IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2296	 40.74	0	2771000..2771053	-	17	17229793	patS	asl2301	-	heterocyst-inhibiting signaling peptide
2297	 39.98	0	2771978..2773150	-	390	17229794	-	all2302	-	patatin-like protein
2298	 47.73	+1	2773257..2774576	-	439	17229795	-	all2303	-	dihydroorotase
2299	 42.28	0	2774802..2775449	+	215	17229796	-	alr2304	-	signal peptidase I
2300	 41.00	0	2775558..2776340	+	260	17229797	-	alr2305	-	hypothetical protein
2301	 35.78	-1	2777197..2779032	+	611	17229798	-	alr2306	-	two-component response regulator
2302	 39.28	0	2779215..2780627	+	470	17229799	-	alr2307	-	two-component hybrid sensor and regulator
2303	 48.36	+1	2780723..2782000	+	425	17229800	-	alr2308	-	hypothetical protein
2304	 47.87	+1	2782040..2783779	+	579	17229801	-	alr2309	-	hypothetical protein
2305	 40.54	0	2783871..2784911	+	346	17229802	-	alr2310	-	hypothetical protein
2306	 50.31	+2	2785331..2785648	+	105	17229803	rbpF	alr2311	-	RNA-binding protein
2307	 44.03	0	2785825..2787273	+	482	17229804	-	alr2312	-	hypothetical protein
2308	 46.20	+1	2787729..2788544	+	271	17229805	-	alr2313	-	hypothetical protein
2309	 38.30	0	2788835..2789680	-	281	17229806	-	all2314	-	hypothetical protein
2310	 43.37	0	2789748..2790743	-	331	17229807	-	all2315	-	ketol-acid reductoisomerase
2311	 44.09	0	2790870..2791724	-	284	17229808	-	all2316	-	aldo/keto reductase
2312	 41.04	0	2791904..2792344	-	146	17229809	-	all2317	-	hypothetical protein
2313	 43.14	0	2792489..2793283	-	264	17229810	-	all2318	-	hypothetical protein
2314	 42.77	0	2793490..2793828	-	112	17229811	glnB	all2319	-	nitrogen regulatory protein P-II
2315	 44.11	0	2794221..2794814	-	197	17229812	-	all2320	-	hypothetical protein
2316	 43.38	0	2795099..2795536	+	145	17229813	-	alr2321	-	lactoylglutathione lyase
2317	 45.37	0	2796127..2798769	+	880	17229814	clpB	alr2322	-	endopeptidase Clp ATP-binding chain
2318	 43.65	0	2799039..2801015	+	658	17229815	-	alr2323	-	heat shock protein 90
2319	 41.96	0	2801432..2802625	+	397	17229816	-	alr2324	-	hypothetical protein
2320	 36.84	-1	2803092..2803775	+	227	17229817	-	alr2325	-	transcriptional regulator
2321	 42.16	0	2804495..2806126	+	543	17229818	-	alr2326	-	hypothetical protein
2322	 46.08	0	2806614..2807123	-	169	17229819	apcF	all2327	-	phycobilisome core component
2323	 44.35	0	2807483..2808907	+	474	17229820	glnA	alr2328	-	glutamate--ammonia ligase
2324	 45.59	0	2809070..2809273	-	67	17229821	-	asl2329	-	hypothetical protein
2325	 37.40	-1	2809455..2809700	+	81	17229822	-	asr2330	-	hypothetical protein
2326	 43.99	0	2809813..2810469	+	218	17229823	-	alr2331	-	hypothetical protein
2327	 39.74	0	2810950..2811183	-	77	17229824	-	asl2332	-	hypothetical protein
2328	 44.85	0	2811269..2813056	-	595	17229825	-	all2333	-	hypothetical protein
2329	 42.89	0	2813555..2815009	-	484	17229826	-	all2334	-	serine/threonine kinase
2330	 44.85	0	2815238..2816296	+	352	17229827	-	alr2335	-	sorbitol dehydrogenase
2331	 45.88	0	2816367..2817665	+	432	17229828	-	alr2336	-	phosphate permease
2332	 35.15	-1	2817911..2818075	-	54	17229829	-	asl2337	-	hypothetical protein
2333	 44.41	0	2818434..2820689	+	751	17229830	-	alr2338	-	hypothetical protein
2334	 48.56	+1	2821638..2822537	+	299	17229831	hetR	alr2339	-	heterocyst differentiation control protein
2335	 43.95	0	2822818..2824032	-	404	17229832	-	all2340	-	succinyldiaminopimelate transaminase
2336	 40.80	0	2824122..2824469	-	115	17229833	-	all2341	-	thioredoxin 2
2337	 46.07	0	2824625..2825401	-	258	17229834	-	all2342	-	hypothetical protein
2338	 44.24	0	2825564..2826388	-	274	17229835	-	all2343	-	hypothetical protein
2339	 45.68	0	2826515..2827834	-	439	17229836	-	all2344	-	hypothetical protein
2340	 43.91	0	2828054..2828611	+	185	17229837	-	alr2345	-	hypothetical protein
2341	 46.35	+1	2828984..2829298	+	104	17229838	-	alr2346	-	hypothetical protein
2342	 44.24	0	2829448..2830281	-	277	17229839	-	all2347	-	naphthoate synthase
2343	 45.70	0	2830408..2830593	+	61	17229840	-	asr2348	-	hypothetical protein
2344	 41.68	0	2830757..2832373	-	538	17229841	-	all2349	-	hypothetical protein
2345	 44.16	0	2832938..2833879	+	313	17229842	-	alr2350	-	phosphoribulokinase
2346	 46.04	0	2834049..2834780	+	243	17229843	radC	alr2351	-	DNA repair protein RadC
2347	 43.30	0	2834830..2835903	-	357	17229844	-	all2352	-	WD-40 repeat-containing protein
2348	 46.13	+1	2835984..2836280	-	98	17229845	-	asl2353	-	hypothetical protein
2349	 43.86	0	2836673..2836843	-	56	17229846	-	asl2354	-	CAB/ELIP/HLIP-related protein
2350	 44.69	0	2837152..2838243	+	363	17229847	-	alr2355	-	alanine dehydrogenase
2351	 45.28	0	2838333..2839127	-	264	17229848	phnE	all2356	-	phosphonate ABC transport permease protein
2352	 45.44	0	2839174..2839908	-	244	17229849	-	all2357	-	phosphonate ABC transport ATP-binding component
2353	 43.93	0	2840038..2841018	-	326	17229850	-	all2358	-	phosphonate ABC transport phosphonate binding component
2354	 48.77	+1	2841443..2841850	+	135	17229851	-	alr2359	-	hypothetical protein
2355	 36.36	-1	2842076..2842273	-	65	17229852	-	asl2360	-	hypothetical protein
2356	 46.18	+1	2842854..2845382	+	842	17229853	-	alr2361	-	mannose-1-phosphate guanyltransferase
2357	 46.58	+1	2845634..2845867	-	77	17229854	nlpD	asl2362	-	lipoprotein
2358	 40.06	0	2847122..2848534	+	470	17229855	-	alr2363	-	hypothetical protein
2359	 48.79	+1	2848747..2849697	-	316	17229856	accD	all2364	-	acetyl-CoA carboxylase subunit beta
2360	 36.31	-1	2850349..2850516	+	55	17229857	-	asr2365	-	hypothetical protein
2361	 33.89	-1	2850560..2850916	+	118	17229858	-	alr2366	-	hypothetical protein
2362	 39.76	0	2851152..2851478	-	108	17229859	-	all2367	-	thioredoxin
2363	 43.22	0	2851802..2852236	-	144	17229860	infC	all2368	-	translation initiation factor IF-3
2364	 32.23	-2	2852529..2852801	+	90	17229861	-	asr2369	-	hypothetical protein
2365	 42.19	0	2853122..2853313	-	63	17229862	-	asl2370	-	hypothetical protein
2366	 30.68	-2	2853441..2853854	-	137	17229863	-	all2371	-	hypothetical protein
2367	 46.76	+1	2854465..2855484	+	339	17229864	-	alr2372	-	ABC transporter ATP-binding protein
2368	 46.73	+1	2855600..2856487	+	295	17229865	-	alr2373	-	hypothetical protein
2369	 42.56	0	2856532..2856921	+	129	17229866	-	alr2374	-	hypothetical protein
2370	 44.06	0	2856989..2857426	-	145	17229867	-	all2375	-	hypothetical protein
2371	 44.94	0	2857583..2857987	+	134	17229868	-	alr2376	-	hypothetical protein
2372	 46.15	+1	2858433..2859914	+	493	17229869	-	alr2377	-	cobyric acid synthase
2373	 47.08	+1	2859930..2860169	+	79	17229870	-	asr2378	-	hypothetical protein
2374	 44.71	0	2860351..2864385	-	1344	17229871	-	all2379	-	two-component hybrid sensor and regulator
2375	 38.69	0	2864712..2864879	-	55	17229872	-	asl2380	-	hypothetical protein
2376	 41.67	0	2865389..2865844	-	151	17229873	-	all2381	-	hypothetical protein
2377	 44.51	0	2865888..2867327	-	479	17229874	crtQ	all2382	-	zeta-carotene desaturase
2378	 38.42	0	2867622..2867798	-	58	17229875	-	asl2383	-	hypothetical protein
2379	 44.49	0	2870021..2871661	-	546	17229876	-	all2384	-	hypothetical protein
2380	 44.54	0	2871965..2872321	+	118	17229877	-	alr2385	-	hypothetical protein
2381	 43.03	0	2872400..2872822	+	140	17229878	-	alr2386	-	hypothetical protein
2382	 38.21	0	2872925..2873170	+	81	17229879	-	asr2387	-	hypothetical protein
2383	 37.29	-1	2873192..2873368	+	58	17229880	-	asr2388	-	hypothetical protein
2384	 40.44	0	2873365..2873547	+	60	17229881	-	asr2389	-	hypothetical protein
2385	 43.65	0	2873558..2874478	-	306	17229882	-	all2390	-	cell division inhibitor
2386	 45.29	0	2874586..2875722	-	378	17229883	-	all2391	-	hypothetical protein
2387	 33.70	-2	2875995..2876534	+	179	17229884	fraC	alr2392	-	filament integrity protein
2388	 37.50	-1	2876582..2877613	+	343	17229885	-	alr2393	-	hypothetical protein
2389	 38.81	0	2877610..2878413	+	267	17229886	-	alr2394	-	hypothetical protein
2390	 39.01	0	2878415..2879083	-	222	17229887	-	all2395	-	hypothetical protein
2391	 37.51	-1	2879350..2880714	-	454	17229888	-	all2396	-	hypothetical protein
2392	 33.93	-1	2880876..2881043	-	55	17229889	-	asl2397	-	hypothetical protein
2393	 47.15	+1	2881109..2882404	+	431	17229890	-	alr2398	-	4-aminobutyrate aminotransferase
2394	 41.24	0	2882454..2883212	-	252	17229891	-	all2399	-	hypothetical protein
2395	 44.13	0	2883331..2883543	-	70	17229892	-	asl2400	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.