IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3563	 42.78	0	4310641..4311540	-	299	17231060	-	all3568	-	hypothetical protein
3564	 43.49	0	4311552..4311935	-	127	17231061	-	all3569	-	aspartate alpha-decarboxylase
3565	 41.37	0	4312098..4312607	-	169	17231062	ppa	all3570	-	inorganic pyrophosphatase
3566	 40.08	0	4314100..4315062	+	320	17231063	-	alr3571	-	transposase
3567	 48.85	+1	4315437..4316519	-	360	17231064	psbAIV	all3572	-	photosystem II protein D1
3568	 44.02	0	4316746..4317765	+	339	17231065	cofG	alr3573	-	FO synthase subunit 1
3569	 41.61	0	4317756..4318601	-	281	17231066	-	all3574	-	permease protein of ABC transporter
3570	 45.36	0	4318673..4319470	-	265	17231067	-	all3575	-	ATP-binding protein of ABC transporter
3571	 41.41	0	4319563..4320540	+	325	17231068	-	alr3576	-	adhesin precursor
3572	 38.75	0	4320900..4321250	+	116	17231069	-	alr3577	-	hypothetical protein
3573	 38.95	0	4321425..4324058	-	877	17231070	-	all3578	-	DNA polymerase III subunit alpha
3574	 33.33	-2	4324243..4324710	-	155	17231071	-	all3579	-	hypothetical protein
3575	 44.93	0	4324782..4325945	-	387	17231072	-	all3580	-	hypothetical protein
3576	 43.41	0	4326071..4327300	-	409	17231073	-	all3581	-	hypothetical protein
3577	 44.95	0	4327699..4328292	-	197	17231074	-	all3582	-	hypothetical protein
3578	 43.61	0	4328478..4329119	+	213	17231075	-	alr3583	-	hypothetical protein
3579	 42.74	0	4329217..4330290	+	357	17231076	-	alr3584	-	hypothetical protein
3580	 45.40	0	4330312..4331148	-	278	17231077	-	all3585	-	hypothetical protein
3581	 40.00	0	4331466..4331945	-	159	17231078	-	all3586	-	hypothetical protein
3582	 42.37	0	4332137..4333564	-	475	17231079	-	all3587	-	two-component sensor histidine kinase
3583	 40.70	0	4334541..4337267	+	908	17231080	-	alr3588	-	hypothetical protein
3584	 44.22	0	4337442..4338047	+	201	17231081	-	alr3589	-	hypothetical protein
3585	 40.43	0	4338377..4338940	+	187	17231082	-	alr3590	-	hypothetical protein
3586	 39.48	0	4338991..4339950	+	319	17231083	-	alr3591	-	hypothetical protein
3587	 38.07	0	4340050..4343151	+	1033	17231084	-	alr3592	-	hypothetical protein
3588	 41.11	0	4343264..4345474	+	736	17231085	-	alr3593	-	polyphosphate kinase
3589	 40.29	0	4345627..4346043	+	138	17231086	-	alr3594	-	two-component response regulator
3590	 36.61	-1	4346164..4346346	-	60	17231087	-	asl3595	-	hypothetical protein
3591	 40.41	0	4346515..4347093	+	192	17231088	-	alr3596	-	hypothetical protein
3592	 39.85	0	4347106..4347366	-	86	17231089	-	asl3597	-	hypothetical protein
3593	 35.26	-1	4347990..4348145	+	51	17231090	-	asr3598	-	hypothetical protein
3594	 41.16	0	4348228..4349262	+	344	17231091	-	alr3599	-	two-component response regulator
3595	 44.86	0	4349314..4350519	-	401	17231092	-	all3600	-	adaptive-response sensory kinase
3596	 42.69	0	4350644..4352140	+	498	17231093	-	alr3601	-	hypothetical protein
3597	 42.40	0	4352736..4354787	+	683	17231094	-	alr3602	-	hypothetical protein
3598	 41.28	0	4354830..4355282	+	150	17231095	-	alr3603	-	hypothetical protein
3599	 38.41	0	4355339..4355890	-	183	17231096	-	all3604	-	hypothetical protein
3600	 37.74	-1	4356055..4356213	+	52	17231097	-	asr3605	-	hypothetical protein
3601	 48.18	+1	4356210..4357502	+	430	17231098	-	alr3606	-	branched-chain alpha-keto acid dehydrogenase subunit E2
3602	 39.91	0	4357616..4358314	+	232	17231099	-	alr3607	-	hypothetical protein
3603	 44.18	0	4358563..4360221	+	552	17231100	-	alr3608	-	hypothetical protein
3604	 45.69	0	4360602..4360868	-	88	17231101	-	asl3609	-	hypothetical protein
3605	 45.31	0	4361124..4361507	+	127	17231102	-	alr3610	-	transposase
3606	 43.54	0	4361477..4361917	+	146	17231103	-	alr3611	-	transposase
3607	 38.71	0	4362509..4362694	+	61	17231104	-	asr3612	-	hypothetical protein
3608	 39.75	0	4363025..4364971	-	648	17231105	-	all3613	-	hypothetical protein
3609	 40.83	0	4364973..4365479	+	168	17231106	-	alr3614	-	hypothetical protein
3610	 40.14	0	4365534..4367399	-	621	17231107	-	all3615	-	hypothetical protein
3611	 45.08	0	4367527..4367841	-	104	17231108	-	all3616	-	hypothetical protein
3612	 40.88	0	4368001..4368318	-	105	17231109	-	all3617	-	hypothetical protein
3613	 41.66	0	4368583..4370913	+	776	17231110	-	alr3618	-	type I restriction-modification enzyme R subunit
3614	 33.84	-1	4370939..4371931	+	330	17231111	-	alr3619	-	hypothetical protein
3615	 40.34	0	4371939..4373393	+	484	17231112	-	alr3620	-	type I restriction modification enzyme M subunit
3616	 36.44	-1	4373436..4373660	+	74	17231113	-	asr3621	-	hypothetical protein
3617	 32.86	-2	4373644..4374066	+	140	17231114	-	alr3622	-	hypothetical protein
3618	 33.11	-2	4374063..4374503	+	146	17231115	-	alr3623	-	hypothetical protein
3619	 40.83	0	4374490..4375383	-	297	17231116	-	all3624	-	transposase
3620	 40.21	0	4375688..4376749	+	353	17231117	-	alr3625	-	hypothetical protein
3621	 35.48	-1	4376790..4377161	-	123	17231118	-	all3626	-	hypothetical protein
3622	 40.91	0	4377421..4378410	+	329	17231119	-	alr3627	-	hypothetical protein
3623	 43.98	0	4378414..4378920	-	168	17231120	-	all3628	-	hypothetical protein
3624	 42.36	0	4378917..4379747	-	276	17231121	-	all3629	-	hypothetical protein
3625	 44.24	0	4379751..4381364	-	537	17231122	-	all3630	-	transposase
3626	 38.29	0	4381849..4382796	-	315	17231123	avaIR	all3631	-	type II site-specific deoxyribonuclease
3627	 33.61	-2	4382796..4384244	-	482	17231124	avaIM	all3632	-	site-specific DNA-methyltransferase (cytosine-specific)
3628	 42.36	0	4384454..4385494	-	346	17231125	-	all3633	-	glucanase
3629	 40.51	0	4385664..4386722	-	352	17231126	-	all3634	-	hypothetical protein
3630	 45.47	0	4387089..4388291	-	400	17231127	-	all3635	-	hypothetical protein
3631	 40.08	0	4388850..4389812	+	320	17231128	-	alr3636	-	transposase
3632	 54.41	+2	4389902..4390105	-	67	17231129	-	asl3637	-	hypothetical protein
3633	 45.21	0	4390136..4391305	+	389	17231130	-	alr3638	-	DNA mismatch repair protein
3634	 31.65	-2	4391426..4392199	+	257	17231131	-	alr3639	-	hypothetical protein
3635	 33.70	-2	4392196..4392735	+	179	17231132	-	alr3640	-	hypothetical protein
3636	 35.63	-1	4392739..4393260	+	173	17231133	-	alr3641	-	hypothetical protein
3637	 46.95	+1	4393464..4395350	-	628	17231134	ftsH	all3642	-	cell division protein
3638	 44.84	0	4395685..4396188	-	167	17231135	-	all3643	-	hypothetical protein
3639	 47.83	+1	4396589..4398409	+	606	17231136	-	alr3644	-	aspartate kinase
3640	 38.26	0	4398743..4399087	+	114	17231137	-	alr3645	-	hypothetical protein
3641	 34.83	-1	4399520..4400122	+	200	17231138	-	alr3646	-	transcriptional regulator
3642	 46.74	+1	4400164..4401468	+	434	17231139	-	alr3647	-	hypothetical protein
3643	 42.07	0	4401511..4402677	+	388	17231140	-	alr3648	-	hypothetical protein
3644	 40.40	0	4402761..4403510	+	249	17231141	-	alr3649	-	hypothetical protein
3645	 43.92	0	4403617..4404183	-	188	17231142	-	all3650	-	hypothetical protein
3646	 45.07	0	4404283..4405782	-	499	17231143	-	all3651	-	amidophosphoribosyltransferase
3647	 47.00	+1	4406022..4408370	-	782	17231144	-	all3652	-	phosphoribosylformylglycinamidine synthase II
3648	 45.47	0	4409048..4409533	-	161	17231145	apcD	all3653	-	allophycocyanin B alpha chain
3649	 44.54	0	4409748..4411130	+	460	17231146	-	alr3654	-	hypothetical protein
3650	 44.00	0	4411538..4411987	+	149	17231147	-	alr3655	-	hypothetical protein
3651	 46.80	+1	4412038..4412334	-	98	17231148	-	asl3656	-	hypothetical protein
3652	 44.19	0	4412665..4412793	+	42	17231149	-	asr3657	-	hypothetical protein
3653	 43.68	0	4412796..4414187	+	463	17231150	asnC	alr3658	-	asparaginyl-tRNA synthetase
3654	 42.37	0	4415145..4416914	+	589	17231151	-	alr3659	-	hypothetical protein
3655	 45.28	0	4417145..4417822	-	225	17231152	-	all3660	-	two-component response regulator
3656	 48.08	+1	4418762..4419073	+	103	17231153	groES	alr3661	-	co-chaperonin GroES
3657	 47.89	+1	4419169..4420803	+	544	17231154	groEL	alr3662	-	chaperonin GroEL
3658	 30.29	-2	4420908..4421957	+	349	17231155	-	alr3663	-	hypothetical protein
3659	 33.77	-2	4422209..4422436	-	75	17231156	-	asl3664	-	hypothetical protein
3660	 35.39	-1	4422494..4422736	-	80	17231157	-	asl3665	-	hypothetical protein
3661	 45.12	0	4422800..4423639	+	279	17231158	-	alr3666	-	urease accessory protein D
3662	 40.59	0	4423667..4423969	+	100	17231159	ureA	alr3667	-	urease subunit gamma
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.