain pseudouridine synthase A
4076	 41.30	0	4913135..4914427	-	430	17231573	-	all4081	-	hypothetical protein
4077	 43.92	0	4920599..4921231	+	210	17231574	-	alr4082	-	transposase
4078	 44.00	0	4921313..4923271	-	652	17231575	-	all4083	-	hypothetical protein
4079	 43.64	0	4923324..4923905	-	193	17231576	-	all4084	-	hypothetical protein
4080	 41.29	0	4924034..4924699	-	221	17231577	-	all4085	-	endonuclease V
4081	 38.01	0	4924859..4925350	+	163	17231578	-	alr4086	-	hypothetical protein
4082	 43.90	0	4925465..4925833	-	122	17231579	-	all4087	-	protein kinase C inhibitor
4083	 46.14	+1	4925883..4927412	+	509	17231580	comM	alr4088	-	competence protein
4084	 39.12	0	4927444..4928220	-	258	17231581	-	all4089	-	hypothetical protein
4085	 40.36	0	4928362..4929486	-	374	17231582	-	all4090	-	hypothetical protein
4086	 31.64	-2	4929551..4929727	-	58	17231583	-	asl4091	-	hypothetical protein
4087	 35.73	-1	4929939..4930982	-	347	17231584	-	all4092	-	hypothetical protein
4088	 40.24	0	4931477..4931722	+	81	17231585	-	asr4093	-	hypothetical protein
4089	 43.41	0	4932447..4933676	+	409	17231586	-	alr4094	-	NADH dehydrogenase
4090	 42.09	0	4933759..4934409	+	216	17231587	-	alr4095	-	hypothetical protein
4091	 40.62	0	4934422..4935492	-	356	17231588	-	all4096	-	two-component hybrid sensor and regulator
4092	 42.41	0	4935546..4938443	-	965	17231589	-	all4097	-	two-component hybrid sensor and regulator
4093	 45.64	0	4938915..4939109	-	64	17231590	-	asl4098	-	hypothetical protein
4094	 39.15	0	4939577..4940470	+	297	17231591	-	alr4099	-	transcriptional regulator
4095	 44.17	0	4940632..4941369	+	245	17231592	-	alr4100	-	hypothetical protein
4096	 40.62	0	4941471..4941854	-	127	17231593	-	all4101	-	hypothetical protein
4097	 40.99	0	4942035..4943210	-	391	17231594	-	all4102	-	hypothetical protein
4098	 43.71	0	4943340..4944023	-	227	17231595	ribG	all4103	-	riboflavin-specific deaminase
4099	 46.48	+1	4944752..4945960	+	402	17231596	-	alr4104	-	transposase
4100	 37.51	-1	4946264..4947916	+	550	17231597	-	alr4105	-	two-component sensor histidine kinase
4101	 45.38	0	4947976..4949046	-	356	17231598	-	all4106	-	hypothetical protein
4102	 47.78	+1	4949468..4950076	-	202	17231599	-	all4107	-	ribonuclease III
4103	 42.22	0	4950121..4950300	+	59	17231600	-	asr4108	-	hypothetical protein
4104	 37.99	0	4950856..4951563	-	235	17231601	-	all4109	-	hypothetical protein
4105	 42.87	0	4951626..4952768	-	380	17231602	-	all4110	-	hypothetical protein
4106	 44.96	0	4952980..4955130	+	716	17231603	glyS	alr4111	-	glycyl-tRNA synthetase subunit beta
4107	 47.59	+1	4955215..4956603	+	462	17231604	murD	alr4112	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
4108	 47.69	+1	4956600..4957184	-	194	17231605	-	all4113	-	hypothetical protein
4109	 42.19	0	4957398..4957871	+	157	17231606	-	alr4114	-	hypothetical protein
4110	 42.62	0	4958087..4958560	+	157	17231607	-	alr4115	-	hypothetical protein
4111	 44.68	0	4958569..4959273	-	234	17231608	-	all4116	-	hypothetical protein
4112	 41.26	0	4959447..4960682	-	411	17231609	-	all4117	-	hypothetical protein
4113	 40.56	0	4960898..4961437	-	179	17231610	-	all4118	-	hypothetical protein
4114	 40.41	0	4962145..4962582	+	145	17231611	-	alr4119	-	hypothetical protein
4115	 46.51	+1	4962715..4964004	-	429	17231612	thrA	all4120	-	homoserine dehydrogenase
4116	 44.29	0	4964228..4965550	-	440	17231613	petH	all4121	-	ferredoxin--NADP(+) reductase
4117	 39.51	0	4966538..4966699	-	53	17231614	-	asl4122	-	hypothetical protein
4118	 43.78	0	4966719..4967723	+	334	17231615	prk	alr4123	-	phosphoribulokinase
4119	 46.79	+1	4967988..4969250	+	420	161353738	-	alr4124	-	S-adenosylmethionine synthetase
4120	 43.67	0	4969302..4970849	-	515	17231617	-	all4125	-	hypothetical protein
4121	 43.78	0	4971074..4972318	-	414	17231618	-	all4126	-	dolichol-phosphate mannosyltransferase
4122	 39.76	0	4972867..4974561	-	564	17231619	-	all4127	-	hypothetical protein
4123	 34.72	-1	4975087..4976673	-	528	17231620	-	all4128	-	hypothetical protein
4124	 45.32	0	4976929..4978104	+	391	17231621	-	alr4129	-	FO synthase subunit 2
4125	 41.17	0	4978161..4979066	-	301	17231622	-	all4130	-	binding protein of ABC transporter component
4126	 46.47	+1	4979255..4980457	-	400	17231623	pgk	all4131	-	phosphoglycerate kinase
4127	 48.04	+1	4980547..4980954	+	135	17231624	-	alr4132	-	hypothetical protein
4128	 39.46	0	4981058..4981351	+	97	17231625	-	asr4133	-	hypothetical protein
4129	 36.29	-1	4981348..4981719	+	123	17231626	-	alr4134	-	hypothetical protein
4130	 36.95	-1	4981889..4982275	-	128	17231627	-	all4135	-	hypothetical protein
4131	 39.91	0	4982272..4982499	-	75	17231628	-	asl4136	-	hypothetical protein
4132	 44.58	0	4982831..4983070	-	79	17231629	-	asl4137	-	hypothetical protein
4133	 43.77	0	4983105..4983401	-	98	17231630	-	asl4138	-	hypothetical protein
4134	 37.80	-1	4983553..4984269	-	238	17231631	-	all4139	-	hypothetical protein
4135	 47.63	+1	4984481..4986271	-	596	17231632	typA	all4140	-	GTP-binding protein TypA
4136	 36.75	-1	4986552..4987664	+	370	17231633	-	alr4141	-	serine/threonine kinase
4137	 35.96	-1	4987813..4988382	-	189	17231634	-	all4142	-	hypothetical protein
4138	 39.58	0	4988397..4988972	-	191	17231635	-	all4143	-	hypothetical protein
4139	 45.12	0	4989024..4989668	-	214	17231636	-	all4144	-	hypothetical protein
4140	 44.72	0	4989760..4990251	-	163	17231637	-	all4145	-	hypothetical protein
4141	 42.42	0	4990365..4990628	-	87	17231638	-	asl4146	-	hypothetical protein
4142	 41.13	0	4990744..4992411	+	555	17231639	-	alr4147	-	amidase enhancer
4143	 43.00	0	4992505..4992804	-	99	17231640	petF	all4148	-	ferredoxin I
4144	 42.83	0	4993218..4994186	+	322	17231641	bvdR	alr4149	-	biliverdin reductase
4145	 46.82	+1	4994192..4994962	+	256	17231642	-	alr4150	-	methionine aminopeptidase
4146	 40.57	0	4994979..4995641	+	220	17231643	-	alr4151	-	hypothetical protein
4147	 46.19	+1	4995638..4996990	-	450	17231644	-	all4152	-	hypothetical protein
4148	 40.73	0	4997078..4997902	+	274	17231645	-	alr4153	-	hypothetical protein
4149	 41.40	0	4997970..4998155	+	61	17231646	-	asr4154	-	hypothetical protein
4150	 38.47	0	4998359..4999195	-	278	17231647	-	all4155	-	hypothetical protein
4151	 42.46	0	4999616..5001478	+	620	17231648	ndhF	alr4156	-	NAD(P)H-quinone oxidoreductase subunit F
4152	 42.98	0	5001570..5003072	+	500	17231649	ndhD	alr4157	-	NAD(P)H-quinone oxidoreductase subunit M
4153	 41.38	0	5003292..5004620	+	442	17231650	-	alr4158	-	hypothetical protein
4154	 32.77	-2	5004817..5005710	-	297	17231651	-	all4159	-	hypothetical protein
4155	 40.34	0	5006384..5007439	-	351	17231652	-	all4160	-	hypothetical protein
4156	 46.04	0	5007627..5008421	+	264	17231653	-	alr4161	-	hypothetical protein
4157	 46.17	+1	5008657..5009295	-	212	17231654	-	all4162	-	hypothetical protein
4158	 41.33	0	5009482..5010081	-	199	17231655	-	all4163	-	hypothetical protein
4159	 44.77	0	5010491..5011600	+	369	17231656	-	alr4164	-	periplasmic amino acid-binding protein of amino acid ABC transporter
4160	 40.35	0	5011668..5012594	+	308	17231657	-	alr4165	-	permease protein of amino acid ABC transporter
4161	 41.36	0	5012632..5013777	+	381	17231658	-	alr4166	-	permease protein of amino acid ABC transporter
4162	 44.58	0	5013793..5014539	+	248	17231659	-	alr4167	-	ATP-binding protein of amino acid ABC transporter
4163	 41.59	0	5015231..5016502	+	423	17231660	-	alr4168	-	hypothetical protein
4164	 45.97	0	5017060..5017518	+	152	17231661	-	alr4169	-	hypothetical protein
4165	 47.11	+1	5017515..5018015	+	166	17231662	-	alr4170	-	hypothetical protein
4166	 46.44	+1	5018096..5019049	+	317	17231663	-	alr4171	-	hypothetical protein
4167	 43.15	0	5019276..5020721	+	481	17231664	-	alr4172	-	hypothetical protein
4168	 34.02	-1	5020877..5022034	+	385	17231665	dmnC	alr4173	-	cytosine-specific DNA methyltransferase
4169	 44.35	0	5022225..5022905	+	226	17231666	-	alr4174	-	deoxyribose-phosphate aldolase
4170	 42.65	0	5023005..5023895	+	296	17231667	recO	alr4175	-	DNA repair protein RecO
4171	 43.10	0	5023879..5025516	+	545	17231668	-	alr4176	-	hypothetical protein
4172	 38.89	0	5025817..5025978	-	53	17231669	-	asl4177	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.