IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1976	 35.79	-1	2368425..2369402	-	325	17229473	-	all1981	-	hypothetical protein
1977	 46.54	+1	2370491..2371444	+	317	17229474	-	alr1982	-	hypothetical protein
1978	 42.43	0	2371483..2373879	-	798	17229475	comE	all1983	-	competence protein
1979	 43.42	0	2373942..2374427	-	161	17229476	-	all1984	-	hypothetical protein
1980	 44.18	0	2374532..2375416	-	294	17229477	glyQ	all1985	-	glycyl-tRNA synthetase subunit alpha
1981	 40.08	0	2379223..2380185	-	320	17229478	-	all1986	-	transposase
1982	 37.25	-1	2382281..2382790	-	169	17229479	-	all1987	-	hypothetical protein
1983	 39.97	0	2382860..2383642	-	260	17229480	-	all1988	-	hypothetical protein
1984	 42.56	0	2383665..2386004	-	779	17229481	recJ	all1989	-	single-strand-DNA-specific exonuclease
1985	 38.79	0	2386021..2386662	-	213	17229482	-	all1990	-	N-terminal acetyltransferase
1986	 39.18	0	2386735..2387607	-	290	17229483	-	all1991	-	hypothetical protein
1987	 41.88	0	2387722..2387955	-	77	17229484	-	asl1992	-	transposase
1988	 40.62	0	2388039..2388230	-	63	17229485	-	asl1993	-	hypothetical protein
1989	 36.84	-1	2388272..2388442	-	56	17229486	-	asl1994	-	hypothetical protein
1990	 41.89	0	2388467..2389132	-	221	17229487	-	all1995	-	hypothetical protein
1991	 46.32	+1	2389170..2389577	-	135	17229488	-	all1996	-	hypothetical protein
1992	 46.18	+1	2389848..2390750	+	300	17229489	-	alr1997	-	hypothetical protein
1993	 42.76	0	2390783..2392150	+	455	17229490	-	alr1998	-	hypothetical protein
1994	 43.32	0	2392459..2393109	+	216	17229491	-	alr1999	-	hypothetical protein
1995	 43.77	0	2393179..2393772	-	197	17229492	-	all2000	-	hypothetical protein
1996	 46.45	+1	2394000..2394815	+	271	17229493	-	alr2001	-	hypothetical protein
1997	 39.29	0	2394959..2395546	-	195	17229494	-	all2002	-	hypothetical protein
1998	 43.56	0	2395912..2396214	-	100	17229495	-	all2003	-	hypothetical protein
1999	 47.50	+1	2396289..2398604	-	771	17229496	-	all2004	-	cation transporting ATPase
2000	 45.47	0	2398711..2399163	-	150	17229497	-	all2005	-	hypothetical protein
2001	 41.34	0	2399454..2400602	-	382	17229498	-	all2006	-	hypothetical protein
2002	 40.37	0	2400694..2401233	-	179	17229499	-	all2007	-	polypeptide deformylase
2003	 44.68	0	2401466..2402716	-	416	17229500	-	all2008	-	serine proteinase
2004	 41.59	0	2403018..2404397	+	459	17229501	dnaA	alr2009	-	chromosomal replication initiation protein
2005	 44.16	0	2404812..2405975	+	387	17229502	dnaN	alr2010	-	DNA polymerase III subunit beta
2006	 46.39	+1	2406078..2407019	-	313	17229503	-	all2011	-	permease protein of ABC transporter
2007	 35.52	-1	2407023..2408030	-	335	17229504	-	all2012	-	permease protein of ABC transporter
2008	 43.19	0	2408036..2408755	-	239	17229505	-	all2013	-	hypothetical protein
2009	 39.96	0	2409116..2409568	+	150	17229506	-	alr2014	-	hypothetical protein
2010	 36.57	-1	2409576..2410007	+	143	17229507	-	alr2015	-	hypothetical protein
2011	 35.71	-1	2410218..2410511	+	97	17229508	-	asr2016	-	hypothetical protein
2012	 40.09	0	2410859..2411287	-	142	17229509	-	all2017	-	hypothetical protein
2013	 38.86	0	2411491..2412141	+	216	17229510	-	alr2018	-	hypothetical protein
2014	 38.23	0	2412482..2412910	+	142	17229511	-	alr2019	-	hypothetical protein
2015	 43.93	0	2413761..2416619	-	952	17229512	-	all2020	-	ABC transporter ATP-binding protein
2016	 45.82	0	2416819..2418957	-	712	17229513	-	all2021	-	ABC transporter ATP-binding protein
2017	 45.25	0	2419028..2420395	-	455	17229514	-	all2022	-	hypothetical protein
2018	 39.54	0	2420472..2422502	-	676	17229515	-	all2023	-	hypothetical protein
2019	 37.07	-1	2422616..2422909	-	97	17229516	-	asl2024	-	hypothetical protein
2020	 37.10	-1	2423195..2426482	-	1095	17229517	-	all2025	-	hypothetical protein
2021	 34.19	-1	2426877..2427227	-	116	17229518	-	all2026	-	hypothetical protein
2022	 38.10	0	2427385..2427720	-	111	17229519	-	all2027	-	hypothetical protein
2023	 35.45	-1	2427854..2428042	-	62	17229520	-	asl2028	-	hypothetical protein
2024	 47.43	+1	2428039..2429301	-	420	17229521	-	all2029	-	heme biosynthesis protein
2025	 38.14	0	2429406..2429759	-	117	17229522	-	all2030	-	hypothetical protein
2026	 41.64	0	2429842..2430936	-	364	17229523	-	all2031	-	hypothetical protein
2027	 37.94	0	2430974..2432146	-	390	17229524	-	all2032	-	hypothetical protein
2028	 39.54	0	2432154..2432942	-	262	17229525	minD	all2033	-	cell division inhibitor
2029	 44.37	0	2432985..2434361	-	458	17229526	-	all2034	-	hypothetical protein
2030	 41.96	0	2434538..2435383	-	281	17229527	-	all2035	-	transcriptional regulator
2031	 32.03	-2	2435463..2435615	+	50	17229528	-	asr2036	-	hypothetical protein
2032	 43.32	0	2435914..2437014	-	366	17229529	-	all2037	-	hypothetical protein
2033	 42.43	0	2437128..2439359	-	743	17229530	-	all2038	-	hypothetical protein
2034	 35.56	-1	2439824..2440363	-	179	17229531	-	all2039	-	hypothetical protein
2035	 41.82	0	2440360..2441478	-	372	17229532	-	all2040	-	hypothetical protein
2036	 35.39	-1	2442437..2442679	+	80	17229533	-	asr2041	-	hypothetical protein
2037	 37.77	-1	2442745..2444571	+	608	17229534	-	alr2042	-	hypothetical protein
2038	 39.15	0	2444592..2447324	+	910	17229535	-	alr2043	-	hypothetical protein
2039	 38.35	0	2447411..2450458	+	1015	17229536	-	alr2044	-	hypothetical protein
2040	 43.18	0	2450627..2451388	+	253	17229537	-	alr2045	-	hypothetical protein
2041	 47.85	+1	2451588..2453909	+	773	17229538	-	alr2046	-	hypothetical protein
2042	 42.47	0	2454198..2454416	-	72	17229539	-	asl2047	-	hypothetical protein
2043	 46.69	+1	2454647..2455387	+	246	17229540	dapF	alr2048	-	diaminopimelate epimerase
2044	 37.63	-1	2455566..2456030	+	154	17229541	-	alr2049	-	two-component response regulator
2045	 43.47	0	2456091..2457728	-	545	17229542	-	all2050	-	hypothetical protein
2046	 45.79	0	2458069..2459898	+	609	17229543	-	alr2051	-	gamma-glutamyltranspeptidase
2047	 46.13	+1	2459902..2460198	-	98	17229544	-	asl2052	-	hypothetical protein
2048	 44.99	0	2460573..2461121	-	182	17229545	-	all2053	-	hypothetical protein
2049	 45.52	0	2461341..2462300	+	319	17229546	-	alr2054	-	aldo/keto reductase
2050	 32.35	-2	2463196..2463909	+	237	17229547	-	alr2055	-	hypothetical protein
2051	 42.28	0	2464159..2465097	-	312	17229548	-	all2056	-	hypothetical protein
2052	 43.10	0	2465228..2466097	+	289	17229549	aroE	alr2057	-	shikimate 5-dehydrogenase
2053	 38.05	0	2466107..2467102	-	331	17229550	-	all2058	-	hypothetical protein
2054	 44.28	0	2467173..2467766	-	197	17229551	-	all2059	-	hypothetical protein
2055	 42.26	0	2467904..2468407	+	167	17229552	-	alr2060	-	hypothetical protein
2056	 39.07	0	2468476..2468754	-	92	17229553	-	asl2061	-	hypothetical protein
2057	 46.15	+1	2468935..2469285	-	116	17229554	-	all2062	-	hypothetical protein
2058	 47.47	+1	2469353..2470003	-	216	17229555	upp	all2063	-	uracil phosphoribosyltransferase
2059	 43.92	0	2470593..2472113	+	506	17229556	-	alr2064	-	hypothetical protein
2060	 40.08	0	2472477..2473439	-	320	17229557	-	all2065	-	transposase
2061	 39.18	0	2473748..2474260	-	170	17229558	-	all2066	-	transposase
2062	 40.18	0	2474290..2474859	-	189	17229559	-	all2067	-	transposase
2063	 38.14	0	2474972..2475907	-	311	17229560	-	all2068	-	hypothetical protein
2064	 37.04	-1	2476011..2476388	-	125	17229561	-	all2069	-	hypothetical protein
2065	 41.72	0	2476471..2477376	-	301	17229562	-	all2070	-	hypothetical protein
2066	 48.85	+1	2477674..2478150	+	158	17229563	-	alr2071	-	hypothetical protein
2067	 48.99	+1	2478215..2479306	-	363	17229564	thrC	all2072	-	threonine synthase
2068	 47.10	+1	2479892..2481133	+	413	17229565	argJ	alr2073	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2069	 45.50	0	2481178..2481588	+	136	17229566	-	alr2074	-	hypothetical protein
2070	 41.69	0	2481632..2482924	+	430	17229567	-	alr2075	-	hypothetical protein
2071	 42.72	0	2483211..2484830	+	539	17229568	-	alr2076	-	hypothetical protein
2072	 40.16	0	2484948..2485313	-	121	17229569	-	all2077	-	hypothetical protein
2073	 33.33	-2	2485896..2486144	-	82	17229570	-	asl2078	-	hypothetical protein
2074	 44.69	0	2486176..2487936	+	586	17229571	-	alr2079	-	hypothetical protein
2075	 41.06	0	2487981..2488394	-	137	17229572	-	all2080	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.