IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2251	 39.74	0	2708165..2709412	+	415	17229748	-	alr2256	-	hypothetical protein
2252	 40.67	0	2709454..2711865	+	803	17229749	-	alr2257	-	hypothetical protein
2253	 33.39	-2	2712073..2717406	+	1777	17229750	hstK	alr2258	-	serine/threonine kinase protein
2254	 38.82	0	2717732..2719117	+	461	17229751	pknB	alr2259	-	serine/threonine kinase
2255	 37.43	-1	2719487..2720389	-	300	17229752	-	all2260	-	hypothetical protein
2256	 39.57	0	2720748..2721356	+	202	17229753	-	alr2261	-	hypothetical protein
2257	 44.99	0	2721609..2722037	-	142	17229754	-	all2262	-	hypothetical protein
2258	 45.52	0	2722089..2722958	-	289	17229755	-	all2263	-	heat shock protein X
2259	 42.16	0	2723405..2725036	+	543	17229756	-	alr2264	-	Na+/H+-exchanging protein
2260	 45.12	0	2725143..2726279	+	378	17229757	sqdX	alr2265	-	sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein
2261	 40.19	0	2726406..2728985	+	859	17229758	cyaB1	alr2266	-	adenylate cyclase
2262	 36.86	-1	2729102..2729413	-	103	17229759	-	all2267	-	hypothetical protein
2263	 42.95	0	2730420..2731157	+	245	17229760	purC	alr2268	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2264	 48.16	+1	2731307..2733808	+	833	17229761	-	alr2269	-	hypothetical protein
2265	 46.38	+1	2733901..2734743	+	280	17229762	lpxC	alr2270	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2266	 44.19	0	2734820..2735335	+	171	17229763	fabZ	alr2271	-	(3R)-hydroxymyristoyl-ACP dehydratase
2267	 47.04	+1	2735644..2736402	+	252	17229764	-	alr2272	-	UDP-N-acetylglucosamine acyltransferase
2268	 58.50	+2	2736392..2736538	+	48	17229765	-	asr2273	-	hypothetical protein
2269	 44.59	0	2736581..2737735	+	384	17229766	lpxB	alr2274	-	lipid-A-disaccharide synthase
2270	 42.05	0	2738046..2738630	-	194	17229767	-	all2275	-	hypothetical protein
2271	 43.52	0	2738971..2740266	+	431	17229768	-	alr2276	-	site-specific DNA-methyltransferase
2272	 45.15	0	2740349..2741194	-	281	17229769	-	all2277	-	hypothetical protein
2273	 43.86	0	2741688..2742257	+	189	17229770	-	alr2278	-	hypothetical protein
2274	 43.05	0	2742247..2746146	+	1299	17229771	-	alr2279	-	two-component hybrid sensor and regulator
2275	 39.89	0	2746186..2747451	+	421	17229772	-	alr2280	-	two-component response regulator
2276	 32.05	-2	2747530..2748228	-	232	17229773	-	all2281	-	two-component response regulator
2277	 33.52	-2	2748221..2753572	-	1783	17229774	-	all2282	-	serine/threonine kinase protein
2278	 32.42	-2	2753815..2754144	-	109	17229775	-	all2283	-	anti-sigma factor antagonist
2279	 38.55	0	2754279..2754776	-	165	17229776	rsbW	all2284	-	sigma-B activity negative regulator
2280	 40.52	0	2754777..2755778	-	333	17229777	-	all2285	-	glucosyltransferase
2281	 40.98	0	2755775..2756284	-	169	17229778	-	all2286	-	glucosyltransferase
2282	 39.25	0	2756281..2756736	-	151	17229779	-	all2287	-	glucosyltransferase
2283	 43.22	0	2756810..2757841	-	343	17229780	-	all2288	-	glucosyltransferase
2284	 44.04	0	2757927..2758916	-	329	17229781	-	all2289	-	glucosyltransferase
2285	 43.97	0	2758913..2760190	-	425	17229782	-	all2290	-	hypothetical protein
2286	 47.21	+1	2760187..2761173	-	328	17229783	-	all2291	-	glycosyltransferase
2287	 45.97	0	2761170..2762348	-	392	17229784	-	all2292	-	hypothetical protein
2288	 44.81	0	2762423..2763520	-	365	17229785	-	all2293	-	hypothetical protein
2289	 46.06	0	2763872..2764900	+	342	17229786	-	alr2294	-	hypothetical protein
2290	 41.06	0	2764897..2766294	+	465	17229787	-	alr2295	-	hypothetical protein
2291	 40.98	0	2766360..2767640	+	426	17229788	-	alr2296	-	hypothetical protein
2292	 42.48	0	2767670..2768161	-	163	17229789	ruvC	all2297	-	Holliday junction resolvase
2293	 46.39	+1	2768333..2769703	+	456	17229790	-	alr2298	-	hypothetical protein
2294	 31.11	-2	2769896..2770120	-	74	17229791	-	asl2299	-	hypothetical protein
2295	 38.45	0	2770300..2770788	+	162	17229792	-	alr2300	-	hypothetical protein
2296	 40.74	0	2771000..2771053	-	17	17229793	patS	asl2301	-	heterocyst-inhibiting signaling peptide
2297	 39.98	0	2771978..2773150	-	390	17229794	-	all2302	-	patatin-like protein
2298	 47.73	+1	2773257..2774576	-	439	17229795	-	all2303	-	dihydroorotase
2299	 42.28	0	2774802..2775449	+	215	17229796	-	alr2304	-	signal peptidase I
2300	 41.00	0	2775558..2776340	+	260	17229797	-	alr2305	-	hypothetical protein
2301	 35.78	-1	2777197..2779032	+	611	17229798	-	alr2306	-	two-component response regulator
2302	 39.28	0	2779215..2780627	+	470	17229799	-	alr2307	-	two-component hybrid sensor and regulator
2303	 48.36	+1	2780723..2782000	+	425	17229800	-	alr2308	-	hypothetical protein
2304	 47.87	+1	2782040..2783779	+	579	17229801	-	alr2309	-	hypothetical protein
2305	 40.54	0	2783871..2784911	+	346	17229802	-	alr2310	-	hypothetical protein
2306	 50.31	+2	2785331..2785648	+	105	17229803	rbpF	alr2311	-	RNA-binding protein
2307	 44.03	0	2785825..2787273	+	482	17229804	-	alr2312	-	hypothetical protein
2308	 46.20	+1	2787729..2788544	+	271	17229805	-	alr2313	-	hypothetical protein
2309	 38.30	0	2788835..2789680	-	281	17229806	-	all2314	-	hypothetical protein
2310	 43.37	0	2789748..2790743	-	331	17229807	-	all2315	-	ketol-acid reductoisomerase
2311	 44.09	0	2790870..2791724	-	284	17229808	-	all2316	-	aldo/keto reductase
2312	 41.04	0	2791904..2792344	-	146	17229809	-	all2317	-	hypothetical protein
2313	 43.14	0	2792489..2793283	-	264	17229810	-	all2318	-	hypothetical protein
2314	 42.77	0	2793490..2793828	-	112	17229811	glnB	all2319	-	nitrogen regulatory protein P-II
2315	 44.11	0	2794221..2794814	-	197	17229812	-	all2320	-	hypothetical protein
2316	 43.38	0	2795099..2795536	+	145	17229813	-	alr2321	-	lactoylglutathione lyase
2317	 45.37	0	2796127..2798769	+	880	17229814	clpB	alr2322	-	endopeptidase Clp ATP-binding chain
2318	 43.65	0	2799039..2801015	+	658	17229815	-	alr2323	-	heat shock protein 90
2319	 41.96	0	2801432..2802625	+	397	17229816	-	alr2324	-	hypothetical protein
2320	 36.84	-1	2803092..2803775	+	227	17229817	-	alr2325	-	transcriptional regulator
2321	 42.16	0	2804495..2806126	+	543	17229818	-	alr2326	-	hypothetical protein
2322	 46.08	0	2806614..2807123	-	169	17229819	apcF	all2327	-	phycobilisome core component
2323	 44.35	0	2807483..2808907	+	474	17229820	glnA	alr2328	-	glutamate--ammonia ligase
2324	 45.59	0	2809070..2809273	-	67	17229821	-	asl2329	-	hypothetical protein
2325	 37.40	-1	2809455..2809700	+	81	17229822	-	asr2330	-	hypothetical protein
2326	 43.99	0	2809813..2810469	+	218	17229823	-	alr2331	-	hypothetical protein
2327	 39.74	0	2810950..2811183	-	77	17229824	-	asl2332	-	hypothetical protein
2328	 44.85	0	2811269..2813056	-	595	17229825	-	all2333	-	hypothetical protein
2329	 42.89	0	2813555..2815009	-	484	17229826	-	all2334	-	serine/threonine kinase
2330	 44.85	0	2815238..2816296	+	352	17229827	-	alr2335	-	sorbitol dehydrogenase
2331	 45.88	0	2816367..2817665	+	432	17229828	-	alr2336	-	phosphate permease
2332	 35.15	-1	2817911..2818075	-	54	17229829	-	asl2337	-	hypothetical protein
2333	 44.41	0	2818434..2820689	+	751	17229830	-	alr2338	-	hypothetical protein
2334	 48.56	+1	2821638..2822537	+	299	17229831	hetR	alr2339	-	heterocyst differentiation control protein
2335	 43.95	0	2822818..2824032	-	404	17229832	-	all2340	-	succinyldiaminopimelate transaminase
2336	 40.80	0	2824122..2824469	-	115	17229833	-	all2341	-	thioredoxin 2
2337	 46.07	0	2824625..2825401	-	258	17229834	-	all2342	-	hypothetical protein
2338	 44.24	0	2825564..2826388	-	274	17229835	-	all2343	-	hypothetical protein
2339	 45.68	0	2826515..2827834	-	439	17229836	-	all2344	-	hypothetical protein
2340	 43.91	0	2828054..2828611	+	185	17229837	-	alr2345	-	hypothetical protein
2341	 46.35	+1	2828984..2829298	+	104	17229838	-	alr2346	-	hypothetical protein
2342	 44.24	0	2829448..2830281	-	277	17229839	-	all2347	-	naphthoate synthase
2343	 45.70	0	2830408..2830593	+	61	17229840	-	asr2348	-	hypothetical protein
2344	 41.68	0	2830757..2832373	-	538	17229841	-	all2349	-	hypothetical protein
2345	 44.16	0	2832938..2833879	+	313	17229842	-	alr2350	-	phosphoribulokinase
2346	 46.04	0	2834049..2834780	+	243	17229843	radC	alr2351	-	DNA repair protein RadC
2347	 43.30	0	2834830..2835903	-	357	17229844	-	all2352	-	WD-40 repeat-containing protein
2348	 46.13	+1	2835984..2836280	-	98	17229845	-	asl2353	-	hypothetical protein
2349	 43.86	0	2836673..2836843	-	56	17229846	-	asl2354	-	CAB/ELIP/HLIP-related protein
2350	 44.69	0	2837152..2838243	+	363	17229847	-	alr2355	-	alanine dehydrogenase
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.