IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3282	 37.35	-1	3962731..3963303	+	190	17230779	nrtB	alr3287	-	nitrate transport protein
3283	 40.68	0	3963307..3966462	-	1051	17230780	-	all3288	-	hypothetical protein
3284	 45.30	0	3966530..3970399	-	1289	17230781	-	all3289	-	hypothetical protein
3285	 43.46	0	3970396..3971925	-	509	17230782	-	all3290	-	hypothetical protein
3286	 43.83	0	3972087..3972629	-	180	17230783	-	all3291	-	hypothetical protein
3287	 44.22	0	3972716..3975295	-	859	17230784	-	all3292	-	hypothetical protein
3288	 46.36	+1	3975897..3977201	+	434	17230785	thrC	alr3293	-	threonine synthase
3289	 41.67	0	3977275..3977550	+	91	17230786	-	asr3294	-	hypothetical protein
3290	 35.65	-1	3977627..3977971	-	114	17230787	-	all3295	-	hypothetical protein
3291	 36.80	-1	3978123..3979160	+	345	17230788	-	alr3296	-	low specificity L-threonine aldolase
3292	 48.73	+1	3979394..3980023	+	209	17230789	-	alr3297	-	hypothetical protein
3293	 45.45	0	3980069..3980563	-	164	17230790	-	all3298	-	hypothetical protein
3294	 46.53	+1	3980635..3980922	+	95	17230791	-	asr3299	-	hypothetical protein
3295	 43.45	0	3981209..3982285	+	358	17230792	-	alr3300	-	magnesium-protoporphyrin IX monomethyl ester cyclase
3296	 42.21	0	3982489..3983322	+	277	17230793	-	alr3301	-	hypothetical protein
3297	 48.02	+1	3983334..3984041	+	235	17230794	-	alr3302	-	hypothetical protein
3298	 45.39	0	3984035..3985021	+	328	17230795	-	alr3303	-	hypothetical protein
3299	 44.97	0	3985044..3986426	+	460	17230796	-	alr3304	-	hypothetical protein
3300	 40.91	0	3987372..3988862	-	496	17230797	-	all3305	-	hypothetical protein
3301	 39.53	0	3989088..3989846	-	252	17230798	-	all3306	-	hypothetical protein
3302	 43.99	0	3990177..3991358	+	393	17230799	-	alr3307	-	hypothetical protein
3303	 42.09	0	3991422..3991718	+	98	17230800	-	asr3308	-	hypothetical protein
3304	 45.70	0	3991780..3991965	+	61	17230801	-	asr3309	-	hypothetical protein
3305	 39.68	0	3991999..3994095	-	698	17230802	-	all3310	-	hypothetical protein
3306	 44.49	0	3994744..3998766	+	1340	17230803	-	alr3311	-	hypothetical protein
3307	 45.17	0	3998809..3999129	+	106	17230804	-	alr3312	-	hypothetical protein
3308	 45.40	0	3999184..4000866	-	560	17230805	-	all3313	-	hypothetical protein
3309	 45.09	0	4000881..4005311	-	1476	17230806	-	all3314	-	hypothetical protein
3310	 42.59	0	4005381..4009388	-	1335	17230807	-	all3315	-	hypothetical protein
3311	 36.13	-1	4009489..4009953	-	154	17230808	-	all3316	-	hypothetical protein
3312	 44.21	0	4009956..4013651	-	1231	17230809	-	all3317	-	hypothetical protein
3313	 43.56	0	4013700..4014149	-	149	17230810	-	all3318	-	hypothetical protein
3314	 52.81	+2	4014151..4014453	-	100	17230811	-	all3319	-	hypothetical protein
3315	 48.14	+1	4014539..4016308	-	589	17230812	-	all3320	-	hypothetical protein
3316	 41.84	0	4016305..4017009	-	234	17230813	-	all3321	-	hypothetical protein
3317	 44.44	0	4017198..4017350	-	50	17230814	-	asl3322	-	hypothetical protein
3318	 43.85	0	4017399..4017902	-	167	17230815	-	all3323	-	hypothetical protein
3319	 43.29	0	4017914..4018345	-	143	17230816	-	all3324	-	hypothetical protein
3320	 45.57	0	4018460..4019914	-	484	17230817	-	all3325	-	hypothetical protein
3321	 45.08	0	4019932..4021131	-	399	17230818	-	all3326	-	hypothetical protein
3322	 41.45	0	4021240..4021818	-	192	17230819	-	all3327	-	hypothetical protein
3323	 44.44	0	4022295..4023059	-	254	17230820	kaiB	all3328	-	circadian oscillation regulator
3324	 44.42	0	4023220..4024518	-	432	17230821	pilT	all3329	-	twitching motility protein
3325	 41.33	0	4025223..4025597	+	124	17230822	-	alr3330	-	hypothetical protein
3326	 38.87	0	4025732..4027900	+	722	17230823	-	alr3331	-	ATP-dependent helicase
3327	 40.58	0	4028245..4028865	-	206	17230824	-	all3332	-	hypothetical protein
3328	 44.16	0	4028862..4030145	-	427	17230825	nrtA	all3333	-	nitrate-binding protein
3329	 42.30	0	4030233..4031024	-	263	17230826	nrtC	all3334	-	nitrate transport ATP-binding protein of ABC transporter
3330	 38.81	0	4031092..4031913	-	273	17230827	nrtB	all3335	-	ABC nitrate transport permease protein
3331	 37.85	-1	4032027..4032911	+	294	17230828	-	alr3336	-	hypothetical protein
3332	 42.53	0	4033203..4033550	+	115	17230829	-	alr3337	-	hypothetical protein
3333	 45.33	0	4033727..4035076	+	449	17230830	-	alr3338	-	phosphoglycerate mutase
3334	 49.31	+1	4035126..4036433	+	435	17230831	-	alr3339	-	dihydroorotase
3335	 44.09	0	4036436..4036909	+	157	17230832	-	alr3340	-	hypothetical protein
3336	 42.60	0	4037017..4037922	-	301	17230833	-	all3341	-	heterodisulfide reductase, subunit B
3337	 39.61	0	4038359..4038613	+	84	17230834	-	asr3342	-	acyl carrier protein
3338	 49.88	+1	4038834..4040084	+	416	17230835	-	alr3343	-	3-oxoacyl-(acyl carrier protein) synthase II
3339	 47.94	+1	4040456..4042468	+	670	17230836	-	alr3344	-	transketolase
3340	 42.33	0	4042803..4043825	+	340	17230837	-	alr3345	-	hypothetical protein
3341	 41.15	0	4043919..4048205	-	1428	17230838	-	all3346	-	hypothetical protein
3342	 34.76	-1	4048537..4050432	-	631	17230839	-	all3347	-	hypothetical protein
3343	 34.52	-1	4050503..4051174	-	223	17230840	-	all3348	-	two-component response regulator
3344	 33.76	-2	4051424..4052128	-	234	17230841	-	all3349	-	hypothetical protein
3345	 43.90	0	4052475..4053392	+	305	17230842	-	alr3350	-	histone deacetylase/AcuC/AphA family protein
3346	 45.96	0	4054079..4055218	+	379	17230843	-	alr3351	-	hypothetical protein
3347	 43.72	0	4055406..4055867	+	153	17230844	-	alr3352	-	hypothetical protein
3348	 48.05	+1	4056687..4058969	+	760	17230845	-	alr3353	-	hypothetical protein
3349	 44.77	0	4059043..4059951	-	302	17230846	mraW	all3354	-	S-adenosyl-methyltransferase MraW
3350	 47.85	+1	4060270..4061454	+	394	17230847	ndhH	alr3355	-	NAD(P)H-quinone oxidoreductase subunit H
3351	 43.89	0	4061957..4062496	+	179	17230848	-	alr3356	-	hypothetical protein
3352	 43.13	0	4062533..4063747	+	404	17230849	-	alr3357	-	hypothetical protein
3353	 44.94	0	4064099..4064977	+	292	17230850	-	alr3358	-	3-hydroxyacid dehydrogenase
3354	 38.64	0	4065023..4066285	-	420	17230851	-	all3359	-	two-component sensor histidine kinase
3355	 35.12	-1	4066309..4066476	-	55	17230852	-	asl3360	-	hypothetical protein
3356	 44.54	0	4067127..4068179	+	350	17230853	-	alr3361	-	hypothetical protein
3357	 44.80	0	4068269..4069027	+	252	17230854	-	alr3362	-	hypothetical protein
3358	 44.00	0	4069077..4070567	+	496	17230855	-	alr3363	-	hypothetical protein
3359	 45.40	0	4071005..4072570	+	521	17230856	-	alr3364	-	hypothetical protein
3360	 35.34	-1	4072818..4073816	+	332	17230857	-	alr3365	-	hypothetical protein
3361	 34.61	-1	4073883..4074275	+	130	17230858	-	alr3366	-	hypothetical protein
3362	 38.52	0	4074663..4077014	-	783	17230859	-	all3367	-	hypothetical protein
3363	 41.23	0	4077406..4077633	+	75	17230860	-	asr3368	-	hypothetical protein
3364	 43.17	0	4078644..4078826	+	60	17230861	-	asr3369	-	hypothetical protein
3365	 46.98	+1	4078966..4080255	+	429	17230862	-	alr3370	-	hypothetical protein
3366	 35.57	-1	4080573..4080974	-	133	17230863	-	all3371	-	transposase
3367	 38.67	0	4081021..4082145	+	374	17230864	-	alr3372	-	transposase
3368	 31.64	-2	4082294..4082707	-	137	17230865	-	all3373	-	hypothetical protein
3369	 46.07	0	4082801..4083931	-	376	17230866	recF	all3374	-	recombination protein F
3370	 47.98	+1	4084018..4086891	-	957	17230867	-	all3375	-	cation-transporting ATPase
3371	 42.98	0	4087237..4088916	+	559	17230868	-	alr3376	-	hypothetical protein
3372	 41.82	0	4089082..4089729	+	215	17230869	-	alr3377	-	hypothetical protein
3373	 44.20	0	4089834..4090772	-	312	17230870	-	all3378	-	hypothetical protein
3374	 44.82	0	4090779..4091483	+	234	17230871	-	alr3379	-	hypothetical protein
3375	 44.38	0	4091498..4092511	+	337	17230872	-	alr3380	-	dolichol-phosphate mannosyltransferase
3376	 44.59	0	4092717..4093826	+	369	17230873	-	alr3381	-	hypothetical protein
3377	 44.58	0	4093990..4094496	+	168	17230874	moaC	alr3382	-	molybdenum cofactor biosynthesis protein C
3378	 39.39	0	4094498..4094695	-	65	17230875	-	asl3383	-	hypothetical protein
3379	 40.83	0	4095152..4096045	+	297	17230876	-	alr3384	-	transposase
3380	 41.67	0	4096227..4097414	+	395	17230877	-	alr3385	-	hypothetical protein
3381	 38.80	0	4097421..4097804	+	127	17230878	-	alr3386	-	two-component response regulator
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.