IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2978	 48.81	+1	3625025..3625741	+	238	17230475	-	alr2983	-	orotidine 5'-phosphate decarboxylase
2979	 44.49	0	3625738..3626454	+	238	17230476	-	alr2984	-	hypothetical protein
2980	 31.48	-2	3626633..3626848	+	71	17230477	-	asr2985	-	hypothetical protein
2981	 43.27	0	3627154..3629811	+	885	17230478	-	alr2986	-	hypothetical protein
2982	 34.52	-1	3630037..3630960	+	307	17230479	-	alr2987	-	hypothetical protein
2983	 40.39	0	3630982..3631548	+	188	17230480	-	alr2988	-	hypothetical protein
2984	 43.35	0	3631555..3632403	-	282	17230481	-	all2989	-	hypothetical protein
2985	 47.27	+1	3632823..3634889	+	688	17230482	dnaK	alr2990	-	molecular chaperone DnaK
2986	 42.71	0	3635083..3636084	+	333	17230483	dnaJ	alr2991	-	DnaJ protein
2987	 41.38	0	3636103..3636972	-	289	17230484	-	all2992	-	hypothetical protein
2988	 43.85	0	3637156..3637659	+	167	17230485	dnaJ	alr2993	-	DnaJ protein
2989	 45.79	0	3637666..3637938	+	90	17230486	-	asr2994	-	hypothetical protein
2990	 44.27	0	3638046..3638795	-	249	17230487	-	all2995	-	undecaprenyl pyrophosphate synthetase
2991	 46.48	+1	3638792..3639757	-	321	17230488	-	all2996	-	hypothetical protein
2992	 44.01	0	3639854..3641248	-	464	17230489	-	all2997	-	diaminopimelate decarboxylase
2993	 44.63	0	3641341..3641889	+	182	17230490	-	alr2998	-	ribosomal-protein-alanine acetyltransferase
2994	 49.56	+1	3642344..3644863	+	839	17230491	clpB	alr2999	-	endopeptidase Clp ATP-binding chain
2995	 32.89	-2	3644951..3646087	-	378	17230492	-	all3000	-	hypothetical protein
2996	 33.33	-2	3646362..3646529	+	55	17230493	-	asr3001	-	hypothetical protein
2997	 33.77	-2	3646552..3646779	+	75	17230494	-	asr3002	-	hypothetical protein
2998	 36.48	-1	3646956..3647273	+	105	17230495	-	alr3003	-	hypothetical protein
2999	 37.67	-1	3647270..3647638	+	122	17230496	-	alr3004	-	hypothetical protein
3000	 37.90	0	3647772..3647990	+	72	17230497	-	asr3005	-	hypothetical protein
3001	 38.58	0	3648076..3648342	+	88	17230498	-	asr3006	-	hypothetical protein
3002	 36.24	-1	3648603..3649358	-	251	17230499	-	all3007	-	hypothetical protein
3003	 45.73	0	3649895..3650257	+	120	17230500	-	alr3008	-	hypothetical protein
3004	 43.11	0	3650459..3651256	+	265	17230501	-	alr3009	-	hypothetical protein
3005	 41.69	0	3651585..3653426	-	613	17230502	-	all3010	-	hypothetical protein
3006	 46.59	+1	3653702..3654478	-	258	17230503	-	all3011	-	hypothetical protein
3007	 45.00	0	3654808..3655956	+	382	17230504	degT	alr3012	-	pleiotropic regulatory protein
3008	 45.70	0	3656204..3656947	-	247	17230505	-	all3013	-	hypothetical protein
3009	 38.29	0	3657097..3657459	-	120	17230506	-	all3014	-	hypothetical protein
3010	 37.01	-1	3657656..3658009	+	117	17230507	-	alr3015	-	hypothetical protein
3011	 43.44	0	3658002..3658664	-	220	17230508	-	all3016	-	hypothetical protein
3012	 40.76	0	3658917..3659939	+	340	17230509	-	alr3017	-	hypothetical protein
3013	 44.01	0	3660111..3660794	+	227	17230510	-	alr3018	-	hypothetical protein
3014	 40.35	0	3661406..3661633	+	75	17230511	-	asr3019	-	hypothetical protein
3015	 43.61	0	3661774..3662766	+	330	17230512	-	alr3020	-	hypothetical protein
3016	 40.08	0	3663270..3663788	-	172	17230513	-	all3021	-	hypothetical protein
3017	 44.16	0	3663957..3664418	-	153	17230514	-	all3022	-	hypothetical protein
3018	 37.37	-1	3664542..3665036	-	164	17230515	-	all3023	-	hypothetical protein
3019	 35.76	-1	3665174..3665668	-	164	17230516	-	all3024	-	hypothetical protein
3020	 43.48	0	3665742..3666017	-	91	17230517	-	asl3025	-	hypothetical protein
3021	 40.72	0	3666133..3666687	+	184	17230518	-	alr3026	-	hypothetical protein
3022	 43.12	0	3666671..3668008	+	445	17230519	-	alr3027	-	hypothetical protein
3023	 43.38	0	3668179..3669273	-	364	17230520	-	all3028	-	extracellular solute-binding protein
3024	 34.65	-1	3669440..3669820	-	126	17230521	-	all3029	-	hypothetical protein
3025	 31.93	-2	3669821..3670318	-	165	17230522	-	all3030	-	hypothetical protein
3026	 37.56	-1	3670334..3672133	-	599	17230523	-	all3031	-	hypothetical protein
3027	 32.15	-2	3672376..3672969	-	197	17230524	-	all3032	-	hypothetical protein
3028	 39.47	0	3673118..3674503	-	461	17230525	-	all3033	-	hypothetical protein
3029	 38.16	0	3674571..3675275	-	234	17230526	-	all3034	-	hypothetical protein
3030	 38.21	0	3675564..3676424	-	286	17230527	-	all3035	-	ATP-binding protein of nitrate ABC transporter
3031	 42.53	0	3676833..3677180	-	115	17230528	-	all3036	-	hypothetical protein
3032	 38.79	0	3678017..3679207	+	396	17230529	-	alr3037	-	two-component sensor histidine kinase
3033	 46.37	+1	3679339..3680289	+	316	17230530	-	alr3038	-	hypothetical protein
3034	 51.39	+2	3680427..3680786	-	119	17230531	-	all3039	-	hypothetical protein
3035	 49.43	+1	3680976..3682118	-	380	17230532	-	all3040	-	hypothetical protein
3036	 48.61	+1	3682367..3685489	-	1040	17230533	-	all3041	-	hypothetical protein
3037	 44.61	0	3686003..3686206	+	67	17230534	-	asr3042	-	high light inducible protein
3038	 46.57	+1	3686251..3686454	+	67	17230535	-	asr3043	-	high light inducible protein
3039	 36.16	-1	3686631..3687125	-	164	17230536	-	all3044	-	hypothetical protein
3040	 38.60	0	3687203..3688720	-	505	17230537	-	all3045	-	hypothetical protein
3041	 31.91	-2	3689051..3689542	+	163	17230538	-	alr3046	-	hypothetical protein
3042	 38.31	0	3689723..3690667	-	314	17230539	-	all3047	-	hypothetical protein
3043	 45.87	0	3690925..3691578	-	217	17230540	-	all3048	-	hypothetical protein
3044	 38.46	0	3691853..3692242	-	129	17230541	-	all3049	-	hypothetical protein
3045	 45.36	0	3693111..3693983	+	290	161353746	-	alr3050	-	3-deoxy-7-phosphoheptulonate synthase
3046	 38.69	0	3694114..3694524	-	136	17230543	-	all3051	-	hypothetical protein
3047	 42.01	0	3694549..3695355	+	268	17230544	-	alr3052	-	hypothetical protein
3048	 37.57	-1	3695582..3695770	+	62	17230545	-	asr3053	-	hypothetical protein
3049	 45.91	0	3696127..3699243	-	1038	17230546	-	all3054	-	hypothetical protein
3050	 47.10	+1	3699535..3701226	+	563	17230547	mutL	alr3055	-	DNA mismatch repair protein
3051	 46.91	+1	3701406..3702701	+	431	17230548	hisD	alr3056	-	histidinol dehydrogenase
3052	 43.95	0	3703378..3704592	+	404	17230549	-	alr3057	-	hypothetical protein
3053	 43.68	0	3704628..3705854	+	408	17230550	-	alr3058	-	hypothetical protein
3054	 45.74	0	3705960..3708143	+	727	17230551	-	alr3059	-	hypothetical protein
3055	 42.70	0	3708146..3709555	+	469	17230552	-	alr3060	-	hypothetical protein
3056	 33.98	-1	3709624..3710703	+	359	17230553	-	alr3061	-	hypothetical protein
3057	 36.96	-1	3710770..3711735	+	321	17230554	-	alr3062	-	hypothetical protein
3058	 35.65	-1	3711770..3712762	+	330	17230555	-	alr3063	-	hypothetical protein
3059	 46.71	+1	3712759..3714171	+	470	17230556	-	alr3064	-	hypothetical protein
3060	 36.57	-1	3714158..3715423	+	421	17230557	-	alr3065	-	hypothetical protein
3061	 33.86	-1	3715434..3716564	+	376	17230558	-	alr3066	-	polysaccharide polymerization protein
3062	 34.77	-1	3716581..3717552	+	323	17230559	-	alr3067	-	hypothetical protein
3063	 35.12	-1	3717602..3718552	+	316	17230560	-	alr3068	-	hypothetical protein
3064	 40.27	0	3718782..3719963	+	393	17230561	-	alr3069	-	hypothetical protein
3065	 38.14	0	3719986..3720942	+	318	17230562	-	alr3070	-	hypothetical protein
3066	 40.96	0	3720982..3721938	+	318	17230563	-	alr3071	-	hypothetical protein
3067	 34.20	-1	3721992..3723263	+	423	17230564	-	alr3072	-	hypothetical protein
3068	 34.15	-1	3723391..3724365	+	324	17230565	-	alr3073	-	hypothetical protein
3069	 44.19	0	3724431..3725480	+	349	17230566	lpxD	alr3074	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
3070	 43.27	0	3725610..3726203	-	197	17230567	maf	all3075	-	Maf-like protein
3071	 41.70	0	3726394..3727134	-	246	17230568	-	all3076	-	hypothetical protein
3072	 39.90	0	3727151..3727774	+	207	17230569	-	alr3077	-	hypothetical protein
3073	 42.69	0	3727905..3728909	+	334	17230570	-	alr3078	-	hypothetical protein
3074	 44.68	0	3729034..3729597	+	187	17230571	def	alr3079	-	peptide deformylase
3075	 44.61	0	3729610..3729813	+	67	17230572	-	asr3080	-	hypothetical protein
3076	 44.76	0	3730015..3730224	+	69	17230573	-	asr3081	-	hypothetical protein
3077	 41.96	0	3730379..3730633	+	84	17230574	-	asr3082	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.