IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2842	 43.85	0	3468944..3470056	-	370	17230339	cbiD	all2847	-	cobalt-precorrin-6A synthase
2843	 43.43	0	3470093..3470389	-	98	17230340	-	asl2848	-	hypothetical protein
2844	 40.07	0	3470430..3471023	-	197	17230341	-	all2849	-	hypothetical protein
2845	 47.26	+1	3471344..3471580	-	78	17230342	-	asl2850	-	hypothetical protein
2846	 46.68	+1	3472110..3473330	+	406	17230343	-	alr2851	-	hypothetical protein
2847	 42.92	0	3473424..3474539	-	371	17230344	-	all2852	-	hypothetical protein
2848	 43.92	0	3474859..3475869	-	336	17230345	-	all2853	-	UDP-glucose 4-epimerase
2849	 42.13	0	3475866..3477275	-	469	17230346	-	all2854	-	hypothetical protein
2850	 31.08	-2	3477644..3477865	-	73	17230347	-	asl2855	-	hypothetical protein
2851	 41.84	0	3478542..3480752	+	736	17230348	-	alr2856	-	hypothetical protein
2852	 33.40	-2	3481174..3482637	+	487	17230349	-	alr2857	-	hypothetical protein
2853	 34.90	-1	3482663..3483427	+	254	17230350	-	alr2858	-	hypothetical protein
2854	 29.58	-2	3483557..3484435	+	292	17230351	-	alr2859	-	hypothetical protein
2855	 29.95	-2	3484551..3485792	+	413	17230352	-	alr2860	-	hypothetical protein
2856	 24.38	-2	3485859..3487265	+	468	17230353	-	alr2861	-	hypothetical protein
2857	 34.24	-1	3487308..3487856	+	182	17230354	-	alr2862	-	hypothetical protein
2858	 34.58	-1	3487961..3488362	+	133	17230355	-	alr2863	-	hypothetical protein
2859	 38.76	0	3488401..3489579	+	392	17230356	-	alr2864	-	hypothetical protein
2860	 32.08	-2	3489602..3490558	+	318	17230357	-	alr2865	-	hypothetical protein
2861	 35.71	-1	3490561..3491400	+	279	17230358	-	alr2866	-	glycosyltransferase
2862	 32.84	-2	3491419..3492636	+	405	17230359	-	alr2867	-	hypothetical protein
2863	 42.24	0	3492815..3493510	-	231	17230360	-	all2868	-	hypothetical protein
2864	 40.00	0	3493544..3494848	-	434	17230361	-	all2869	-	hypothetical protein
2865	 43.72	0	3495168..3497093	-	641	17230362	-	all2870	-	hypothetical protein
2866	 42.32	0	3497404..3498015	-	203	17230363	-	all2871	-	hypothetical protein
2867	 41.74	0	3498494..3498826	+	110	17230364	-	alr2872	-	hypothetical protein
2868	 41.57	0	3498850..3499857	+	335	17230365	-	alr2873	-	hypothetical protein
2869	 44.21	0	3499902..3500894	-	330	17230366	-	all2874	-	two-component response regulator
2870	 43.16	0	3500891..3506344	-	1817	17230367	-	all2875	-	two-component hybrid sensor and regulator
2871	 41.56	0	3507043..3508500	-	485	17230368	-	all2876	-	hypothetical protein
2872	 42.99	0	3509080..3510456	+	458	17230369	cmpA	alr2877	-	bicarbonate transport bicarbonate-binding protein
2873	 39.88	0	3510547..3511386	+	279	17230370	cmpB	alr2878	-	bicarbonate transport permease protein
2874	 48.00	+1	3511460..3513463	+	667	17230371	cmcC	alr2879	-	bicarbonate transport ATP-binding protein
2875	 45.86	0	3513586..3514455	+	289	17230372	cmpD	alr2880	-	bicarbonate transport ATP-binding protein
2876	 40.30	0	3515023..3515970	+	315	17230373	-	alr2881	-	putative lipid kinase
2877	 41.71	0	3516116..3516748	+	210	17230374	exoD	alr2882	-	exopolysaccharide synthesis protein
2878	 45.79	0	3518351..3521746	-	1131	17230375	-	all2883	-	two-component sensor histidine kinase
2879	 33.33	-2	3522618..3522926	+	102	17230376	kaiA	alr2884	-	circadian oscillation regulator
2880	 37.31	-1	3523032..3523358	+	108	17230377	kaiB	alr2885	-	circadian clock protein KaiB
2881	 42.12	0	3523433..3524992	+	519	17230378	kaiC	alr2886	-	circadian clock protein KaiC
2882	 46.12	+1	3525097..3527325	+	742	17230379	-	alr2887	-	hypothetical protein
2883	 44.71	0	3527414..3527791	+	125	17230380	-	alr2888	-	hypothetical protein
2884	 43.59	0	3527929..3528435	+	168	17230381	-	alr2889	-	hypothetical protein
2885	 45.38	0	3528549..3529328	+	259	17230382	-	alr2890	-	hypothetical protein
2886	 39.77	0	3529351..3530127	-	258	17230383	-	all2891	-	hypothetical protein
2887	 42.89	0	3530311..3531807	+	498	17230384	-	alr2892	-	hypothetical protein
2888	 43.49	0	3531948..3532754	-	268	17230385	-	all2893	-	hypothetical protein
2889	 48.77	+1	3532795..3533895	-	366	17230386	ruvB	all2894	-	Holliday junction DNA helicase B
2890	 45.51	0	3534050..3534829	+	259	17230387	hisF	alr2895	-	imidazole glycerol phosphate synthase subunit HisF
2891	 43.23	0	3534929..3535120	+	63	17230388	-	asr2896	-	hypothetical protein
2892	 41.83	0	3535277..3537217	-	646	17230389	-	all2897	-	two-component hybrid sensor and regulator
2893	 37.65	-1	3537220..3537729	-	169	17230390	-	all2898	-	two-component system response regulator
2894	 38.83	0	3537722..3539977	-	751	17230391	aphB	all2899	-	phytochrome-like protein, two-component sensor
2895	 44.85	0	3540525..3541427	-	300	17230392	-	all2900	-	cation efflux system protein
2896	 48.05	+1	3541673..3541903	+	76	17230393	-	asr2901	-	hypothetical protein
2897	 36.01	-1	3542511..3542921	+	136	17230394	hetP	alr2902	-	hypothetical protein
2898	 43.71	0	3543695..3544513	+	272	17230395	-	alr2903	-	hypothetical protein
2899	 43.99	0	3544523..3545695	-	390	17230396	-	all2904	-	hypothetical protein
2900	 36.84	-1	3545757..3546326	-	189	17230397	-	all2905	-	hypothetical protein
2901	 45.52	0	3546463..3547635	-	390	17230398	moeB	all2906	-	hypothetical protein
2902	 39.10	0	3547707..3548105	-	132	17230399	-	all2907	-	hypothetical protein
2903	 47.33	+1	3548200..3550407	-	735	17230400	-	all2908	-	cation transport ATPase
2904	 46.93	+1	3550757..3551374	-	205	17230401	-	all2909	-	hypothetical protein
2905	 42.08	0	3551520..3552251	-	243	17230402	-	all2910	-	carbonate dehydratase
2906	 41.97	0	3552496..3553653	-	385	17230403	-	all2911	-	ABC transport system glutamine-binding protein
2907	 42.88	0	3553788..3554531	-	247	17230404	-	all2912	-	ATP-binding protein of branched-chain amino acid ABC transporter
2908	 38.93	0	3554612..3555397	-	261	17230405	-	all2913	-	hypothetical protein
2909	 43.56	0	3555639..3555863	-	74	17230406	-	asl2914	-	hypothetical protein
2910	 45.35	0	3555925..3557139	-	404	17230407	hisZ	all2915	-	ATP phosphoribosyltransferase regulatory subunit
2911	 41.10	0	3557324..3558289	-	321	17230408	-	all2916	-	hypothetical protein
2912	 46.99	+1	3558515..3559327	-	270	17230409	-	all2917	-	inositol monophophatase family protein
2913	 49.86	+1	3559445..3560152	-	235	17230410	-	all2918	-	hypothetical protein
2914	 46.34	+1	3560142..3560510	-	122	17230411	-	all2919	-	ferredoxin
2915	 40.87	0	3560914..3561351	+	145	17230412	-	alr2920	-	hypothetical protein
2916	 45.00	0	3561840..3562439	+	199	17230413	-	alr2921	-	hypothetical protein
2917	 37.01	-1	3562457..3562864	+	135	17230414	-	alr2922	-	hypothetical protein
2918	 40.82	0	3562970..3563263	-	97	17230415	-	asl2923	-	virulence-associated protein
2919	 36.00	-1	3563275..3563574	-	99	17230416	-	all2924	-	hypothetical protein
2920	 43.69	0	3563809..3564291	+	160	17230417	-	alr2925	-	hypothetical protein
2921	 41.88	0	3564298..3564987	+	229	17230418	-	alr2926	-	hypothetical protein
2922	 42.36	0	3565116..3565514	+	132	17230419	-	alr2927	-	hypothetical protein
2923	 47.12	+1	3565811..3566122	-	103	17230420	rbpB	all2928	-	RNA-binding protein
2924	 43.27	0	3566296..3567090	-	264	17230421	ecaA	all2929	-	carbonic anhydrase
2925	 39.57	0	3567119..3567487	-	122	17230422	-	all2930	-	hypothetical protein
2926	 45.28	0	3567799..3568275	-	158	17230423	-	all2931	-	hypothetical protein
2927	 41.96	0	3568926..3569180	+	84	17230424	-	asr2932	-	hypothetical protein
2928	 44.85	0	3569181..3570413	+	410	17230425	-	alr2933	-	membrane-bound lytic transglycosylase A
2929	 44.68	0	3570447..3571451	-	334	17230426	-	all2934	-	hypothetical protein
2930	 46.24	+1	3572277..3573392	+	371	17230427	-	alr2935	-	hypothetical protein
2931	 46.29	+1	3573576..3575180	+	534	17230428	panC	alr2936	-	bifunctional pantoate ligase/cytidylate kinase
2932	 36.19	-1	3575570..3575779	+	69	17230429	-	asr2937	-	hypothetical protein
2933	 44.44	0	3576003..3576605	+	200	17230430	sodB	alr2938	-	iron superoxide dismutase
2934	 40.10	0	3577154..3577360	+	68	17230431	-	asr2939	-	hypothetical protein
2935	 41.92	0	3577944..3578630	+	228	17230432	-	alr2940	-	hypothetical protein
2936	 40.43	0	3578718..3580436	-	572	17230433	-	all2941	-	hypothetical protein
2937	 35.11	-1	3580468..3580692	-	74	17230434	-	asl2942	-	hypothetical protein
2938	 40.08	0	3580794..3581297	+	167	17230435	-	alr2943	-	hypothetical protein
2939	 38.31	0	3581323..3582045	+	240	17230436	-	alr2944	-	hypothetical protein
2940	 37.59	-1	3582106..3583608	+	500	17230437	-	alr2945	-	bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein
2941	 35.78	-1	3583851..3584954	+	367	17230438	-	alr2946	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.