IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2767	 36.25	-1	3369272..3370507	-	411	17230264	-	all2772	-	two-component sensor histidine kinase
2768	 40.18	0	3370821..3371390	+	189	17230265	-	alr2773	-	transposase
2769	 39.18	0	3371420..3371932	+	170	17230266	-	alr2774	-	transposase
2770	 35.60	-1	3372236..3372985	+	249	17230267	-	alr2775	-	hypothetical protein
2771	 41.95	0	3372965..3374125	-	386	17230268	-	all2776	-	hypothetical protein
2772	 47.67	+1	3374343..3374642	-	99	17230269	rbpE	all2777	-	RNA binding protein
2773	 37.35	-1	3374839..3375858	-	339	17230270	-	all2778	-	hypothetical protein
2774	 45.24	0	3375979..3376272	-	97	17230271	-	asl2779	-	hypothetical protein
2775	 48.26	+1	3376722..3379367	+	881	17230272	-	alr2780	-	DNA topoisomerase I
2776	 50.88	+2	3379638..3379808	+	56	17230273	-	asr2781	-	hypothetical protein
2777	 44.82	0	3379826..3380269	+	147	17230274	-	alr2782	-	3-dehydroquinate dehydratase
2778	 40.92	0	3380408..3381343	+	311	17230275	-	alr2783	-	hypothetical protein
2779	 44.15	0	3381496..3384018	+	840	17230276	-	alr2784	-	hypothetical protein
2780	 40.05	0	3384469..3386418	+	649	17230277	-	alr2785	-	hypothetical protein
2781	 39.90	0	3386587..3386784	-	65	17230278	-	asl2786	-	hypothetical protein
2782	 45.62	0	3387128..3389902	-	924	17230279	-	all2787	-	hypothetical protein
2783	 41.27	0	3390032..3390472	-	146	17230280	-	all2788	-	hypothetical protein
2784	 41.80	0	3390535..3390912	-	125	17230281	-	all2789	-	hypothetical protein
2785	 40.05	0	3391177..3391563	+	128	17230282	-	alr2790	-	hypothetical protein
2786	 43.89	0	3391768..3395337	+	1189	17230283	-	alr2791	-	WD repeat-containing protein
2787	 35.85	-1	3395352..3396545	-	397	17230284	-	all2792	-	hypothetical protein
2788	 50.00	+1	3396735..3398780	-	681	17230285	-	all2793	-	hypothetical protein
2789	 28.74	-2	3398883..3399143	-	86	17230286	-	asl2794	-	hypothetical protein
2790	 43.14	0	3399367..3399570	+	67	17230287	-	asr2795	-	hypothetical protein
2791	 38.78	0	3399541..3400953	-	470	17230288	-	all2796	-	hypothetical protein
2792	 37.33	-1	3401012..3401761	-	249	17230289	minD	all2797	-	cell division inhibitor
2793	 35.04	-1	3401784..3402194	-	136	17230290	-	all2798	-	hypothetical protein
2794	 39.67	0	3402354..3403253	-	299	17230291	-	all2799	-	hypothetical protein
2795	 42.73	0	3403546..3407322	+	1258	17230292	-	alr2800	-	WD repeat-containing protein
2796	 43.36	0	3407526..3408413	-	295	17230293	-	all2801	-	hypothetical protein
2797	 41.04	0	3408897..3409337	+	146	17230294	-	alr2802	-	hypothetical protein
2798	 46.19	+1	3409650..3413249	+	1199	17230295	nifJ	alr2803	-	pyruvate-flavodoxin dehydrogenase; nitrogen fixation protein
2799	 32.92	-2	3413292..3413780	-	162	17230296	-	all2804	-	hypothetical protein
2800	 31.22	-2	3413786..3414022	-	78	17230297	-	asl2805	-	hypothetical protein
2801	 46.52	+1	3414155..3416368	-	737	17230298	-	all2806	-	hypothetical protein
2802	 47.96	+1	3416913..3417329	+	138	17230299	-	alr2807	-	hypothetical protein
2803	 42.76	0	3417568..3418416	-	282	17230300	aroE	all2808	-	S-formylglutathione hydrolase
2804	 35.97	-1	3418575..3419219	+	214	17230301	-	alr2809	-	hypothetical protein
2805	 45.32	0	3419284..3420393	-	369	17230302	-	all2810	-	glutathione dependent formaldehyde dehydrogenase
2806	 45.95	0	3420686..3421969	+	427	161353747	avtA	alr2811	-	valine--pyruvate transaminase
2807	 51.82	+2	3421973..3422713	+	246	17230304	rimM	alr2812	-	16S rRNA-processing protein
2808	 41.95	0	3422818..3423525	-	235	17230305	-	all2813	-	transcriptional regulator
2809	 43.78	0	3423572..3424270	+	232	17230306	-	alr2814	-	hypothetical protein
2810	 40.09	0	3424394..3424615	+	73	17230307	-	asr2815	-	hypothetical protein
2811	 45.84	0	3424720..3427134	+	804	17230308	-	alr2816	-	hypothetical protein
2812	 43.76	0	3428064..3431198	+	1044	17230309	hetC	alr2817	-	heterocyst differentiation protein
2813	 37.71	-1	3432364..3432843	+	159	17230310	hetP	alr2818	-	heterocyst differentiation protein
2814	 41.57	0	3433145..3433399	+	84	17230311	-	asr2819	-	hypothetical protein
2815	 38.81	0	3434003..3434641	+	212	17230312	-	alr2820	-	hypothetical protein
2816	 37.19	-1	3434680..3436053	-	457	17230313	-	all2821	-	two-component response regulator
2817	 43.11	0	3436657..3437331	+	224	17230314	-	alr2822	-	hypothetical protein
2818	 46.36	+1	3437542..3438324	+	260	17230315	-	alr2823	-	hypothetical protein
2819	 46.16	+1	3438414..3440612	+	732	17230316	-	alr2824	-	hypothetical protein
2820	 39.41	0	3441147..3441920	+	257	17230317	-	alr2825	-	glucose-1-P cytidylyltransferase
2821	 44.28	0	3442031..3443245	+	404	17230318	-	alr2826	-	hypothetical protein
2822	 41.79	0	3443322..3444350	+	342	17230319	-	alr2827	-	hypothetical protein
2823	 35.70	-1	3444428..3445441	+	337	17230320	-	alr2828	-	hypothetical protein
2824	 37.88	-1	3445449..3446261	+	270	17230321	-	alr2829	-	hypothetical protein
2825	 39.12	0	3446346..3446915	+	189	17230322	rfbC	alr2830	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2826	 47.03	+1	3446985..3448298	+	437	17230323	-	alr2831	-	hypothetical protein
2827	 36.82	-1	3448705..3449793	+	362	17230324	-	alr2832	-	hypothetical protein
2828	 42.14	0	3449820..3452135	+	771	17230325	-	alr2833	-	hypothetical protein
2829	 39.19	0	3452912..3453679	+	255	17230326	-	alr2834	-	hypothetical protein
2830	 39.04	0	3454238..3456061	+	607	17230327	hepA	alr2835	-	ATP-binding protein; heterocyst differentiation protein of ABC transporter
2831	 43.76	0	3456248..3457216	+	322	17230328	-	alr2836	-	glycosyltransferase
2832	 44.21	0	3457336..3458310	+	324	17230329	-	alr2837	-	glycosyltransferase
2833	 41.60	0	3458481..3459266	+	261	17230330	-	alr2838	-	hypothetical protein
2834	 43.63	0	3459432..3460577	+	381	17230331	-	alr2839	-	glycosyltransferase
2835	 47.15	+1	3460577..3461524	+	315	17230332	-	alr2840	-	glycosyltransferase
2836	 41.47	0	3461549..3462973	+	474	17230333	-	alr2841	-	hypothetical protein
2837	 38.67	0	3463133..3463675	-	180	17230334	-	all2842	-	hypothetical protein
2838	 46.55	+1	3463675..3465558	-	627	17230335	-	all2843	-	alkaline phosphatase
2839	 38.24	0	3465686..3465889	-	67	17230336	-	asl2844	-	hypothetical protein
2840	 43.62	0	3465886..3466731	-	281	17230337	-	all2845	-	cation-efflux system membrane protein
2841	 46.52	+1	3467094..3468716	-	540	17230338	guaA	all2846	-	bifunctional GMP synthase/glutamine amidotransferase protein
2842	 43.85	0	3468944..3470056	-	370	17230339	cbiD	all2847	-	cobalt-precorrin-6A synthase
2843	 43.43	0	3470093..3470389	-	98	17230340	-	asl2848	-	hypothetical protein
2844	 40.07	0	3470430..3471023	-	197	17230341	-	all2849	-	hypothetical protein
2845	 47.26	+1	3471344..3471580	-	78	17230342	-	asl2850	-	hypothetical protein
2846	 46.68	+1	3472110..3473330	+	406	17230343	-	alr2851	-	hypothetical protein
2847	 42.92	0	3473424..3474539	-	371	17230344	-	all2852	-	hypothetical protein
2848	 43.92	0	3474859..3475869	-	336	17230345	-	all2853	-	UDP-glucose 4-epimerase
2849	 42.13	0	3475866..3477275	-	469	17230346	-	all2854	-	hypothetical protein
2850	 31.08	-2	3477644..3477865	-	73	17230347	-	asl2855	-	hypothetical protein
2851	 41.84	0	3478542..3480752	+	736	17230348	-	alr2856	-	hypothetical protein
2852	 33.40	-2	3481174..3482637	+	487	17230349	-	alr2857	-	hypothetical protein
2853	 34.90	-1	3482663..3483427	+	254	17230350	-	alr2858	-	hypothetical protein
2854	 29.58	-2	3483557..3484435	+	292	17230351	-	alr2859	-	hypothetical protein
2855	 29.95	-2	3484551..3485792	+	413	17230352	-	alr2860	-	hypothetical protein
2856	 24.38	-2	3485859..3487265	+	468	17230353	-	alr2861	-	hypothetical protein
2857	 34.24	-1	3487308..3487856	+	182	17230354	-	alr2862	-	hypothetical protein
2858	 34.58	-1	3487961..3488362	+	133	17230355	-	alr2863	-	hypothetical protein
2859	 38.76	0	3488401..3489579	+	392	17230356	-	alr2864	-	hypothetical protein
2860	 32.08	-2	3489602..3490558	+	318	17230357	-	alr2865	-	hypothetical protein
2861	 35.71	-1	3490561..3491400	+	279	17230358	-	alr2866	-	glycosyltransferase
2862	 32.84	-2	3491419..3492636	+	405	17230359	-	alr2867	-	hypothetical protein
2863	 42.24	0	3492815..3493510	-	231	17230360	-	all2868	-	hypothetical protein
2864	 40.00	0	3493544..3494848	-	434	17230361	-	all2869	-	hypothetical protein
2865	 43.72	0	3495168..3497093	-	641	17230362	-	all2870	-	hypothetical protein
2866	 42.32	0	3497404..3498015	-	203	17230363	-	all2871	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.