IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3027	 32.15	-2	3672376..3672969	-	197	17230524	-	all3032	-	hypothetical protein
3028	 39.47	0	3673118..3674503	-	461	17230525	-	all3033	-	hypothetical protein
3029	 38.16	0	3674571..3675275	-	234	17230526	-	all3034	-	hypothetical protein
3030	 38.21	0	3675564..3676424	-	286	17230527	-	all3035	-	ATP-binding protein of nitrate ABC transporter
3031	 42.53	0	3676833..3677180	-	115	17230528	-	all3036	-	hypothetical protein
3032	 38.79	0	3678017..3679207	+	396	17230529	-	alr3037	-	two-component sensor histidine kinase
3033	 46.37	+1	3679339..3680289	+	316	17230530	-	alr3038	-	hypothetical protein
3034	 51.39	+2	3680427..3680786	-	119	17230531	-	all3039	-	hypothetical protein
3035	 49.43	+1	3680976..3682118	-	380	17230532	-	all3040	-	hypothetical protein
3036	 48.61	+1	3682367..3685489	-	1040	17230533	-	all3041	-	hypothetical protein
3037	 44.61	0	3686003..3686206	+	67	17230534	-	asr3042	-	high light inducible protein
3038	 46.57	+1	3686251..3686454	+	67	17230535	-	asr3043	-	high light inducible protein
3039	 36.16	-1	3686631..3687125	-	164	17230536	-	all3044	-	hypothetical protein
3040	 38.60	0	3687203..3688720	-	505	17230537	-	all3045	-	hypothetical protein
3041	 31.91	-2	3689051..3689542	+	163	17230538	-	alr3046	-	hypothetical protein
3042	 38.31	0	3689723..3690667	-	314	17230539	-	all3047	-	hypothetical protein
3043	 45.87	0	3690925..3691578	-	217	17230540	-	all3048	-	hypothetical protein
3044	 38.46	0	3691853..3692242	-	129	17230541	-	all3049	-	hypothetical protein
3045	 45.36	0	3693111..3693983	+	290	161353746	-	alr3050	-	3-deoxy-7-phosphoheptulonate synthase
3046	 38.69	0	3694114..3694524	-	136	17230543	-	all3051	-	hypothetical protein
3047	 42.01	0	3694549..3695355	+	268	17230544	-	alr3052	-	hypothetical protein
3048	 37.57	-1	3695582..3695770	+	62	17230545	-	asr3053	-	hypothetical protein
3049	 45.91	0	3696127..3699243	-	1038	17230546	-	all3054	-	hypothetical protein
3050	 47.10	+1	3699535..3701226	+	563	17230547	mutL	alr3055	-	DNA mismatch repair protein
3051	 46.91	+1	3701406..3702701	+	431	17230548	hisD	alr3056	-	histidinol dehydrogenase
3052	 43.95	0	3703378..3704592	+	404	17230549	-	alr3057	-	hypothetical protein
3053	 43.68	0	3704628..3705854	+	408	17230550	-	alr3058	-	hypothetical protein
3054	 45.74	0	3705960..3708143	+	727	17230551	-	alr3059	-	hypothetical protein
3055	 42.70	0	3708146..3709555	+	469	17230552	-	alr3060	-	hypothetical protein
3056	 33.98	-1	3709624..3710703	+	359	17230553	-	alr3061	-	hypothetical protein
3057	 36.96	-1	3710770..3711735	+	321	17230554	-	alr3062	-	hypothetical protein
3058	 35.65	-1	3711770..3712762	+	330	17230555	-	alr3063	-	hypothetical protein
3059	 46.71	+1	3712759..3714171	+	470	17230556	-	alr3064	-	hypothetical protein
3060	 36.57	-1	3714158..3715423	+	421	17230557	-	alr3065	-	hypothetical protein
3061	 33.86	-1	3715434..3716564	+	376	17230558	-	alr3066	-	polysaccharide polymerization protein
3062	 34.77	-1	3716581..3717552	+	323	17230559	-	alr3067	-	hypothetical protein
3063	 35.12	-1	3717602..3718552	+	316	17230560	-	alr3068	-	hypothetical protein
3064	 40.27	0	3718782..3719963	+	393	17230561	-	alr3069	-	hypothetical protein
3065	 38.14	0	3719986..3720942	+	318	17230562	-	alr3070	-	hypothetical protein
3066	 40.96	0	3720982..3721938	+	318	17230563	-	alr3071	-	hypothetical protein
3067	 34.20	-1	3721992..3723263	+	423	17230564	-	alr3072	-	hypothetical protein
3068	 34.15	-1	3723391..3724365	+	324	17230565	-	alr3073	-	hypothetical protein
3069	 44.19	0	3724431..3725480	+	349	17230566	lpxD	alr3074	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
3070	 43.27	0	3725610..3726203	-	197	17230567	maf	all3075	-	Maf-like protein
3071	 41.70	0	3726394..3727134	-	246	17230568	-	all3076	-	hypothetical protein
3072	 39.90	0	3727151..3727774	+	207	17230569	-	alr3077	-	hypothetical protein
3073	 42.69	0	3727905..3728909	+	334	17230570	-	alr3078	-	hypothetical protein
3074	 44.68	0	3729034..3729597	+	187	17230571	def	alr3079	-	peptide deformylase
3075	 44.61	0	3729610..3729813	+	67	17230572	-	asr3080	-	hypothetical protein
3076	 44.76	0	3730015..3730224	+	69	17230573	-	asr3081	-	hypothetical protein
3077	 41.96	0	3730379..3730633	+	84	17230574	-	asr3082	-	hypothetical protein
3078	 42.24	0	3730711..3731979	-	422	17230575	-	all3083	-	hypothetical protein
3079	 37.07	-1	3732297..3732965	-	222	17230576	-	all3084	-	hypothetical protein
3080	 41.87	0	3733322..3734047	+	241	17230577	-	alr3085	-	sugar fermentation stimulation protein A
3081	 38.51	0	3734056..3734538	+	160	17230578	-	alr3086	-	gluconokinase
3082	 39.04	0	3734640..3736268	-	542	17230579	-	all3087	-	hypothetical protein
3083	 45.45	0	3736385..3737548	+	387	17230580	nifS	alr3088	-	class-V aminotransferase
3084	 43.22	0	3737880..3738152	+	90	17230581	-	asr3089	-	transglycosylase-associated protein
3085	 42.71	0	3738323..3739015	+	230	17230582	-	alr3090	-	hypothetical protein
3086	 43.07	0	3739240..3739968	+	242	17230583	-	alr3091	-	hypothetical protein
3087	 43.79	0	3740834..3744706	+	1290	17230584	-	alr3092	-	two-component hybrid sensor and regulator
3088	 48.26	+1	3745060..3746580	-	506	17230585	purH	all3093	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3089	 38.54	0	3746674..3746865	-	63	17230586	-	asl3094	-	hypothetical protein
3090	 45.30	0	3747036..3748004	+	322	17230587	-	alr3095	-	hypothetical protein
3091	 36.56	-1	3748020..3748979	+	319	17230588	-	alr3096	-	phosphate permease
3092	 35.91	-1	3749022..3750029	+	335	17230589	-	alr3097	-	hypothetical protein
3093	 40.85	0	3750606..3750818	+	70	17230590	-	asr3098	-	hypothetical protein
3094	 46.35	+1	3751026..3752270	+	414	17230591	-	alr3099	-	hypothetical protein
3095	 44.30	0	3752321..3752776	+	151	17230592	-	alr3100	-	Holliday junction resolvase-like protein
3096	 40.74	0	3752848..3753495	+	215	17230593	-	alr3101	-	hypothetical protein
3097	 45.37	0	3753779..3754318	+	179	17230594	-	alr3102	-	hypothetical protein
3098	 46.40	+1	3754820..3755929	+	369	161353745	-	alr3103	-	gamma-glutamyl kinase
3099	 40.00	0	3756274..3756738	-	154	17230596	-	all3104	-	hypothetical protein
3100	 25.51	-2	3757535..3758518	+	327	17230597	-	alr3105	-	hypothetical protein
3101	 37.78	-1	3758745..3759104	+	119	17230598	-	alr3106	-	hypothetical protein
3102	 34.81	-1	3759195..3760412	-	405	17230599	-	all3107	-	hypothetical protein
3103	 44.09	0	3760608..3760988	-	126	17230600	-	all3108	-	hypothetical protein
3104	 44.79	0	3761116..3761307	+	63	17230601	-	asr3109	-	hypothetical protein
3105	 36.54	-1	3761376..3762185	-	269	17230602	-	all3110	-	hypothetical protein
3106	 45.01	0	3762327..3763559	-	410	17230603	-	all3111	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
3107	 44.72	0	3763635..3763880	-	81	17230604	-	asl3112	-	hypothetical protein
3108	 44.19	0	3764002..3764646	-	214	17230605	-	all3113	-	serine esterase
3109	 46.62	+1	3764872..3766602	-	576	17230606	-	all3114	-	hypothetical protein
3110	 41.74	0	3767071..3770091	+	1006	17230607	-	alr3115	-	hypothetical protein
3111	 43.36	0	3770158..3770895	-	245	17230608	-	all3116	-	hypothetical protein
3112	 41.29	0	3771124..3771387	-	87	17230609	-	asl3117	-	hypothetical protein
3113	 40.64	0	3771735..3772979	-	414	17230610	-	all3118	-	hypothetical protein
3114	 40.92	0	3773445..3775475	+	676	17230611	-	alr3119	-	hypothetical protein
3115	 46.83	+1	3775927..3779787	+	1286	17230612	-	alr3120	-	two-component hybrid sensor and regulator
3116	 42.91	0	3779784..3780932	+	382	17230613	-	alr3121	-	two-component hybrid sensor and regulator
3117	 46.02	0	3781216..3781956	+	246	17230614	ccdA	alr3122	-	hypothetical protein
3118	 43.36	0	3781960..3783345	+	461	17230615	ycf44	alr3123	-	c-type cytochrome biogenesis protein Ccs1
3119	 36.01	-1	3783426..3783761	-	111	17230616	-	all3124	-	hypothetical protein
3120	 44.96	0	3784286..3784999	+	237	17230617	-	alr3125	-	heme oxygenase
3121	 39.84	0	3785366..3786748	+	460	17230618	-	alr3126	-	coproporphyrinogen III oxidase
3122	 45.65	0	3786995..3787903	-	302	17230619	-	all3127	-	hypothetical protein
3123	 45.05	0	3788158..3788430	-	90	17230620	-	asl3128	-	hypothetical protein
3124	 39.65	0	3788539..3788823	-	94	17230621	-	asl3129	-	hypothetical protein
3125	 46.67	+1	3788968..3789447	-	159	17230622	-	all3130	-	hypothetical protein
3126	 38.92	0	3789946..3790554	-	202	17230623	-	all3131	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.