IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2919	 36.00	-1	3563275..3563574	-	99	17230416	-	all2924	-	hypothetical protein
2920	 43.69	0	3563809..3564291	+	160	17230417	-	alr2925	-	hypothetical protein
2921	 41.88	0	3564298..3564987	+	229	17230418	-	alr2926	-	hypothetical protein
2922	 42.36	0	3565116..3565514	+	132	17230419	-	alr2927	-	hypothetical protein
2923	 47.12	+1	3565811..3566122	-	103	17230420	rbpB	all2928	-	RNA-binding protein
2924	 43.27	0	3566296..3567090	-	264	17230421	ecaA	all2929	-	carbonic anhydrase
2925	 39.57	0	3567119..3567487	-	122	17230422	-	all2930	-	hypothetical protein
2926	 45.28	0	3567799..3568275	-	158	17230423	-	all2931	-	hypothetical protein
2927	 41.96	0	3568926..3569180	+	84	17230424	-	asr2932	-	hypothetical protein
2928	 44.85	0	3569181..3570413	+	410	17230425	-	alr2933	-	membrane-bound lytic transglycosylase A
2929	 44.68	0	3570447..3571451	-	334	17230426	-	all2934	-	hypothetical protein
2930	 46.24	+1	3572277..3573392	+	371	17230427	-	alr2935	-	hypothetical protein
2931	 46.29	+1	3573576..3575180	+	534	17230428	panC	alr2936	-	bifunctional pantoate ligase/cytidylate kinase
2932	 36.19	-1	3575570..3575779	+	69	17230429	-	asr2937	-	hypothetical protein
2933	 44.44	0	3576003..3576605	+	200	17230430	sodB	alr2938	-	iron superoxide dismutase
2934	 40.10	0	3577154..3577360	+	68	17230431	-	asr2939	-	hypothetical protein
2935	 41.92	0	3577944..3578630	+	228	17230432	-	alr2940	-	hypothetical protein
2936	 40.43	0	3578718..3580436	-	572	17230433	-	all2941	-	hypothetical protein
2937	 35.11	-1	3580468..3580692	-	74	17230434	-	asl2942	-	hypothetical protein
2938	 40.08	0	3580794..3581297	+	167	17230435	-	alr2943	-	hypothetical protein
2939	 38.31	0	3581323..3582045	+	240	17230436	-	alr2944	-	hypothetical protein
2940	 37.59	-1	3582106..3583608	+	500	17230437	-	alr2945	-	bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein
2941	 35.78	-1	3583851..3584954	+	367	17230438	-	alr2946	-	hypothetical protein
2942	 41.67	0	3585383..3585814	+	143	17230439	-	alr2947	-	hypothetical protein
2943	 44.15	0	3586169..3587176	+	335	17230440	-	alr2948	-	hypothetical protein
2944	 38.70	0	3587522..3589384	+	620	17230441	-	alr2949	-	hypothetical protein
2945	 38.77	0	3589526..3590740	-	404	17230442	-	all2950	-	hypothetical protein
2946	 45.05	0	3590670..3592223	-	517	17230443	-	all2951	-	hypothetical protein
2947	 45.86	0	3592495..3594762	-	755	17230444	-	all2952	-	penicillin-binding protein
2948	 44.17	0	3595614..3595853	+	79	17230445	-	asr2953	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin ase
2949	 44.81	0	3595939..3596487	+	182	17230446	-	alr2954	-	hypothetical protein
2950	 38.42	0	3596590..3596982	-	130	17230447	-	all2955	-	two-component response regulator
2951	 39.39	0	3597005..3598654	-	549	17230448	-	all2956	-	two-component sensor histidine kinase
2952	 44.95	0	3599032..3600624	+	530	17230449	-	alr2957	-	hypothetical protein
2953	 42.86	0	3600666..3600896	+	76	17230450	-	asr2958	-	hypothetical protein
2954	 41.16	0	3600932..3601225	+	97	17230451	-	asr2959	-	hypothetical protein
2955	 33.60	-2	3601306..3602052	-	248	17230452	-	all2960	-	hypothetical protein
2956	 34.31	-1	3602089..3603009	-	306	17230453	-	all2961	-	hypothetical protein
2957	 35.28	-1	3602990..3603298	-	102	17230454	-	all2962	-	transcriptional regulator
2958	 41.95	0	3603935..3604816	-	293	17230455	-	all2963	-	oxidoreductase
2959	 44.62	0	3605481..3606809	-	442	17230456	-	all2964	-	hypothetical protein
2960	 32.72	-2	3607081..3607569	-	162	17230457	-	all2965	-	hypothetical protein
2961	 41.82	0	3607854..3608690	+	278	17230458	-	alr2966	-	hypothetical protein
2962	 39.57	0	3608856..3609272	+	138	17230459	-	alr2967	-	hypothetical protein
2963	 43.41	0	3609625..3610755	+	376	17230460	aksA	alr2968	-	trans-homoaconitate synthase
2964	 33.05	-2	3611012..3612751	-	579	17230461	-	all2969	-	hypothetical protein
2965	 48.38	+1	3612905..3614632	-	575	17230462	sdhA	all2970	-	succinate dehydrogenase flavoprotein subunit
2966	 37.42	-1	3614771..3615088	-	105	17230463	-	all2971	-	hypothetical protein
2967	 46.14	+1	3615380..3616027	+	215	17230464	-	alr2972	-	hypothetical protein
2968	 44.22	0	3616207..3617235	+	342	17230465	glk	alr2973	-	glucokinase
2969	 39.51	0	3617251..3617898	+	215	17230466	-	alr2974	-	hypothetical protein
2970	 43.63	0	3618030..3618602	+	190	17230467	-	alr2975	-	hypothetical protein
2971	 41.57	0	3618826..3619359	-	177	17230468	-	all2976	-	hypothetical protein
2972	 41.87	0	3619432..3619806	-	124	17230469	-	all2977	-	hypothetical protein
2973	 40.61	0	3619937..3620101	+	54	17230470	-	asr2978	-	hypothetical protein
2974	 42.58	0	3620173..3621135	+	320	17230471	-	alr2979	-	hypothetical protein
2975	 40.43	0	3621248..3621571	+	107	17230472	-	alr2980	-	hypothetical protein
2976	 46.13	+1	3621686..3623608	-	640	17230473	-	all2981	-	penicillin-binding protein
2977	 44.78	0	3623785..3624981	+	398	17230474	tyrS	alr2982	-	tyrosyl-tRNA synthetase
2978	 48.81	+1	3625025..3625741	+	238	17230475	-	alr2983	-	orotidine 5'-phosphate decarboxylase
2979	 44.49	0	3625738..3626454	+	238	17230476	-	alr2984	-	hypothetical protein
2980	 31.48	-2	3626633..3626848	+	71	17230477	-	asr2985	-	hypothetical protein
2981	 43.27	0	3627154..3629811	+	885	17230478	-	alr2986	-	hypothetical protein
2982	 34.52	-1	3630037..3630960	+	307	17230479	-	alr2987	-	hypothetical protein
2983	 40.39	0	3630982..3631548	+	188	17230480	-	alr2988	-	hypothetical protein
2984	 43.35	0	3631555..3632403	-	282	17230481	-	all2989	-	hypothetical protein
2985	 47.27	+1	3632823..3634889	+	688	17230482	dnaK	alr2990	-	molecular chaperone DnaK
2986	 42.71	0	3635083..3636084	+	333	17230483	dnaJ	alr2991	-	DnaJ protein
2987	 41.38	0	3636103..3636972	-	289	17230484	-	all2992	-	hypothetical protein
2988	 43.85	0	3637156..3637659	+	167	17230485	dnaJ	alr2993	-	DnaJ protein
2989	 45.79	0	3637666..3637938	+	90	17230486	-	asr2994	-	hypothetical protein
2990	 44.27	0	3638046..3638795	-	249	17230487	-	all2995	-	undecaprenyl pyrophosphate synthetase
2991	 46.48	+1	3638792..3639757	-	321	17230488	-	all2996	-	hypothetical protein
2992	 44.01	0	3639854..3641248	-	464	17230489	-	all2997	-	diaminopimelate decarboxylase
2993	 44.63	0	3641341..3641889	+	182	17230490	-	alr2998	-	ribosomal-protein-alanine acetyltransferase
2994	 49.56	+1	3642344..3644863	+	839	17230491	clpB	alr2999	-	endopeptidase Clp ATP-binding chain
2995	 32.89	-2	3644951..3646087	-	378	17230492	-	all3000	-	hypothetical protein
2996	 33.33	-2	3646362..3646529	+	55	17230493	-	asr3001	-	hypothetical protein
2997	 33.77	-2	3646552..3646779	+	75	17230494	-	asr3002	-	hypothetical protein
2998	 36.48	-1	3646956..3647273	+	105	17230495	-	alr3003	-	hypothetical protein
2999	 37.67	-1	3647270..3647638	+	122	17230496	-	alr3004	-	hypothetical protein
3000	 37.90	0	3647772..3647990	+	72	17230497	-	asr3005	-	hypothetical protein
3001	 38.58	0	3648076..3648342	+	88	17230498	-	asr3006	-	hypothetical protein
3002	 36.24	-1	3648603..3649358	-	251	17230499	-	all3007	-	hypothetical protein
3003	 45.73	0	3649895..3650257	+	120	17230500	-	alr3008	-	hypothetical protein
3004	 43.11	0	3650459..3651256	+	265	17230501	-	alr3009	-	hypothetical protein
3005	 41.69	0	3651585..3653426	-	613	17230502	-	all3010	-	hypothetical protein
3006	 46.59	+1	3653702..3654478	-	258	17230503	-	all3011	-	hypothetical protein
3007	 45.00	0	3654808..3655956	+	382	17230504	degT	alr3012	-	pleiotropic regulatory protein
3008	 45.70	0	3656204..3656947	-	247	17230505	-	all3013	-	hypothetical protein
3009	 38.29	0	3657097..3657459	-	120	17230506	-	all3014	-	hypothetical protein
3010	 37.01	-1	3657656..3658009	+	117	17230507	-	alr3015	-	hypothetical protein
3011	 43.44	0	3658002..3658664	-	220	17230508	-	all3016	-	hypothetical protein
3012	 40.76	0	3658917..3659939	+	340	17230509	-	alr3017	-	hypothetical protein
3013	 44.01	0	3660111..3660794	+	227	17230510	-	alr3018	-	hypothetical protein
3014	 40.35	0	3661406..3661633	+	75	17230511	-	asr3019	-	hypothetical protein
3015	 43.61	0	3661774..3662766	+	330	17230512	-	alr3020	-	hypothetical protein
3016	 40.08	0	3663270..3663788	-	172	17230513	-	all3021	-	hypothetical protein
3017	 44.16	0	3663957..3664418	-	153	17230514	-	all3022	-	hypothetical protein
3018	 37.37	-1	3664542..3665036	-	164	17230515	-	all3023	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.