IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2077	 43.30	0	2489250..2490212	+	320	17229574	cobD	alr2082	-	cobalamin biosynthesis protein
2078	 44.57	0	2490339..2490881	+	180	17229575	-	alr2083	-	pyrimidine regulatory protein PyrR
2079	 42.21	0	2491093..2492061	-	322	17229576	-	all2084	-	hypothetical protein
2080	 43.90	0	2492054..2492971	-	305	17229577	-	all2085	-	hypothetical protein
2081	 41.83	0	2493110..2494804	-	564	17229578	-	all2086	-	hypothetical protein
2082	 47.12	+1	2495318..2495629	+	103	17229579	rbpA2	alr2087	-	RNA-binding protein RbpA2
2083	 36.67	-1	2495812..2496681	-	289	17229580	-	all2088	-	hypothetical protein
2084	 41.61	0	2496754..2497236	-	160	17229581	-	all2089	-	hypothetical protein
2085	 44.33	0	2497473..2499281	+	602	17229582	-	alr2090	-	hypothetical protein
2086	 44.33	0	2499350..2500213	-	287	17229583	-	all2091	-	nicotinate-nucleotide pyrophosphorylase
2087	 41.15	0	2505711..2506772	+	353	17229584	hisC	alr2092	-	histidinol phosphate aminotransferase
2088	 35.19	-1	2506981..2507844	+	287	17229585	-	alr2093	-	hypothetical protein
2089	 38.64	0	2508306..2510021	-	571	17229586	-	all2094	-	two-component hybrid sensor and regulator
2090	 41.85	0	2510024..2514988	-	1654	17229587	-	all2095	-	two-component sensor histidine kinase
2091	 40.98	0	2515433..2516125	-	230	17229588	-	all2096	-	plastoquinol terminal oxidase
2092	 43.73	0	2516278..2517777	-	499	17229589	-	all2097	-	cell death suppressor protein
2093	 37.30	-1	2517982..2518359	-	125	17229590	-	all2098	-	hypothetical protein
2094	 42.80	0	2518619..2519389	-	256	17229591	-	all2099	-	hypothetical protein
2095	 41.67	0	2519474..2519749	-	91	17229592	-	asl2100	-	hypothetical protein
2096	 45.10	0	2519742..2519996	-	84	17229593	-	asl2101	-	hypothetical protein
2097	 48.19	+1	2520111..2521436	-	441	17229594	ama	all2102	-	N-acyl-L-amino acid amidohydrolase
2098	 43.94	0	2521463..2522056	-	197	17229595	-	all2103	-	hypothetical protein
2099	 44.91	0	2522289..2523878	+	529	17229596	-	alr2104	-	hypothetical protein
2100	 45.35	0	2524079..2524702	-	207	17229597	acpD	all2105	-	acyl carrier protein phosphodiesterase
2101	 41.74	0	2524933..2525265	+	110	17229598	-	alr2106	-	hypothetical protein
2102	 38.85	0	2525290..2525670	-	126	17229599	-	all2107	-	hypothetical protein
2103	 41.25	0	2525673..2526278	-	201	17229600	-	all2108	-	hypothetical protein
2104	 38.97	0	2526320..2526940	-	206	17229601	-	all2109	-	hypothetical protein
2105	 43.23	0	2526947..2527552	-	201	17229602	-	all2110	-	hypothetical protein
2106	 44.54	0	2527742..2528419	+	225	17229603	-	alr2111	-	hypothetical protein
2107	 38.41	0	2528424..2528975	+	183	17229604	-	alr2112	-	hypothetical protein
2108	 43.44	0	2529121..2530674	-	517	17229605	-	all2113	-	Na+/H+ antiporter
2109	 45.95	0	2530912..2532393	+	493	17229606	-	alr2114	-	hypothetical protein
2110	 38.95	0	2532454..2533326	-	290	17229607	-	all2115	-	hypothetical protein
2111	 42.29	0	2533448..2534698	-	416	17229608	-	all2116	-	hypothetical protein
2112	 43.76	0	2535035..2536846	+	603	17229609	-	alr2117	-	hypothetical protein
2113	 43.64	0	2537171..2537791	+	206	17229610	-	alr2118	-	iron(II) transporter
2114	 43.17	0	2537919..2539382	+	487	17229611	-	alr2119	-	iron(II) transporter
2115	 45.33	0	2539384..2539608	+	74	17229612	-	asr2120	-	hypothetical protein
2116	 45.12	0	2539609..2540601	-	330	17229613	-	all2121	-	hypothetical protein
2117	 40.89	0	2540872..2541480	+	202	17229614	-	alr2122	-	hypothetical protein
2118	 37.60	-1	2541480..2542862	+	460	17229615	-	alr2123	-	two-component sensor histidine kinase
2119	 43.13	0	2543336..2548387	-	1683	17229616	-	all2124	-	WD-40 repeat-containing protein
2120	 45.03	0	2548971..2549705	+	244	17229617	-	alr2125	-	hypothetical protein
2121	 42.69	0	2549963..2550892	-	309	17229618	-	all2126	-	hypothetical protein
2122	 37.09	-1	2550954..2552312	-	452	17229619	-	all2127	-	hypothetical protein
2123	 41.30	0	2552484..2552822	-	112	17229620	-	all2128	-	hypothetical protein
2124	 43.20	0	2553022..2555898	-	958	17229621	-	all2129	-	hypothetical protein
2125	 39.02	0	2556101..2556469	+	122	17229622	-	alr2130	-	hypothetical protein
2126	 44.35	0	2556912..2558372	+	486	17229623	-	alr2131	-	hypothetical protein
2127	 44.87	0	2558471..2559649	+	392	17229624	-	alr2132	-	hypothetical protein
2128	 51.05	+2	2559898..2560230	-	110	17229625	-	all2133	-	hypothetical protein
2129	 54.27	+2	2560329..2561441	-	370	17229626	-	all2134	-	hypothetical protein
2130	 44.07	0	2562625..2562801	+	58	17229627	-	asr2135	-	hypothetical protein
2131	 40.17	0	2563080..2563781	+	233	17229628	-	alr2136	-	hypothetical protein
2132	 47.41	+1	2564524..2567358	+	944	17229629	-	alr2137	-	two-component sensor histidine kinase
2133	 46.35	+1	2567366..2567995	+	209	17229630	-	alr2138	-	two-component response regulator
2134	 51.82	+2	2568400..2568702	+	100	17229631	-	alr2139	-	hypothetical protein
2135	 43.91	0	2569107..2569664	+	185	17229632	-	alr2140	-	hypothetical protein
2136	 56.10	+2	2569829..2570812	+	327	17229633	-	alr2141	-	hypothetical protein
2137	 51.56	+2	2570849..2571583	+	244	17229634	-	alr2142	-	oxidoreductase
2138	 45.08	0	2571745..2572536	+	263	17229635	-	alr2143	-	hypothetical protein
2139	 44.67	0	2572653..2572952	+	99	17229636	-	alr2144	-	hypothetical protein
2140	 42.90	0	2573297..2574247	-	316	17229637	-	all2145	-	transposase
2141	 37.79	-1	2574404..2576197	-	597	17229638	-	all2146	-	ATP-binding protein of ABC transporter
2142	 37.29	-1	2576629..2577714	-	361	17229639	-	all2147	-	ferrichrome binding protein of ABC transporter
2143	 42.55	0	2577813..2580404	-	863	17229640	-	all2148	-	ferrichrome-iron receptor
2144	 36.37	-1	2580623..2581642	-	339	17229641	-	all2149	-	transcriptional regulator
2145	 42.26	0	2581757..2581924	-	55	17229642	-	asl2150	-	hypothetical protein
2146	 45.10	0	2582400..2582603	-	67	17229643	-	asl2151	-	hypothetical protein
2147	 44.29	0	2582883..2583722	-	279	17229644	-	all2152	-	transposase
2148	 40.39	0	2584214..2586622	+	802	17229645	-	alr2153	-	outer membrane heme receptor
2149	 36.57	-1	2586680..2587543	+	287	17229646	-	alr2154	-	tetracenomycin C synthesis protein
2150	 39.19	0	2587571..2587792	+	73	17229647	-	asr2155	-	hypothetical protein
2151	 35.97	-1	2587831..2588247	-	138	17229648	-	all2156	-	hypothetical protein
2152	 34.88	-1	2588213..2589244	-	343	17229649	-	all2157	-	iron(III) dicitrate-binding periplasmic protein of ABC transporter
2153	 43.04	0	2589320..2591956	-	878	17229650	-	all2158	-	ferrichrome-iron receptor
2154	 45.16	0	2592076..2593098	-	340	17229651	-	all2159	-	transcriptional regulator
2155	 39.66	0	2593181..2593354	+	57	17229652	-	asr2160	-	hypothetical protein
2156	 41.33	0	2593463..2596387	-	974	17229653	-	all2161	-	two-component hybrid sensor and regulator
2157	 43.51	0	2596466..2598724	-	752	17229654	-	all2162	-	methyl-accepting chemotaxis protein
2158	 36.47	-1	2598767..2599276	-	169	17229655	-	all2163	-	hypothetical protein
2159	 37.57	-1	2599281..2599658	-	125	17229656	-	all2164	-	two-component system, regulatory protein
2160	 37.84	-1	2599675..2600718	-	347	17229657	-	all2165	-	two-component response regulator
2161	 44.65	0	2601338..2602654	-	438	17229658	-	all2166	-	gamma-glutamyl phosphate reductase
2162	 42.17	0	2602880..2603377	-	165	17229659	-	all2167	-	transposase
2163	 41.67	0	2603383..2604570	+	395	17229660	-	alr2168	-	transposase
2164	 38.10	0	2605145..2605627	+	160	17229661	-	alr2169	-	hypothetical protein
2165	 45.33	0	2605759..2608416	-	885	17229662	-	all2170	-	hypothetical protein
2166	 40.49	0	2608409..2610853	-	814	17229663	-	all2171	-	hypothetical protein
2167	 38.37	0	2611093..2611350	+	85	17229664	-	asr2172	-	hypothetical protein
2168	 31.92	-2	2611347..2611700	+	117	17229665	-	alr2173	-	hypothetical protein
2169	 41.67	0	2612058..2613053	+	331	17229666	-	alr2174	-	transcriptional regulator
2170	 41.67	0	2613234..2615825	+	863	17229667	-	alr2175	-	ferrichrome iron receptor
2171	 36.74	-1	2615954..2616922	+	322	17229668	-	alr2176	-	iron(III) dicitrate-binding protein of ABC transporter
2172	 40.79	0	2617118..2618002	-	294	17229669	-	all2177	-	hypothetical protein
2173	 40.94	0	2618247..2619245	+	332	17229670	-	alr2178	-	transcriptional regulator
2174	 42.90	0	2619398..2620933	+	511	17229671	-	alr2179	-	ferrichrome-iron receptor
2175	 48.72	+1	2621495..2621806	-	103	17229672	-	all2180	-	hypothetical protein
2176	 34.85	-1	2621958..2622089	-	43	17229673	-	asl2181	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.