IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2788	 50.00	+1	3396735..3398780	-	681	17230285	-	all2793	-	hypothetical protein
2789	 28.74	-2	3398883..3399143	-	86	17230286	-	asl2794	-	hypothetical protein
2790	 43.14	0	3399367..3399570	+	67	17230287	-	asr2795	-	hypothetical protein
2791	 38.78	0	3399541..3400953	-	470	17230288	-	all2796	-	hypothetical protein
2792	 37.33	-1	3401012..3401761	-	249	17230289	minD	all2797	-	cell division inhibitor
2793	 35.04	-1	3401784..3402194	-	136	17230290	-	all2798	-	hypothetical protein
2794	 39.67	0	3402354..3403253	-	299	17230291	-	all2799	-	hypothetical protein
2795	 42.73	0	3403546..3407322	+	1258	17230292	-	alr2800	-	WD repeat-containing protein
2796	 43.36	0	3407526..3408413	-	295	17230293	-	all2801	-	hypothetical protein
2797	 41.04	0	3408897..3409337	+	146	17230294	-	alr2802	-	hypothetical protein
2798	 46.19	+1	3409650..3413249	+	1199	17230295	nifJ	alr2803	-	pyruvate-flavodoxin dehydrogenase; nitrogen fixation protein
2799	 32.92	-2	3413292..3413780	-	162	17230296	-	all2804	-	hypothetical protein
2800	 31.22	-2	3413786..3414022	-	78	17230297	-	asl2805	-	hypothetical protein
2801	 46.52	+1	3414155..3416368	-	737	17230298	-	all2806	-	hypothetical protein
2802	 47.96	+1	3416913..3417329	+	138	17230299	-	alr2807	-	hypothetical protein
2803	 42.76	0	3417568..3418416	-	282	17230300	aroE	all2808	-	S-formylglutathione hydrolase
2804	 35.97	-1	3418575..3419219	+	214	17230301	-	alr2809	-	hypothetical protein
2805	 45.32	0	3419284..3420393	-	369	17230302	-	all2810	-	glutathione dependent formaldehyde dehydrogenase
2806	 45.95	0	3420686..3421969	+	427	161353747	avtA	alr2811	-	valine--pyruvate transaminase
2807	 51.82	+2	3421973..3422713	+	246	17230304	rimM	alr2812	-	16S rRNA-processing protein
2808	 41.95	0	3422818..3423525	-	235	17230305	-	all2813	-	transcriptional regulator
2809	 43.78	0	3423572..3424270	+	232	17230306	-	alr2814	-	hypothetical protein
2810	 40.09	0	3424394..3424615	+	73	17230307	-	asr2815	-	hypothetical protein
2811	 45.84	0	3424720..3427134	+	804	17230308	-	alr2816	-	hypothetical protein
2812	 43.76	0	3428064..3431198	+	1044	17230309	hetC	alr2817	-	heterocyst differentiation protein
2813	 37.71	-1	3432364..3432843	+	159	17230310	hetP	alr2818	-	heterocyst differentiation protein
2814	 41.57	0	3433145..3433399	+	84	17230311	-	asr2819	-	hypothetical protein
2815	 38.81	0	3434003..3434641	+	212	17230312	-	alr2820	-	hypothetical protein
2816	 37.19	-1	3434680..3436053	-	457	17230313	-	all2821	-	two-component response regulator
2817	 43.11	0	3436657..3437331	+	224	17230314	-	alr2822	-	hypothetical protein
2818	 46.36	+1	3437542..3438324	+	260	17230315	-	alr2823	-	hypothetical protein
2819	 46.16	+1	3438414..3440612	+	732	17230316	-	alr2824	-	hypothetical protein
2820	 39.41	0	3441147..3441920	+	257	17230317	-	alr2825	-	glucose-1-P cytidylyltransferase
2821	 44.28	0	3442031..3443245	+	404	17230318	-	alr2826	-	hypothetical protein
2822	 41.79	0	3443322..3444350	+	342	17230319	-	alr2827	-	hypothetical protein
2823	 35.70	-1	3444428..3445441	+	337	17230320	-	alr2828	-	hypothetical protein
2824	 37.88	-1	3445449..3446261	+	270	17230321	-	alr2829	-	hypothetical protein
2825	 39.12	0	3446346..3446915	+	189	17230322	rfbC	alr2830	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2826	 47.03	+1	3446985..3448298	+	437	17230323	-	alr2831	-	hypothetical protein
2827	 36.82	-1	3448705..3449793	+	362	17230324	-	alr2832	-	hypothetical protein
2828	 42.14	0	3449820..3452135	+	771	17230325	-	alr2833	-	hypothetical protein
2829	 39.19	0	3452912..3453679	+	255	17230326	-	alr2834	-	hypothetical protein
2830	 39.04	0	3454238..3456061	+	607	17230327	hepA	alr2835	-	ATP-binding protein; heterocyst differentiation protein of ABC transporter
2831	 43.76	0	3456248..3457216	+	322	17230328	-	alr2836	-	glycosyltransferase
2832	 44.21	0	3457336..3458310	+	324	17230329	-	alr2837	-	glycosyltransferase
2833	 41.60	0	3458481..3459266	+	261	17230330	-	alr2838	-	hypothetical protein
2834	 43.63	0	3459432..3460577	+	381	17230331	-	alr2839	-	glycosyltransferase
2835	 47.15	+1	3460577..3461524	+	315	17230332	-	alr2840	-	glycosyltransferase
2836	 41.47	0	3461549..3462973	+	474	17230333	-	alr2841	-	hypothetical protein
2837	 38.67	0	3463133..3463675	-	180	17230334	-	all2842	-	hypothetical protein
2838	 46.55	+1	3463675..3465558	-	627	17230335	-	all2843	-	alkaline phosphatase
2839	 38.24	0	3465686..3465889	-	67	17230336	-	asl2844	-	hypothetical protein
2840	 43.62	0	3465886..3466731	-	281	17230337	-	all2845	-	cation-efflux system membrane protein
2841	 46.52	+1	3467094..3468716	-	540	17230338	guaA	all2846	-	bifunctional GMP synthase/glutamine amidotransferase protein
2842	 43.85	0	3468944..3470056	-	370	17230339	cbiD	all2847	-	cobalt-precorrin-6A synthase
2843	 43.43	0	3470093..3470389	-	98	17230340	-	asl2848	-	hypothetical protein
2844	 40.07	0	3470430..3471023	-	197	17230341	-	all2849	-	hypothetical protein
2845	 47.26	+1	3471344..3471580	-	78	17230342	-	asl2850	-	hypothetical protein
2846	 46.68	+1	3472110..3473330	+	406	17230343	-	alr2851	-	hypothetical protein
2847	 42.92	0	3473424..3474539	-	371	17230344	-	all2852	-	hypothetical protein
2848	 43.92	0	3474859..3475869	-	336	17230345	-	all2853	-	UDP-glucose 4-epimerase
2849	 42.13	0	3475866..3477275	-	469	17230346	-	all2854	-	hypothetical protein
2850	 31.08	-2	3477644..3477865	-	73	17230347	-	asl2855	-	hypothetical protein
2851	 41.84	0	3478542..3480752	+	736	17230348	-	alr2856	-	hypothetical protein
2852	 33.40	-2	3481174..3482637	+	487	17230349	-	alr2857	-	hypothetical protein
2853	 34.90	-1	3482663..3483427	+	254	17230350	-	alr2858	-	hypothetical protein
2854	 29.58	-2	3483557..3484435	+	292	17230351	-	alr2859	-	hypothetical protein
2855	 29.95	-2	3484551..3485792	+	413	17230352	-	alr2860	-	hypothetical protein
2856	 24.38	-2	3485859..3487265	+	468	17230353	-	alr2861	-	hypothetical protein
2857	 34.24	-1	3487308..3487856	+	182	17230354	-	alr2862	-	hypothetical protein
2858	 34.58	-1	3487961..3488362	+	133	17230355	-	alr2863	-	hypothetical protein
2859	 38.76	0	3488401..3489579	+	392	17230356	-	alr2864	-	hypothetical protein
2860	 32.08	-2	3489602..3490558	+	318	17230357	-	alr2865	-	hypothetical protein
2861	 35.71	-1	3490561..3491400	+	279	17230358	-	alr2866	-	glycosyltransferase
2862	 32.84	-2	3491419..3492636	+	405	17230359	-	alr2867	-	hypothetical protein
2863	 42.24	0	3492815..3493510	-	231	17230360	-	all2868	-	hypothetical protein
2864	 40.00	0	3493544..3494848	-	434	17230361	-	all2869	-	hypothetical protein
2865	 43.72	0	3495168..3497093	-	641	17230362	-	all2870	-	hypothetical protein
2866	 42.32	0	3497404..3498015	-	203	17230363	-	all2871	-	hypothetical protein
2867	 41.74	0	3498494..3498826	+	110	17230364	-	alr2872	-	hypothetical protein
2868	 41.57	0	3498850..3499857	+	335	17230365	-	alr2873	-	hypothetical protein
2869	 44.21	0	3499902..3500894	-	330	17230366	-	all2874	-	two-component response regulator
2870	 43.16	0	3500891..3506344	-	1817	17230367	-	all2875	-	two-component hybrid sensor and regulator
2871	 41.56	0	3507043..3508500	-	485	17230368	-	all2876	-	hypothetical protein
2872	 42.99	0	3509080..3510456	+	458	17230369	cmpA	alr2877	-	bicarbonate transport bicarbonate-binding protein
2873	 39.88	0	3510547..3511386	+	279	17230370	cmpB	alr2878	-	bicarbonate transport permease protein
2874	 48.00	+1	3511460..3513463	+	667	17230371	cmcC	alr2879	-	bicarbonate transport ATP-binding protein
2875	 45.86	0	3513586..3514455	+	289	17230372	cmpD	alr2880	-	bicarbonate transport ATP-binding protein
2876	 40.30	0	3515023..3515970	+	315	17230373	-	alr2881	-	putative lipid kinase
2877	 41.71	0	3516116..3516748	+	210	17230374	exoD	alr2882	-	exopolysaccharide synthesis protein
2878	 45.79	0	3518351..3521746	-	1131	17230375	-	all2883	-	two-component sensor histidine kinase
2879	 33.33	-2	3522618..3522926	+	102	17230376	kaiA	alr2884	-	circadian oscillation regulator
2880	 37.31	-1	3523032..3523358	+	108	17230377	kaiB	alr2885	-	circadian clock protein KaiB
2881	 42.12	0	3523433..3524992	+	519	17230378	kaiC	alr2886	-	circadian clock protein KaiC
2882	 46.12	+1	3525097..3527325	+	742	17230379	-	alr2887	-	hypothetical protein
2883	 44.71	0	3527414..3527791	+	125	17230380	-	alr2888	-	hypothetical protein
2884	 43.59	0	3527929..3528435	+	168	17230381	-	alr2889	-	hypothetical protein
2885	 45.38	0	3528549..3529328	+	259	17230382	-	alr2890	-	hypothetical protein
2886	 39.77	0	3529351..3530127	-	258	17230383	-	all2891	-	hypothetical protein
2887	 42.89	0	3530311..3531807	+	498	17230384	-	alr2892	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.