IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3409	 42.45	0	4123215..4123598	+	127	17230906	-	alr3414	-	hypothetical protein
3410	 45.49	0	4123813..4124955	+	380	17230907	-	alr3415	-	putative inner membrane protein translocase component YidC
3411	 42.20	0	4124959..4125477	+	172	17230908	-	alr3416	-	hypothetical protein
3412	 44.31	0	4125639..4126148	+	169	17230909	-	alr3417	-	hypothetical protein
3413	 43.22	0	4126272..4127747	-	491	17230910	-	all3418	-	hypothetical protein
3414	 44.69	0	4128039..4128725	+	228	17230911	-	alr3419	-	hypothetical protein
3415	 45.45	0	4128765..4130018	-	417	17230912	-	all3420	-	carboxyl-terminal processing protease
3416	 47.22	+1	4130387..4131034	+	215	17230913	petB	alr3421	-	cytochrome b6
3417	 46.17	+1	4131205..4131687	+	160	17230914	petD	alr3422	-	cytochrome b6-f complex subunit IV
3418	 45.05	0	4132013..4132456	+	147	17230915	-	alr3423	-	hypothetical protein
3419	 42.39	0	4132791..4133795	+	334	17230916	-	alr3424	-	GDP-mannose 4,6-dehydratase
3420	 43.36	0	4133859..4135025	+	388	17230917	-	alr3425	-	hypothetical protein
3421	 41.13	0	4135102..4135473	+	123	17230918	-	alr3426	-	hypothetical protein
3422	 43.43	0	4135556..4135753	+	65	17230919	rpmI	asr3427	-	50S ribosomal protein L35
3423	 47.34	+1	4135780..4136136	+	118	17230920	rplT	alr3428	-	50S ribosomal protein L20
3424	 43.63	0	4136149..4136964	+	271	17230921	glnH	alr3429	-	glutamine-binding protein of glutamine ABC transporter
3425	 40.95	0	4137079..4137603	+	174	17230922	-	alr3430	-	hypothetical protein
3426	 42.56	0	4137723..4139705	+	660	17230923	tynA	alr3431	-	tyramine oxidase
3427	 45.17	0	4139777..4140553	-	258	17230924	-	all3432	-	undecaprenyl pyrophosphate synthetase
3428	 47.91	+1	4140578..4141510	-	310	17230925	-	all3433	-	hypothetical protein
3429	 34.00	-1	4141666..4142568	+	300	17230926	-	alr3434	-	hypothetical protein
3430	 41.85	0	4142583..4143263	-	226	17230927	-	all3435	-	hypothetical protein
3431	 33.94	-1	4143377..4143706	-	109	17230928	-	all3436	-	hypothetical protein
3432	 41.46	0	4143832..4146207	+	791	17230929	-	alr3437	-	hypothetical protein
3433	 46.38	+1	4146239..4146445	-	68	17230930	-	asl3438	-	hypothetical protein
3434	 43.92	0	4146450..4146827	-	125	17230931	-	all3439	-	hypothetical protein
3435	 37.62	-1	4146845..4147054	-	69	17230932	-	asl3440	-	hypothetical protein
3436	 46.17	+1	4147164..4148690	+	508	17230933	chlB	alr3441	-	light-independent protochlorophyllide reductase subunit B
3437	 41.88	0	4149012..4151609	+	865	17230934	-	alr3442	-	two-component hybrid sensor and regulator
3438	 43.59	0	4151646..4153790	+	714	17230935	-	alr3443	-	p-aminobenzoic acid synthase
3439	 43.03	0	4153860..4154849	+	329	17230936	-	alr3444	-	DNA polymerase III subunit delta
3440	 35.13	-1	4154866..4155423	+	185	17230937	-	alr3445	-	hypothetical protein
3441	 43.49	0	4155565..4155948	-	127	17230938	-	all3446	-	hypothetical protein
3442	 36.39	-1	4156090..4156677	-	195	17230939	-	all3447	-	hypothetical protein
3443	 39.81	0	4157106..4158062	+	318	17230940	ubiA	alr3448	-	tocopherol phytyltransferase
3444	 36.11	-1	4158067..4158534	+	155	17230941	-	alr3449	-	hypothetical protein
3445	 43.05	0	4158588..4160141	+	517	17230942	-	alr3450	-	uroporphyrinogen III methylase
3446	 38.48	0	4160341..4162437	+	698	17230943	-	alr3451	-	ATP-dependent DNA helicase
3447	 41.99	0	4162444..4163691	+	415	17230944	-	alr3452	-	hypothetical protein
3448	 41.27	0	4163726..4164418	+	230	17230945	-	alr3453	-	hypothetical protein
3449	 43.82	0	4164528..4165853	+	441	17230946	-	alr3454	-	hypothetical protein
3450	 46.09	0	4166141..4167034	+	297	161353743	minC	alr3455	-	septum formation inhibitor
3451	 48.08	+1	4167080..4167886	+	268	17230948	minD	alr3456	-	septum site-determining protein
3452	 42.86	0	4167919..4168212	+	97	17230949	minE	asr3457	-	septum site-determining protein
3453	 42.58	0	4168304..4168822	-	172	17230950	-	all3458	-	hypothetical protein
3454	 44.16	0	4168951..4170225	-	424	17230951	-	all3459	-	hypothetical protein
3455	 43.05	0	4171067..4172095	+	342	17230952	fmt	alr3460	-	methionyl-tRNA formyltransferase
3456	 48.24	+1	4172078..4172446	-	122	17230953	-	all3461	-	hypothetical protein
3457	 55.68	+2	4172791..4173573	-	260	17230954	-	all3462	-	hypothetical protein
3458	 51.63	+2	4173933..4174178	+	81	17230955	psaC	asr3463	-	photosystem I subunit VII
3459	 45.26	0	4174749..4176374	+	541	17230956	nodM	alr3464	-	D-fructose-6-phosphate amidotransferase
3460	 36.76	-1	4176532..4179891	-	1119	17230957	-	all3465	-	hypothetical protein
3461	 43.35	0	4180805..4185385	+	1526	17230958	-	alr3466	-	WD-40 repeat-containing protein
3462	 38.26	0	4185693..4185956	+	87	17230959	-	asr3467	-	hypothetical protein
3463	 48.02	+1	4186153..4186404	+	83	17230960	-	asr3468	-	hypothetical protein
3464	 35.40	-1	4186401..4186787	+	128	17230961	-	alr3469	-	hypothetical protein
3465	 39.78	0	4186856..4187041	-	61	17230962	-	asl3470	-	hypothetical protein
3466	 33.70	-2	4187146..4189311	+	721	17230963	-	alr3471	-	hypothetical protein
3467	 33.63	-2	4189385..4191058	+	557	17230964	-	alr3472	-	hypothetical protein
3468	 42.13	0	4191316..4193646	+	776	17230965	-	alr3473	-	type I restriction-modification enzyme R subunit
3469	 33.84	-1	4193672..4194664	+	330	17230966	-	alr3474	-	hypothetical protein
3470	 40.40	0	4194672..4196114	+	480	17230967	-	alr3475	-	type I restriction modification enzyme M subunit
3471	 29.67	-2	4196104..4196403	+	99	17230968	-	alr3476	-	type I restriction-modification enzyme S subunit
3472	 39.24	0	4196580..4197731	+	383	17230969	-	alr3477	-	type I restriction-modification enzyme S subunit
3473	 41.11	0	4197876..4198145	+	89	17230970	-	asr3478	-	hypothetical protein
3474	 41.78	0	4198145..4198594	+	149	17230971	-	alr3479	-	hypothetical protein
3475	 37.50	-1	4198806..4199021	-	71	17230972	-	asl3480	-	hypothetical protein
3476	 44.44	0	4199139..4199696	+	185	17230973	-	alr3481	-	hypothetical protein
3477	 47.75	+1	4199693..4200025	+	110	17230974	-	alr3482	-	hypothetical protein
3478	 44.62	0	4200149..4200343	+	64	17230975	-	asr3483	-	hypothetical protein
3479	 37.50	-1	4200467..4200658	+	63	17230976	-	asr3484	-	hypothetical protein
3480	 41.87	0	4200811..4201431	+	206	17230977	-	alr3485	-	hypothetical protein
3481	 44.01	0	4201526..4201909	+	127	17230978	-	alr3486	-	hypothetical protein
3482	 39.32	0	4202000..4202767	-	255	17230979	-	all3487	-	hypothetical protein
3483	 34.59	-1	4203144..4204019	-	291	17230980	-	all3488	-	hypothetical protein
3484	 45.67	0	4204205..4204504	-	99	17230981	-	all3489	-	hypothetical protein
3485	 32.40	-2	4204678..4205958	+	426	17230982	-	alr3490	-	hypothetical protein
3486	 34.97	-1	4205955..4206995	+	346	17230983	-	alr3491	-	hypothetical protein
3487	 40.08	0	4207010..4208254	+	414	17230984	-	alr3492	-	hypothetical protein
3488	 40.19	0	4208281..4208820	+	179	17230985	-	alr3493	-	hypothetical protein
3489	 46.56	+1	4209069..4209824	+	251	17230986	-	alr3494	-	hypothetical protein
3490	 47.62	+1	4209923..4210762	+	279	17230987	-	alr3495	-	hypothetical protein
3491	 29.86	-2	4210972..4211316	+	114	17230988	-	alr3496	-	hypothetical protein
3492	 35.41	-1	4211334..4212392	+	352	17230989	-	alr3497	-	hypothetical protein
3493	 42.65	0	4212846..4213049	+	67	17230990	-	asr3498	-	hypothetical protein
3494	 44.39	0	4213299..4213886	-	195	17230991	-	all3499	-	hypothetical protein
3495	 39.47	0	4214035..4217112	-	1025	17230992	-	all3500	-	hypothetical protein
3496	 35.96	-1	4217441..4217707	-	88	17230993	-	asl3501	-	hypothetical protein
3497	 33.74	-2	4217758..4218492	-	244	17230994	-	all3502	-	hypothetical protein
3498	 37.79	-1	4218695..4219882	-	395	17230995	-	all3503	-	hypothetical protein
3499	 32.47	-2	4220669..4221592	+	307	17230996	-	alr3504	-	hypothetical protein
3500	 44.46	0	4222175..4226074	+	1299	17230997	-	alr3505	-	hypothetical protein
3501	 44.75	0	4226612..4227592	+	326	17230998	-	alr3506	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
3502	 41.54	0	4227636..4228220	+	194	17230999	-	alr3507	-	hypothetical protein
3503	 35.99	-1	4228299..4228637	+	112	17231000	-	alr3508	-	hypothetical protein
3504	 44.27	0	4228667..4229617	-	316	17231001	-	all3509	-	nucleotide sugar epimerase
3505	 49.14	+1	4230076..4231353	+	425	17231002	-	alr3510	-	phosphoribosylamine--glycine ligase
3506	 45.00	0	4231592..4233451	+	619	17231003	-	alr3511	-	two-component sensor histidine kinase
3507	 42.90	0	4233568..4233933	+	121	17231004	-	alr3512	-	dihydroneopterin aldolase
3508	 43.68	0	4234048..4234482	+	144	17231005	-	alr3513	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.