IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3319	 43.29	0	4017914..4018345	-	143	17230816	-	all3324	-	hypothetical protein
3320	 45.57	0	4018460..4019914	-	484	17230817	-	all3325	-	hypothetical protein
3321	 45.08	0	4019932..4021131	-	399	17230818	-	all3326	-	hypothetical protein
3322	 41.45	0	4021240..4021818	-	192	17230819	-	all3327	-	hypothetical protein
3323	 44.44	0	4022295..4023059	-	254	17230820	kaiB	all3328	-	circadian oscillation regulator
3324	 44.42	0	4023220..4024518	-	432	17230821	pilT	all3329	-	twitching motility protein
3325	 41.33	0	4025223..4025597	+	124	17230822	-	alr3330	-	hypothetical protein
3326	 38.87	0	4025732..4027900	+	722	17230823	-	alr3331	-	ATP-dependent helicase
3327	 40.58	0	4028245..4028865	-	206	17230824	-	all3332	-	hypothetical protein
3328	 44.16	0	4028862..4030145	-	427	17230825	nrtA	all3333	-	nitrate-binding protein
3329	 42.30	0	4030233..4031024	-	263	17230826	nrtC	all3334	-	nitrate transport ATP-binding protein of ABC transporter
3330	 38.81	0	4031092..4031913	-	273	17230827	nrtB	all3335	-	ABC nitrate transport permease protein
3331	 37.85	-1	4032027..4032911	+	294	17230828	-	alr3336	-	hypothetical protein
3332	 42.53	0	4033203..4033550	+	115	17230829	-	alr3337	-	hypothetical protein
3333	 45.33	0	4033727..4035076	+	449	17230830	-	alr3338	-	phosphoglycerate mutase
3334	 49.31	+1	4035126..4036433	+	435	17230831	-	alr3339	-	dihydroorotase
3335	 44.09	0	4036436..4036909	+	157	17230832	-	alr3340	-	hypothetical protein
3336	 42.60	0	4037017..4037922	-	301	17230833	-	all3341	-	heterodisulfide reductase, subunit B
3337	 39.61	0	4038359..4038613	+	84	17230834	-	asr3342	-	acyl carrier protein
3338	 49.88	+1	4038834..4040084	+	416	17230835	-	alr3343	-	3-oxoacyl-(acyl carrier protein) synthase II
3339	 47.94	+1	4040456..4042468	+	670	17230836	-	alr3344	-	transketolase
3340	 42.33	0	4042803..4043825	+	340	17230837	-	alr3345	-	hypothetical protein
3341	 41.15	0	4043919..4048205	-	1428	17230838	-	all3346	-	hypothetical protein
3342	 34.76	-1	4048537..4050432	-	631	17230839	-	all3347	-	hypothetical protein
3343	 34.52	-1	4050503..4051174	-	223	17230840	-	all3348	-	two-component response regulator
3344	 33.76	-2	4051424..4052128	-	234	17230841	-	all3349	-	hypothetical protein
3345	 43.90	0	4052475..4053392	+	305	17230842	-	alr3350	-	histone deacetylase/AcuC/AphA family protein
3346	 45.96	0	4054079..4055218	+	379	17230843	-	alr3351	-	hypothetical protein
3347	 43.72	0	4055406..4055867	+	153	17230844	-	alr3352	-	hypothetical protein
3348	 48.05	+1	4056687..4058969	+	760	17230845	-	alr3353	-	hypothetical protein
3349	 44.77	0	4059043..4059951	-	302	17230846	mraW	all3354	-	S-adenosyl-methyltransferase MraW
3350	 47.85	+1	4060270..4061454	+	394	17230847	ndhH	alr3355	-	NAD(P)H-quinone oxidoreductase subunit H
3351	 43.89	0	4061957..4062496	+	179	17230848	-	alr3356	-	hypothetical protein
3352	 43.13	0	4062533..4063747	+	404	17230849	-	alr3357	-	hypothetical protein
3353	 44.94	0	4064099..4064977	+	292	17230850	-	alr3358	-	3-hydroxyacid dehydrogenase
3354	 38.64	0	4065023..4066285	-	420	17230851	-	all3359	-	two-component sensor histidine kinase
3355	 35.12	-1	4066309..4066476	-	55	17230852	-	asl3360	-	hypothetical protein
3356	 44.54	0	4067127..4068179	+	350	17230853	-	alr3361	-	hypothetical protein
3357	 44.80	0	4068269..4069027	+	252	17230854	-	alr3362	-	hypothetical protein
3358	 44.00	0	4069077..4070567	+	496	17230855	-	alr3363	-	hypothetical protein
3359	 45.40	0	4071005..4072570	+	521	17230856	-	alr3364	-	hypothetical protein
3360	 35.34	-1	4072818..4073816	+	332	17230857	-	alr3365	-	hypothetical protein
3361	 34.61	-1	4073883..4074275	+	130	17230858	-	alr3366	-	hypothetical protein
3362	 38.52	0	4074663..4077014	-	783	17230859	-	all3367	-	hypothetical protein
3363	 41.23	0	4077406..4077633	+	75	17230860	-	asr3368	-	hypothetical protein
3364	 43.17	0	4078644..4078826	+	60	17230861	-	asr3369	-	hypothetical protein
3365	 46.98	+1	4078966..4080255	+	429	17230862	-	alr3370	-	hypothetical protein
3366	 35.57	-1	4080573..4080974	-	133	17230863	-	all3371	-	transposase
3367	 38.67	0	4081021..4082145	+	374	17230864	-	alr3372	-	transposase
3368	 31.64	-2	4082294..4082707	-	137	17230865	-	all3373	-	hypothetical protein
3369	 46.07	0	4082801..4083931	-	376	17230866	recF	all3374	-	recombination protein F
3370	 47.98	+1	4084018..4086891	-	957	17230867	-	all3375	-	cation-transporting ATPase
3371	 42.98	0	4087237..4088916	+	559	17230868	-	alr3376	-	hypothetical protein
3372	 41.82	0	4089082..4089729	+	215	17230869	-	alr3377	-	hypothetical protein
3373	 44.20	0	4089834..4090772	-	312	17230870	-	all3378	-	hypothetical protein
3374	 44.82	0	4090779..4091483	+	234	17230871	-	alr3379	-	hypothetical protein
3375	 44.38	0	4091498..4092511	+	337	17230872	-	alr3380	-	dolichol-phosphate mannosyltransferase
3376	 44.59	0	4092717..4093826	+	369	17230873	-	alr3381	-	hypothetical protein
3377	 44.58	0	4093990..4094496	+	168	17230874	moaC	alr3382	-	molybdenum cofactor biosynthesis protein C
3378	 39.39	0	4094498..4094695	-	65	17230875	-	asl3383	-	hypothetical protein
3379	 40.83	0	4095152..4096045	+	297	17230876	-	alr3384	-	transposase
3380	 41.67	0	4096227..4097414	+	395	17230877	-	alr3385	-	hypothetical protein
3381	 38.80	0	4097421..4097804	+	127	17230878	-	alr3386	-	two-component response regulator
3382	 44.57	0	4098040..4098297	+	85	17230879	-	asr3387	-	hypothetical protein
3383	 38.51	0	4098417..4098725	+	102	17230880	-	alr3388	-	hypothetical protein
3384	 33.77	-2	4098781..4099008	+	75	17230881	-	asr3389	-	hypothetical protein
3385	 38.81	0	4099048..4099266	+	72	17230882	-	asr3390	-	hypothetical protein
3386	 39.49	0	4099345..4099815	-	156	17230883	-	all3391	-	hypothetical protein
3387	 44.67	0	4099892..4100932	-	346	17230884	cobW	all3392	-	cobalamin synthesis protein
3388	 39.37	0	4101132..4102076	+	314	17230885	-	alr3393	-	hypothetical protein
3389	 38.95	0	4102124..4102639	+	171	17230886	-	alr3394	-	hypothetical protein
3390	 46.99	+1	4102742..4104037	+	431	17230887	-	alr3395	-	adenylosuccinate lyase
3391	 39.56	0	4104126..4104446	-	106	17230888	srpB	all3396	-	sulfur-regulated protein
3392	 44.42	0	4105145..4107472	+	775	17230889	-	alr3397	-	phosphoenolpyruvate synthase
3393	 42.35	0	4107685..4108860	-	391	17230890	-	all3398	-	hypothetical protein
3394	 42.79	0	4109113..4109937	+	274	17230891	-	alr3399	-	hypothetical protein
3395	 45.81	0	4110317..4111486	+	389	17230892	-	alr3400	-	mannose-1-phosphate guanyltransferase
3396	 45.93	0	4111552..4113591	-	679	17230893	-	all3401	-	arginine decarboxylase
3397	 46.89	+1	4113842..4114195	+	117	17230894	-	alr3402	-	nucleoside diphosphate kinase
3398	 44.54	0	4114289..4115011	-	240	17230895	-	all3403	-	hypothetical protein
3399	 39.89	0	4115430..4115780	-	116	17230896	-	all3404	-	hypothetical protein
3400	 40.12	0	4115971..4116132	+	53	17230897	-	asr3405	-	hypothetical protein
3401	 34.27	-1	4116263..4117654	+	463	17230898	-	alr3406	-	hypothetical protein
3402	 33.99	-1	4117665..4118270	+	201	17230899	-	alr3407	-	hypothetical protein
3403	 46.87	+1	4118352..4119755	-	467	17230900	-	all3408	-	nicotinamide nucleotide transhydrogenase, subunit beta
3404	 40.82	0	4119752..4120045	-	97	17230901	-	asl3409	-	nicotinamide nucleotide transhydrogenase, subunit alpha
3405	 45.63	0	4120085..4121320	-	411	17230902	-	all3410	-	nicotinamide nucleotide transhydrogenase, subunit alpha
3406	 40.66	0	4121927..4122499	+	190	17230903	-	alr3411	-	hypothetical protein
3407	 51.11	+2	4122646..4122780	+	44	17230904	rpmH	asr3412	-	50S ribosomal protein L34
3408	 45.15	0	4122806..4123228	+	140	17230905	rnpA	alr3413	-	ribonuclease P
3409	 42.45	0	4123215..4123598	+	127	17230906	-	alr3414	-	hypothetical protein
3410	 45.49	0	4123813..4124955	+	380	17230907	-	alr3415	-	putative inner membrane protein translocase component YidC
3411	 42.20	0	4124959..4125477	+	172	17230908	-	alr3416	-	hypothetical protein
3412	 44.31	0	4125639..4126148	+	169	17230909	-	alr3417	-	hypothetical protein
3413	 43.22	0	4126272..4127747	-	491	17230910	-	all3418	-	hypothetical protein
3414	 44.69	0	4128039..4128725	+	228	17230911	-	alr3419	-	hypothetical protein
3415	 45.45	0	4128765..4130018	-	417	17230912	-	all3420	-	carboxyl-terminal processing protease
3416	 47.22	+1	4130387..4131034	+	215	17230913	petB	alr3421	-	cytochrome b6
3417	 46.17	+1	4131205..4131687	+	160	17230914	petD	alr3422	-	cytochrome b6-f complex subunit IV
3418	 45.05	0	4132013..4132456	+	147	17230915	-	alr3423	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.