IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3985	 29.03	-2	4810007..4810378	+	123	17231482	-	alr3990	-	hypothetical protein
3986	 47.47	+1	4810745..4811140	-	131	17231483	-	all3991	-	hypothetical protein
3987	 43.39	0	4811378..4811566	+	62	17231484	-	asr3992	-	photosystem II reaction center protein Z
3988	 45.03	0	4811761..4812333	+	190	17231485	ribH	alr3993	-	riboflavin synthase subunit beta
3989	 45.10	0	4813016..4813423	+	135	17231486	-	alr3994	-	hypothetical protein
3990	 44.94	0	4813428..4814693	+	421	17231487	-	alr3995	-	gamma-glutamyl phosphate reductase
3991	 35.16	-1	4814841..4815386	+	181	17231488	-	alr3996	-	hypothetical protein
3992	 42.45	0	4815490..4816980	+	496	17231489	-	alr3997	-	serine/threonine kinase
3993	 33.73	-2	4816981..4817229	-	82	17231490	-	asl3998	-	hypothetical protein
3994	 35.67	-1	4817307..4817606	-	99	17231491	-	all3999	-	hypothetical protein
3995	 40.19	0	4817699..4818661	-	320	17231492	-	all4000	-	hypothetical protein
3996	 44.15	0	4819084..4820118	-	344	17231493	isiA	all4001	-	photosystem II chlorophyll a-binding protein
3997	 44.51	0	4820689..4822119	-	476	17231494	-	all4002	-	hypothetical protein
3998	 46.06	0	4822122..4823150	-	342	17231495	-	all4003	-	hypothetical protein
3999	 37.75	-1	4823270..4823518	+	82	17231496	-	asr4004	-	hypothetical protein
4000	 44.23	0	4823654..4824910	+	418	17231497	-	alr4005	-	hypothetical protein
4001	 45.05	0	4824935..4825318	-	127	17231498	-	all4006	-	hypothetical protein
4002	 45.56	0	4825975..4826571	+	198	17231499	-	alr4007	-	hypothetical protein
4003	 47.97	+1	4827144..4828913	-	589	17231500	-	all4008	-	pyruvate kinase
4004	 41.07	0	4829483..4830322	+	279	17231501	-	alr4009	-	hypothetical protein
4005	 38.92	0	4830340..4830930	+	196	17231502	-	alr4010	-	hypothetical protein
4006	 40.86	0	4831007..4831777	+	256	17231503	-	alr4011	-	hypothetical protein
4007	 49.28	+1	4831816..4832229	-	137	17231504	-	all4012	-	chorismate mutase
4008	 42.46	0	4832348..4833169	-	273	17231505	-	all4013	-	protease IV
4009	 41.08	0	4833860..4834156	-	98	17231506	-	asl4014	-	hypothetical protein
4010	 44.19	0	4834564..4835355	+	263	17231507	-	alr4015	-	hypothetical protein
4011	 41.86	0	4835491..4835877	+	128	17231508	-	alr4016	-	hypothetical protein
4012	 45.03	0	4836030..4837286	+	418	17231509	-	alr4017	-	hypothetical protein
4013	 47.03	+1	4837529..4838908	-	459	17231510	opcA	all4018	-	hypothetical protein
4014	 48.76	+1	4839046..4840575	-	509	17231511	zwf	all4019	-	glucose-6-phosphate 1-dehydrogenase
4015	 42.58	0	4840718..4841863	-	381	17231512	tal	all4020	-	transaldolase
4016	 44.00	0	4842083..4843132	-	349	17231513	fbp	all4021	-	fructose-1,6-bisphosphatase
4017	 44.91	0	4843778..4844062	-	94	17231514	rbpD	asl4022	-	RNA-binding protein
4018	 43.23	0	4844455..4845495	-	346	17231515	-	all4023	-	cytochrome D ubiquinol oxidase chain II
4019	 47.12	+1	4845556..4846998	-	480	17231516	-	all4024	-	cytochrome D ubiquinol oxidase chain I
4020	 36.02	-1	4847178..4848368	-	396	17231517	-	all4025	-	hypothetical protein
4021	 43.39	0	4848435..4850999	-	854	17231518	-	all4026	-	hypothetical protein
4022	 42.58	0	4852466..4852876	+	136	17231519	-	alr4027	-	hypothetical protein
4023	 40.62	0	4853111..4853974	+	287	17231520	-	alr4028	-	hypothetical protein
4024	 37.84	-1	4854464..4855240	+	258	17231521	-	alr4029	-	hypothetical protein
4025	 38.95	0	4855283..4856155	+	290	17231522	-	alr4030	-	hypothetical protein
4026	 36.85	-1	4856203..4857483	+	426	17231523	-	alr4031	-	periplasmic-binding protein of ABC transporter
4027	 36.55	-1	4857483..4858571	+	362	17231524	-	alr4032	-	permease protein of iron(III) ABC transporter
4028	 40.82	0	4858580..4859581	+	333	17231525	-	alr4033	-	ATP-binding protein of ferrichrome ABC transporter
4029	 42.92	0	4859718..4859936	-	72	17231526	-	asl4034	-	hypothetical protein
4030	 45.44	0	4860196..4863714	-	1172	17231527	-	all4035	-	hypothetical protein
4031	 47.69	+1	4864109..4864693	+	194	17231528	-	alr4036	-	hypothetical protein
4032	 46.33	+1	4864809..4865570	-	253	17231529	-	all4037	-	serine acetyltransferase
4033	 44.99	0	4865708..4866196	-	162	17231530	-	all4038	-	hypothetical protein
4034	 28.14	-2	4866193..4866423	-	76	17231531	-	asl4039	-	hypothetical protein
4035	 34.48	-1	4866472..4867515	-	347	17231532	-	all4040	-	hypothetical protein
4036	 31.82	-2	4867550..4868143	-	197	17231533	-	all4041	-	hypothetical protein
4037	 41.00	0	4868576..4870231	-	551	17231534	-	all4042	-	hypothetical protein
4038	 42.22	0	4870392..4870751	+	119	17231535	-	alr4043	-	hypothetical protein
4039	 46.36	+1	4871168..4872265	+	365	17231536	hrcA	alr4044	-	heat-inducible transcription repressor
4040	 43.61	0	4872279..4872959	+	226	17231537	-	alr4045	-	hypothetical protein
4041	 43.15	0	4872971..4873978	+	335	17231538	-	alr4046	-	hypothetical protein
4042	 37.23	-1	4874051..4874281	-	76	17231539	-	asl4047	-	hypothetical protein
4043	 41.67	0	4874555..4874758	+	67	17231540	-	asr4048	-	hypothetical protein
4044	 41.21	0	4874846..4875391	-	181	17231541	-	all4049	-	hypothetical protein
4045	 42.87	0	4875530..4876504	-	324	17231542	-	all4050	-	hypothetical protein
4046	 39.72	0	4876816..4877661	-	281	17231543	-	all4051	-	hypothetical protein
4047	 47.27	+1	4877766..4879667	-	633	17231544	-	all4052	-	transketolase
4048	 41.78	0	4880260..4880472	-	70	17231545	-	asl4053	-	hypothetical protein
4049	 43.76	0	4880647..4881519	+	290	161353739	-	alr4054	-	5'-methylthioadenosine phosphorylase
4050	 44.21	0	4881652..4882635	-	327	17231547	-	all4055	-	glycine cleavage T-protein; aminomethyltransferase
4051	 41.07	0	4882768..4883103	+	111	17231548	-	alr4056	-	hypothetical protein
4052	 47.93	+1	4883744..4885552	+	602	17231549	-	alr4057	-	hypothetical protein
4053	 49.47	+1	4885563..4887371	+	602	17231550	-	alr4058	-	hypothetical protein
4054	 45.41	0	4887340..4887720	+	126	17231551	-	alr4059	-	hypothetical protein
4055	 43.10	0	4887881..4889314	+	477	17231552	-	alr4060	-	hypothetical protein
4056	 46.60	+1	4889323..4890264	+	313	17231553	-	alr4061	-	hypothetical protein
4057	 45.32	0	4890534..4892168	+	544	17231554	-	alr4062	-	hypothetical protein
4058	 41.62	0	4892355..4892873	-	172	17231555	-	all4063	-	phosphatidylglycerophosphate synthase
4059	 45.53	0	4893009..4894172	+	387	17231556	-	alr4064	-	hypothetical protein
4060	 43.17	0	4894391..4894756	+	121	17231557	ftrC	alr4065	-	ferredoxin--thioredoxin reductase catalytic chain
4061	 44.27	0	4894753..4895145	+	130	17231558	-	alr4066	-	hypothetical protein
4062	 45.58	0	4895449..4895946	+	165	17231559	-	alr4067	-	hypothetical protein
4063	 43.90	0	4895975..4896703	+	242	17231560	-	alr4068	-	ATP-binding protein of ABC transporter
4064	 43.19	0	4896809..4897924	+	371	17231561	-	alr4069	-	hypothetical protein
4065	 42.90	0	4898221..4898931	-	236	17231562	-	all4070	-	hypothetical protein
4066	 43.89	0	4899267..4900952	-	561	17231563	lysS	all4071	-	lysyl-tRNA synthetase
4067	 42.85	0	4901476..4902957	+	493	17231564	-	alr4072	-	hypothetical protein
4068	 42.35	0	4903279..4903644	-	121	17231565	-	all4073	-	hypothetical protein
4069	 43.72	0	4903942..4904904	-	320	17231566	-	all4074	-	hypothetical protein
4070	 46.44	+1	4905053..4906609	+	518	17231567	-	alr4075	-	hypothetical protein
4071	 47.22	+1	4906726..4906941	+	71	17231568	-	asr4076	-	hypothetical protein
4072	 44.64	0	4907883..4908227	+	114	17231569	-	alr4077	-	hypothetical protein
4073	 39.45	0	4908488..4910614	-	708	17231570	-	all4078	-	hypothetical protein
4074	 44.71	0	4910728..4911228	+	166	17231571	-	alr4079	-	hypothetical protein
4075	 43.39	0	4911332..4912981	-	549	17231572	-	all4080	-	ribosomal large chain pseudouridine synthase A
4076	 41.30	0	4913135..4914427	-	430	17231573	-	all4081	-	hypothetical protein
4077	 43.92	0	4920599..4921231	+	210	17231574	-	alr4082	-	transposase
4078	 44.00	0	4921313..4923271	-	652	17231575	-	all4083	-	hypothetical protein
4079	 43.64	0	4923324..4923905	-	193	17231576	-	all4084	-	hypothetical protein
4080	 41.29	0	4924034..4924699	-	221	17231577	-	all4085	-	endonuclease V
4081	 38.01	0	4924859..4925350	+	163	17231578	-	alr4086	-	hypothetical protein
4082	 43.90	0	4925465..4925833	-	122	17231579	-	all4087	-	protein kinase C inhibitor
4083	 46.14	+1	4925883..4927412	+	509	17231580	comM	alr4088	-	competence protein
4084	 39.12	0	4927444..4928220	-	258	17231581	-	all4089	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.