IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2184	 36.16	-1	2631203..2632228	+	341	17229681	-	alr2189	-	regulatory protein
2185	 41.51	0	2632724..2634202	+	492	17229682	-	alr2190	-	cytoplasmic alpha-amylase
2186	 45.64	0	2634316..2635233	+	305	17229683	-	alr2191	-	hypothetical protein
2187	 43.55	0	2635534..2636316	-	260	17229684	-	all2192	-	hypothetical protein
2188	 44.39	0	2636309..2636914	-	201	17229685	-	all2193	-	RNA polymerase sigma factor
2189	 38.62	0	2637113..2637358	-	81	17229686	-	asl2194	-	hypothetical protein
2190	 43.73	0	2637339..2637617	-	92	17229687	-	asl2195	-	hypothetical protein
2191	 45.86	0	2637832..2638230	-	132	17229688	-	all2196	-	hypothetical protein
2192	 50.21	+1	2638217..2638453	-	78	17229689	-	asl2197	-	hypothetical protein
2193	 39.65	0	2638538..2639218	-	226	17229690	-	all2198	-	hypothetical protein
2194	 34.41	-1	2639516..2639794	-	92	17229691	-	asl2199	-	hypothetical protein
2195	 39.39	0	2640422..2640982	-	186	17229692	-	all2200	-	hypothetical protein
2196	 41.28	0	2641726..2642241	+	171	17229693	-	alr2201	-	hypothetical protein
2197	 40.00	0	2642444..2642968	+	174	17229694	-	alr2202	-	hypothetical protein
2198	 45.66	0	2643001..2643852	+	283	17229695	-	alr2203	-	hypothetical protein
2199	 47.92	+1	2643855..2644841	+	328	17229696	-	alr2204	-	thioredoxin reductase
2200	 39.77	0	2644877..2645218	+	113	17229697	-	alr2205	-	thioredoxin
2201	 44.29	0	2645313..2645531	+	72	17229698	-	asr2206	-	hypothetical protein
2202	 42.40	0	2645595..2646443	+	282	17229699	-	alr2207	-	hypothetical protein
2203	 33.63	-2	2646871..2647866	+	331	17229700	-	alr2208	-	transcriptional regulator
2204	 40.35	0	2648025..2650673	+	882	17229701	-	alr2209	-	ferric aerobactin receptor
2205	 37.76	-1	2650904..2651896	+	330	17229702	-	alr2210	-	iron(III) dicitrate-binding periplasmic protein of ABC transporter
2206	 39.73	0	2652134..2654698	+	854	17229703	-	alr2211	-	ferrichrome-iron receptor
2207	 28.85	-2	2654776..2655756	+	326	17229704	-	alr2212	-	iron(III) dicitrate-binding periplasmic protein of ABC transporter
2208	 33.64	-2	2655775..2656752	+	325	17229705	-	alr2213	-	iron(III) dicitrate-binding periplasmic protein of ABC transporter
2209	 37.32	-1	2656752..2657630	+	292	17229706	-	alr2214	-	hypothetical protein
2210	 40.60	0	2657732..2659039	+	435	17229707	-	alr2215	-	hypothetical protein
2211	 43.18	0	2659385..2660521	-	378	17229708	phnM	all2216	-	phosphonate metabolism protein
2212	 39.94	0	2660694..2661419	-	241	17229709	phnL	all2217	-	phosphonate ABC transporter, ATP-binding component
2213	 46.90	+1	2661543..2662316	-	257	17229710	phnK	all2218	-	phosphonates transport ATP-binding protein
2214	 46.02	0	2662530..2663396	-	288	17229711	phnJ	all2219	-	phosphonate metabolism protein
2215	 43.85	0	2663492..2664052	-	186	17229712	-	all2220	-	hypothetical protein
2216	 41.05	0	2664152..2665654	-	500	17229713	phnM	all2221	-	phosphonate metabolism protein
2217	 44.79	0	2665886..2667133	-	415	17229714	phnI	all2222	-	phosphonate metabolism protein
2218	 42.64	0	2667169..2667630	-	153	17229715	-	all2223	-	hypothetical protein
2219	 45.50	0	2667620..2668219	-	199	17229716	phnH	all2224	-	phosphonate metabolism protein
2220	 45.39	0	2668286..2668741	-	151	17229717	phnG	all2225	-	phosphonate metabolism protein
2221	 42.24	0	2669096..2669836	+	246	17229718	-	alr2226	-	transcriptional regulator
2222	 40.00	0	2670248..2671072	-	274	17229719	phnE	all2227	-	phosphonate ABC tranporter permease protein
2223	 36.43	-1	2671097..2672098	-	333	17229720	phnD	all2228	-	ABC tranporter, phosphate-binding protein
2224	 38.18	0	2672178..2673188	-	336	17229721	-	all2229	-	ABC tranporter, phosphate-binding protein
2225	 42.11	0	2673286..2674083	-	265	17229722	phnC	all2230	-	ABC tranporter, ATP-binding component
2226	 41.62	0	2674674..2676362	+	562	17229723	-	alr2231	-	hypothetical protein
2227	 43.80	0	2676427..2676837	-	136	17229724	-	all2232	-	hypothetical protein
2228	 36.17	-1	2677471..2677998	+	175	17229725	-	alr2233	-	hypothetical protein
2229	 45.39	0	2678618..2680210	+	530	17229726	phoD	alr2234	-	phosphodiesterase/alkaline phosphatase D
2230	 33.33	-2	2680443..2681402	-	319	17229727	fecC	all2235	-	iron(III) dicitrate ABC transporter permease protein
2231	 40.12	0	2681541..2684117	-	858	17229728	-	all2236	-	ferrichrome-iron receptor
2232	 36.80	-1	2684304..2685314	-	336	17229729	-	all2237	-	transcriptional regulator
2233	 41.49	0	2685432..2686154	-	240	17229730	-	all2238	-	hypothetical protein
2234	 42.06	0	2686257..2691380	-	1707	17229731	-	all2239	-	two-component hybrid sensor and regulator
2235	 31.30	-2	2691633..2692223	+	196	17229732	-	alr2240	-	two-component response regulator
2236	 40.65	0	2692248..2693381	+	377	17229733	-	alr2241	-	two-component hybrid sensor and regulator
2237	 33.25	-2	2693858..2696203	+	781	17229734	-	alr2242	-	hypothetical protein
2238	 46.42	+1	2696512..2698353	-	613	17229735	-	all2243	-	hypothetical protein
2239	 37.84	-1	2698396..2700303	-	635	17229736	-	all2244	-	hypothetical protein
2240	 36.70	-1	2700341..2701024	-	227	17229737	-	all2245	-	hypothetical protein
2241	 33.33	-2	2701151..2701492	+	113	17229738	-	alr2246	-	hypothetical protein
2242	 33.33	-2	2701618..2701995	-	125	17229739	gvpG	all2247	-	gas vesicle protein
2243	 36.46	-1	2702009..2702743	-	244	17229740	gvpF	all2248	-	gas vesicle protein
2244	 39.53	0	2702841..2703308	-	155	17229741	gvpK	all2249	-	gas vesicle protein
2245	 40.49	0	2703434..2703880	-	148	17229742	gvpJ	all2250	-	gas vesicle protein
2246	 41.69	0	2703877..2705109	-	410	17229743	gvpN	all2251	-	gas vesicle protein
2247	 41.79	0	2705536..2705925	-	129	17229744	gvpC	all2252	-	gas vesicle protein
2248	 42.59	0	2706132..2706347	-	71	17229745	gvpB	asl2253	-	gas vesicle synthesis protein GvpA
2249	 41.67	0	2706452..2706667	-	71	17229746	gvpA	asl2254	-	gas vesicle synthesis protein GvpA
2250	 41.20	0	2707132..2707398	+	88	17229747	-	asr2255	-	hypothetical protein
2251	 39.74	0	2708165..2709412	+	415	17229748	-	alr2256	-	hypothetical protein
2252	 40.67	0	2709454..2711865	+	803	17229749	-	alr2257	-	hypothetical protein
2253	 33.39	-2	2712073..2717406	+	1777	17229750	hstK	alr2258	-	serine/threonine kinase protein
2254	 38.82	0	2717732..2719117	+	461	17229751	pknB	alr2259	-	serine/threonine kinase
2255	 37.43	-1	2719487..2720389	-	300	17229752	-	all2260	-	hypothetical protein
2256	 39.57	0	2720748..2721356	+	202	17229753	-	alr2261	-	hypothetical protein
2257	 44.99	0	2721609..2722037	-	142	17229754	-	all2262	-	hypothetical protein
2258	 45.52	0	2722089..2722958	-	289	17229755	-	all2263	-	heat shock protein X
2259	 42.16	0	2723405..2725036	+	543	17229756	-	alr2264	-	Na+/H+-exchanging protein
2260	 45.12	0	2725143..2726279	+	378	17229757	sqdX	alr2265	-	sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein
2261	 40.19	0	2726406..2728985	+	859	17229758	cyaB1	alr2266	-	adenylate cyclase
2262	 36.86	-1	2729102..2729413	-	103	17229759	-	all2267	-	hypothetical protein
2263	 42.95	0	2730420..2731157	+	245	17229760	purC	alr2268	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2264	 48.16	+1	2731307..2733808	+	833	17229761	-	alr2269	-	hypothetical protein
2265	 46.38	+1	2733901..2734743	+	280	17229762	lpxC	alr2270	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2266	 44.19	0	2734820..2735335	+	171	17229763	fabZ	alr2271	-	(3R)-hydroxymyristoyl-ACP dehydratase
2267	 47.04	+1	2735644..2736402	+	252	17229764	-	alr2272	-	UDP-N-acetylglucosamine acyltransferase
2268	 58.50	+2	2736392..2736538	+	48	17229765	-	asr2273	-	hypothetical protein
2269	 44.59	0	2736581..2737735	+	384	17229766	lpxB	alr2274	-	lipid-A-disaccharide synthase
2270	 42.05	0	2738046..2738630	-	194	17229767	-	all2275	-	hypothetical protein
2271	 43.52	0	2738971..2740266	+	431	17229768	-	alr2276	-	site-specific DNA-methyltransferase
2272	 45.15	0	2740349..2741194	-	281	17229769	-	all2277	-	hypothetical protein
2273	 43.86	0	2741688..2742257	+	189	17229770	-	alr2278	-	hypothetical protein
2274	 43.05	0	2742247..2746146	+	1299	17229771	-	alr2279	-	two-component hybrid sensor and regulator
2275	 39.89	0	2746186..2747451	+	421	17229772	-	alr2280	-	two-component response regulator
2276	 32.05	-2	2747530..2748228	-	232	17229773	-	all2281	-	two-component response regulator
2277	 33.52	-2	2748221..2753572	-	1783	17229774	-	all2282	-	serine/threonine kinase protein
2278	 32.42	-2	2753815..2754144	-	109	17229775	-	all2283	-	anti-sigma factor antagonist
2279	 38.55	0	2754279..2754776	-	165	17229776	rsbW	all2284	-	sigma-B activity negative regulator
2280	 40.52	0	2754777..2755778	-	333	17229777	-	all2285	-	glucosyltransferase
2281	 40.98	0	2755775..2756284	-	169	17229778	-	all2286	-	glucosyltransferase
2282	 39.25	0	2756281..2756736	-	151	17229779	-	all2287	-	glucosyltransferase
2283	 43.22	0	2756810..2757841	-	343	17229780	-	all2288	-	glucosyltransferase
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.