IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4026	 36.85	-1	4856203..4857483	+	426	17231523	-	alr4031	-	periplasmic-binding protein of ABC transporter
4027	 36.55	-1	4857483..4858571	+	362	17231524	-	alr4032	-	permease protein of iron(III) ABC transporter
4028	 40.82	0	4858580..4859581	+	333	17231525	-	alr4033	-	ATP-binding protein of ferrichrome ABC transporter
4029	 42.92	0	4859718..4859936	-	72	17231526	-	asl4034	-	hypothetical protein
4030	 45.44	0	4860196..4863714	-	1172	17231527	-	all4035	-	hypothetical protein
4031	 47.69	+1	4864109..4864693	+	194	17231528	-	alr4036	-	hypothetical protein
4032	 46.33	+1	4864809..4865570	-	253	17231529	-	all4037	-	serine acetyltransferase
4033	 44.99	0	4865708..4866196	-	162	17231530	-	all4038	-	hypothetical protein
4034	 28.14	-2	4866193..4866423	-	76	17231531	-	asl4039	-	hypothetical protein
4035	 34.48	-1	4866472..4867515	-	347	17231532	-	all4040	-	hypothetical protein
4036	 31.82	-2	4867550..4868143	-	197	17231533	-	all4041	-	hypothetical protein
4037	 41.00	0	4868576..4870231	-	551	17231534	-	all4042	-	hypothetical protein
4038	 42.22	0	4870392..4870751	+	119	17231535	-	alr4043	-	hypothetical protein
4039	 46.36	+1	4871168..4872265	+	365	17231536	hrcA	alr4044	-	heat-inducible transcription repressor
4040	 43.61	0	4872279..4872959	+	226	17231537	-	alr4045	-	hypothetical protein
4041	 43.15	0	4872971..4873978	+	335	17231538	-	alr4046	-	hypothetical protein
4042	 37.23	-1	4874051..4874281	-	76	17231539	-	asl4047	-	hypothetical protein
4043	 41.67	0	4874555..4874758	+	67	17231540	-	asr4048	-	hypothetical protein
4044	 41.21	0	4874846..4875391	-	181	17231541	-	all4049	-	hypothetical protein
4045	 42.87	0	4875530..4876504	-	324	17231542	-	all4050	-	hypothetical protein
4046	 39.72	0	4876816..4877661	-	281	17231543	-	all4051	-	hypothetical protein
4047	 47.27	+1	4877766..4879667	-	633	17231544	-	all4052	-	transketolase
4048	 41.78	0	4880260..4880472	-	70	17231545	-	asl4053	-	hypothetical protein
4049	 43.76	0	4880647..4881519	+	290	161353739	-	alr4054	-	5'-methylthioadenosine phosphorylase
4050	 44.21	0	4881652..4882635	-	327	17231547	-	all4055	-	glycine cleavage T-protein; aminomethyltransferase
4051	 41.07	0	4882768..4883103	+	111	17231548	-	alr4056	-	hypothetical protein
4052	 47.93	+1	4883744..4885552	+	602	17231549	-	alr4057	-	hypothetical protein
4053	 49.47	+1	4885563..4887371	+	602	17231550	-	alr4058	-	hypothetical protein
4054	 45.41	0	4887340..4887720	+	126	17231551	-	alr4059	-	hypothetical protein
4055	 43.10	0	4887881..4889314	+	477	17231552	-	alr4060	-	hypothetical protein
4056	 46.60	+1	4889323..4890264	+	313	17231553	-	alr4061	-	hypothetical protein
4057	 45.32	0	4890534..4892168	+	544	17231554	-	alr4062	-	hypothetical protein
4058	 41.62	0	4892355..4892873	-	172	17231555	-	all4063	-	phosphatidylglycerophosphate synthase
4059	 45.53	0	4893009..4894172	+	387	17231556	-	alr4064	-	hypothetical protein
4060	 43.17	0	4894391..4894756	+	121	17231557	ftrC	alr4065	-	ferredoxin--thioredoxin reductase catalytic chain
4061	 44.27	0	4894753..4895145	+	130	17231558	-	alr4066	-	hypothetical protein
4062	 45.58	0	4895449..4895946	+	165	17231559	-	alr4067	-	hypothetical protein
4063	 43.90	0	4895975..4896703	+	242	17231560	-	alr4068	-	ATP-binding protein of ABC transporter
4064	 43.19	0	4896809..4897924	+	371	17231561	-	alr4069	-	hypothetical protein
4065	 42.90	0	4898221..4898931	-	236	17231562	-	all4070	-	hypothetical protein
4066	 43.89	0	4899267..4900952	-	561	17231563	lysS	all4071	-	lysyl-tRNA synthetase
4067	 42.85	0	4901476..4902957	+	493	17231564	-	alr4072	-	hypothetical protein
4068	 42.35	0	4903279..4903644	-	121	17231565	-	all4073	-	hypothetical protein
4069	 43.72	0	4903942..4904904	-	320	17231566	-	all4074	-	hypothetical protein
4070	 46.44	+1	4905053..4906609	+	518	17231567	-	alr4075	-	hypothetical protein
4071	 47.22	+1	4906726..4906941	+	71	17231568	-	asr4076	-	hypothetical protein
4072	 44.64	0	4907883..4908227	+	114	17231569	-	alr4077	-	hypothetical protein
4073	 39.45	0	4908488..4910614	-	708	17231570	-	all4078	-	hypothetical protein
4074	 44.71	0	4910728..4911228	+	166	17231571	-	alr4079	-	hypothetical protein
4075	 43.39	0	4911332..4912981	-	549	17231572	-	all4080	-	ribosomal large chain pseudouridine synthase A
4076	 41.30	0	4913135..4914427	-	430	17231573	-	all4081	-	hypothetical protein
4077	 43.92	0	4920599..4921231	+	210	17231574	-	alr4082	-	transposase
4078	 44.00	0	4921313..4923271	-	652	17231575	-	all4083	-	hypothetical protein
4079	 43.64	0	4923324..4923905	-	193	17231576	-	all4084	-	hypothetical protein
4080	 41.29	0	4924034..4924699	-	221	17231577	-	all4085	-	endonuclease V
4081	 38.01	0	4924859..4925350	+	163	17231578	-	alr4086	-	hypothetical protein
4082	 43.90	0	4925465..4925833	-	122	17231579	-	all4087	-	protein kinase C inhibitor
4083	 46.14	+1	4925883..4927412	+	509	17231580	comM	alr4088	-	competence protein
4084	 39.12	0	4927444..4928220	-	258	17231581	-	all4089	-	hypothetical protein
4085	 40.36	0	4928362..4929486	-	374	17231582	-	all4090	-	hypothetical protein
4086	 31.64	-2	4929551..4929727	-	58	17231583	-	asl4091	-	hypothetical protein
4087	 35.73	-1	4929939..4930982	-	347	17231584	-	all4092	-	hypothetical protein
4088	 40.24	0	4931477..4931722	+	81	17231585	-	asr4093	-	hypothetical protein
4089	 43.41	0	4932447..4933676	+	409	17231586	-	alr4094	-	NADH dehydrogenase
4090	 42.09	0	4933759..4934409	+	216	17231587	-	alr4095	-	hypothetical protein
4091	 40.62	0	4934422..4935492	-	356	17231588	-	all4096	-	two-component hybrid sensor and regulator
4092	 42.41	0	4935546..4938443	-	965	17231589	-	all4097	-	two-component hybrid sensor and regulator
4093	 45.64	0	4938915..4939109	-	64	17231590	-	asl4098	-	hypothetical protein
4094	 39.15	0	4939577..4940470	+	297	17231591	-	alr4099	-	transcriptional regulator
4095	 44.17	0	4940632..4941369	+	245	17231592	-	alr4100	-	hypothetical protein
4096	 40.62	0	4941471..4941854	-	127	17231593	-	all4101	-	hypothetical protein
4097	 40.99	0	4942035..4943210	-	391	17231594	-	all4102	-	hypothetical protein
4098	 43.71	0	4943340..4944023	-	227	17231595	ribG	all4103	-	riboflavin-specific deaminase
4099	 46.48	+1	4944752..4945960	+	402	17231596	-	alr4104	-	transposase
4100	 37.51	-1	4946264..4947916	+	550	17231597	-	alr4105	-	two-component sensor histidine kinase
4101	 45.38	0	4947976..4949046	-	356	17231598	-	all4106	-	hypothetical protein
4102	 47.78	+1	4949468..4950076	-	202	17231599	-	all4107	-	ribonuclease III
4103	 42.22	0	4950121..4950300	+	59	17231600	-	asr4108	-	hypothetical protein
4104	 37.99	0	4950856..4951563	-	235	17231601	-	all4109	-	hypothetical protein
4105	 42.87	0	4951626..4952768	-	380	17231602	-	all4110	-	hypothetical protein
4106	 44.96	0	4952980..4955130	+	716	17231603	glyS	alr4111	-	glycyl-tRNA synthetase subunit beta
4107	 47.59	+1	4955215..4956603	+	462	17231604	murD	alr4112	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
4108	 47.69	+1	4956600..4957184	-	194	17231605	-	all4113	-	hypothetical protein
4109	 42.19	0	4957398..4957871	+	157	17231606	-	alr4114	-	hypothetical protein
4110	 42.62	0	4958087..4958560	+	157	17231607	-	alr4115	-	hypothetical protein
4111	 44.68	0	4958569..4959273	-	234	17231608	-	all4116	-	hypothetical protein
4112	 41.26	0	4959447..4960682	-	411	17231609	-	all4117	-	hypothetical protein
4113	 40.56	0	4960898..4961437	-	179	17231610	-	all4118	-	hypothetical protein
4114	 40.41	0	4962145..4962582	+	145	17231611	-	alr4119	-	hypothetical protein
4115	 46.51	+1	4962715..4964004	-	429	17231612	thrA	all4120	-	homoserine dehydrogenase
4116	 44.29	0	4964228..4965550	-	440	17231613	petH	all4121	-	ferredoxin--NADP(+) reductase
4117	 39.51	0	4966538..4966699	-	53	17231614	-	asl4122	-	hypothetical protein
4118	 43.78	0	4966719..4967723	+	334	17231615	prk	alr4123	-	phosphoribulokinase
4119	 46.79	+1	4967988..4969250	+	420	161353738	-	alr4124	-	S-adenosylmethionine synthetase
4120	 43.67	0	4969302..4970849	-	515	17231617	-	all4125	-	hypothetical protein
4121	 43.78	0	4971074..4972318	-	414	17231618	-	all4126	-	dolichol-phosphate mannosyltransferase
4122	 39.76	0	4972867..4974561	-	564	17231619	-	all4127	-	hypothetical protein
4123	 34.72	-1	4975087..4976673	-	528	17231620	-	all4128	-	hypothetical protein
4124	 45.32	0	4976929..4978104	+	391	17231621	-	alr4129	-	FO synthase subunit 2
4125	 41.17	0	4978161..4979066	-	301	17231622	-	all4130	-	binding protein of ABC transporter component
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.