IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3607	 38.71	0	4362509..4362694	+	61	17231104	-	asr3612	-	hypothetical protein
3608	 39.75	0	4363025..4364971	-	648	17231105	-	all3613	-	hypothetical protein
3609	 40.83	0	4364973..4365479	+	168	17231106	-	alr3614	-	hypothetical protein
3610	 40.14	0	4365534..4367399	-	621	17231107	-	all3615	-	hypothetical protein
3611	 45.08	0	4367527..4367841	-	104	17231108	-	all3616	-	hypothetical protein
3612	 40.88	0	4368001..4368318	-	105	17231109	-	all3617	-	hypothetical protein
3613	 41.66	0	4368583..4370913	+	776	17231110	-	alr3618	-	type I restriction-modification enzyme R subunit
3614	 33.84	-1	4370939..4371931	+	330	17231111	-	alr3619	-	hypothetical protein
3615	 40.34	0	4371939..4373393	+	484	17231112	-	alr3620	-	type I restriction modification enzyme M subunit
3616	 36.44	-1	4373436..4373660	+	74	17231113	-	asr3621	-	hypothetical protein
3617	 32.86	-2	4373644..4374066	+	140	17231114	-	alr3622	-	hypothetical protein
3618	 33.11	-2	4374063..4374503	+	146	17231115	-	alr3623	-	hypothetical protein
3619	 40.83	0	4374490..4375383	-	297	17231116	-	all3624	-	transposase
3620	 40.21	0	4375688..4376749	+	353	17231117	-	alr3625	-	hypothetical protein
3621	 35.48	-1	4376790..4377161	-	123	17231118	-	all3626	-	hypothetical protein
3622	 40.91	0	4377421..4378410	+	329	17231119	-	alr3627	-	hypothetical protein
3623	 43.98	0	4378414..4378920	-	168	17231120	-	all3628	-	hypothetical protein
3624	 42.36	0	4378917..4379747	-	276	17231121	-	all3629	-	hypothetical protein
3625	 44.24	0	4379751..4381364	-	537	17231122	-	all3630	-	transposase
3626	 38.29	0	4381849..4382796	-	315	17231123	avaIR	all3631	-	type II site-specific deoxyribonuclease
3627	 33.61	-2	4382796..4384244	-	482	17231124	avaIM	all3632	-	site-specific DNA-methyltransferase (cytosine-specific)
3628	 42.36	0	4384454..4385494	-	346	17231125	-	all3633	-	glucanase
3629	 40.51	0	4385664..4386722	-	352	17231126	-	all3634	-	hypothetical protein
3630	 45.47	0	4387089..4388291	-	400	17231127	-	all3635	-	hypothetical protein
3631	 40.08	0	4388850..4389812	+	320	17231128	-	alr3636	-	transposase
3632	 54.41	+2	4389902..4390105	-	67	17231129	-	asl3637	-	hypothetical protein
3633	 45.21	0	4390136..4391305	+	389	17231130	-	alr3638	-	DNA mismatch repair protein
3634	 31.65	-2	4391426..4392199	+	257	17231131	-	alr3639	-	hypothetical protein
3635	 33.70	-2	4392196..4392735	+	179	17231132	-	alr3640	-	hypothetical protein
3636	 35.63	-1	4392739..4393260	+	173	17231133	-	alr3641	-	hypothetical protein
3637	 46.95	+1	4393464..4395350	-	628	17231134	ftsH	all3642	-	cell division protein
3638	 44.84	0	4395685..4396188	-	167	17231135	-	all3643	-	hypothetical protein
3639	 47.83	+1	4396589..4398409	+	606	17231136	-	alr3644	-	aspartate kinase
3640	 38.26	0	4398743..4399087	+	114	17231137	-	alr3645	-	hypothetical protein
3641	 34.83	-1	4399520..4400122	+	200	17231138	-	alr3646	-	transcriptional regulator
3642	 46.74	+1	4400164..4401468	+	434	17231139	-	alr3647	-	hypothetical protein
3643	 42.07	0	4401511..4402677	+	388	17231140	-	alr3648	-	hypothetical protein
3644	 40.40	0	4402761..4403510	+	249	17231141	-	alr3649	-	hypothetical protein
3645	 43.92	0	4403617..4404183	-	188	17231142	-	all3650	-	hypothetical protein
3646	 45.07	0	4404283..4405782	-	499	17231143	-	all3651	-	amidophosphoribosyltransferase
3647	 47.00	+1	4406022..4408370	-	782	17231144	-	all3652	-	phosphoribosylformylglycinamidine synthase II
3648	 45.47	0	4409048..4409533	-	161	17231145	apcD	all3653	-	allophycocyanin B alpha chain
3649	 44.54	0	4409748..4411130	+	460	17231146	-	alr3654	-	hypothetical protein
3650	 44.00	0	4411538..4411987	+	149	17231147	-	alr3655	-	hypothetical protein
3651	 46.80	+1	4412038..4412334	-	98	17231148	-	asl3656	-	hypothetical protein
3652	 44.19	0	4412665..4412793	+	42	17231149	-	asr3657	-	hypothetical protein
3653	 43.68	0	4412796..4414187	+	463	17231150	asnC	alr3658	-	asparaginyl-tRNA synthetase
3654	 42.37	0	4415145..4416914	+	589	17231151	-	alr3659	-	hypothetical protein
3655	 45.28	0	4417145..4417822	-	225	17231152	-	all3660	-	two-component response regulator
3656	 48.08	+1	4418762..4419073	+	103	17231153	groES	alr3661	-	co-chaperonin GroES
3657	 47.89	+1	4419169..4420803	+	544	17231154	groEL	alr3662	-	chaperonin GroEL
3658	 30.29	-2	4420908..4421957	+	349	17231155	-	alr3663	-	hypothetical protein
3659	 33.77	-2	4422209..4422436	-	75	17231156	-	asl3664	-	hypothetical protein
3660	 35.39	-1	4422494..4422736	-	80	17231157	-	asl3665	-	hypothetical protein
3661	 45.12	0	4422800..4423639	+	279	17231158	-	alr3666	-	urease accessory protein D
3662	 40.59	0	4423667..4423969	+	100	17231159	ureA	alr3667	-	urease subunit gamma
3663	 43.73	0	4423990..4424316	+	108	17231160	ureB	alr3668	-	urease subunit beta
3664	 40.20	0	4424334..4424726	-	130	17231161	-	all3669	-	hypothetical protein
3665	 46.87	+1	4424795..4426501	+	568	17231162	ureC	alr3670	-	urease subunit alpha
3666	 42.73	0	4426595..4427818	+	407	17231163	-	alr3671	-	two-component hybrid sensor and regulator
3667	 38.18	0	4427870..4429252	+	460	17231164	-	alr3672	-	aldehyde dehydrogenase
3668	 44.67	0	4429411..4430001	-	196	17231165	-	all3673	-	hypothetical protein
3669	 41.38	0	4430459..4430632	-	57	17231166	rpmF	asl3674	-	50S ribosomal protein L32
3670	 47.47	+1	4430832..4431404	-	190	17231167	-	all3675	-	hypothetical protein
3671	 45.08	0	4431602..4433551	+	649	17231168	-	alr3676	-	hypothetical protein
3672	 43.65	0	4433587..4433964	-	125	17231169	-	all3677	-	hypothetical protein
3673	 45.99	0	4434586..4436355	-	589	17231170	-	all3678	-	hypothetical protein
3674	 43.50	0	4436671..4437555	-	294	17231171	dapA	all3679	-	dihydrodipicolinate synthase
3675	 45.88	0	4437973..4439016	-	347	161353742	-	all3680	-	aspartate-semialdehyde dehydrogenase
3676	 44.42	0	4440005..4441420	+	471	17231173	tig	alr3681	-	trigger factor
3677	 40.08	0	4441723..4442685	-	320	17231174	-	all3682	-	transposase
3678	 44.64	0	4443275..4443973	+	232	17231175	clpP	alr3683	-	ATP-dependent Clp protease proteolytic subunit
3679	 46.41	+1	4443983..4445320	+	445	17231176	clpX	alr3684	-	ATP-dependent protease ATP-binding subunit
3680	 41.91	0	4445419..4446339	+	306	17231177	-	alr3685	-	hypothetical protein
3681	 42.74	0	4446444..4446677	+	77	17231178	-	asr3686	-	hypothetical protein
3682	 39.63	0	4447103..4447483	-	126	17231179	-	all3687	-	hypothetical protein
3683	 43.61	0	4448071..4449111	-	346	17231180	-	all3688	-	hypothetical protein
3684	 42.44	0	4449527..4450174	+	215	17231181	-	alr3689	-	hypothetical protein
3685	 41.93	0	4450405..4451625	+	406	17231182	-	alr3690	-	hypothetical protein
3686	 40.03	0	4451988..4458053	-	2021	17231183	-	all3691	-	serine/threonine kinase protein
3687	 43.27	0	4458604..4459458	+	284	17231184	-	alr3692	-	hypothetical protein
3688	 40.19	0	4459879..4460739	+	286	17231185	-	alr3693	-	hypothetical protein
3689	 42.86	0	4461464..4461631	+	55	17231186	-	asr3694	-	hypothetical protein
3690	 44.90	0	4461641..4462807	-	388	17231187	-	all3695	-	N-acyl-D-glucosamine 2-epimerase
3691	 42.19	0	4462934..4464073	-	379	17231188	-	all3696	-	hypothetical protein
3692	 34.17	-1	4464078..4464914	-	278	17231189	-	all3697	-	hypothetical protein
3693	 36.32	-1	4465828..4466997	+	389	17231190	hepB	alr3698	-	heterocyst envelope polysaccharide synthesis protein
3694	 42.12	0	4467059..4468207	+	382	17231191	-	alr3699	-	hypothetical protein
3695	 35.16	-1	4468308..4469018	+	236	17231192	-	alr3700	-	site-specific DNA-methyltransferase
3696	 41.26	0	4469152..4470792	+	546	17231193	-	alr3701	-	type II site-specific deoxyribonuclease
3697	 47.16	+1	4470847..4471656	-	269	17231194	-	all3702	-	hypothetical protein
3698	 43.58	0	4471875..4472684	+	269	17231195	-	alr3703	-	hypothetical protein
3699	 40.85	0	4472761..4473279	-	172	17231196	-	all3704	-	hypothetical protein
3700	 41.19	0	4473345..4474808	+	487	17231197	-	alr3705	-	hypothetical protein
3701	 43.14	0	4475153..4476793	+	546	17231198	-	alr3706	-	serine/threonine kinase
3702	 46.07	0	4477202..4477939	+	245	17231199	-	alr3707	-	phycocyanobilin:ferredoxin oxidoreductase
3703	 42.33	0	4478014..4478202	+	62	17231200	-	asr3708	-	hypothetical protein
3704	 26.77	-2	4478641..4478838	-	65	17231201	-	asl3709	-	hypothetical protein
3705	 46.25	+1	4478870..4480294	+	474	17231202	devB	alr3710	-	heterocyst specific ABC-transporter, membrane fusion protein
3706	 37.31	-1	4480335..4481492	+	385	17231203	devC	alr3711	-	heterocyst specific ABC-transporter, membrane spanning subunit
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.