IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1825	 38.83	0	2194556..2194864	-	102	17229322	-	all1830	-	hypothetical protein
1826	 43.17	0	2195126..2196223	-	365	17229323	-	all1831	-	hypothetical protein
1827	 48.12	+1	2196519..2197958	+	479	17229324	pds	alr1832	-	phytoene desaturase
1828	 49.41	+1	2197942..2198874	+	310	17229325	pys	alr1833	-	phytoene synthase
1829	 47.59	+1	2199462..2200787	+	441	17229326	-	alr1834	-	hypothetical protein
1830	 44.65	0	2200898..2201719	-	273	17229327	-	all1835	-	hypothetical protein
1831	 54.76	+2	2201834..2202001	+	55	17229328	-	asr1836	-	hypothetical protein
1832	 46.30	+1	2202019..2202681	-	220	17229329	-	all1837	-	putative monovalent cation/H+ antiporter subunit B
1833	 45.53	0	2202678..2203259	-	193	17229330	-	all1838	-	hypothetical protein
1834	 40.86	0	2203240..2203518	-	92	17229331	-	asl1839	-	hypothetical protein
1835	 42.46	0	2203515..2203766	-	83	17229332	-	asl1840	-	hypothetical protein
1836	 43.59	0	2203763..2204152	-	129	17229333	-	all1841	-	hypothetical protein
1837	 45.03	0	2204149..2205576	-	475	17229334	-	all1842	-	putative monovalent cation/H+ antiporter subunit D
1838	 44.35	0	2205573..2205908	-	111	17229335	-	all1843	-	putative monovalent cation/H+ antiporter subunit C
1839	 45.64	0	2206295..2207464	-	389	17229336	-	all1844	-	hypothetical protein
1840	 45.61	0	2207650..2208309	+	219	17229337	trmB	alr1845	-	tRNA (guanine-N(7))-methyltransferase
1841	 44.79	0	2208314..2210356	-	680	17229338	-	all1846	-	two-component hybrid sensor and regulator
1842	 44.15	0	2210361..2210933	-	190	17229339	-	all1847	-	hypothetical protein
1843	 40.67	0	2210933..2211763	-	276	17229340	-	all1848	-	hypothetical protein
1844	 43.10	0	2211917..2212735	-	272	17229341	-	all1849	-	hypothetical protein
1845	 48.42	+1	2212895..2215108	+	737	17229342	-	alr1850	-	hypothetical protein
1846	 38.66	0	2215300..2216013	+	237	17229343	-	alr1851	-	hypothetical protein
1847	 34.60	-1	2216017..2216646	+	209	17229344	-	alr1852	-	hypothetical protein
1848	 40.18	0	2216788..2217357	+	189	17229345	-	alr1853	-	transposase
1849	 39.18	0	2217387..2217899	+	170	17229346	-	alr1854	-	transposase
1850	 34.70	-1	2218094..2219854	+	586	17229347	-	alr1855	-	hypothetical protein
1851	 30.70	-2	2220384..2220725	+	113	17229348	-	alr1856	-	hypothetical protein
1852	 35.50	-1	2220890..2221120	+	76	17229349	-	asr1857	-	hypothetical protein
1853	 41.39	0	2221478..2221837	+	119	17229350	-	alr1858	-	transposase
1854	 40.45	0	2221932..2222423	+	163	17229351	-	alr1859	-	transposase
1855	 36.11	-1	2222954..2223313	+	119	17229352	-	alr1860	-	hypothetical protein
1856	 49.26	+1	2223388..2224197	-	269	17229353	-	all1861	-	hypothetical protein
1857	 41.52	0	2224411..2225412	-	333	17229354	-	all1862	-	hypothetical protein
1858	 45.60	0	2225862..2226725	-	287	17229355	-	all1863	-	carboxyphosphonoenolpyruvate phosphonomutase
1859	 43.73	0	2226920..2227669	-	249	17229356	-	all1864	-	hypothetical protein
1860	 45.41	0	2227714..2228922	-	402	17229357	-	all1865	-	hypothetical protein
1861	 43.54	0	2228946..2229278	-	110	17229358	-	all1866	-	thioredoxin
1862	 42.48	0	2229356..2229694	+	112	17229359	-	alr1867	-	transcriptional regulator
1863	 41.67	0	2229732..2230031	+	99	17229360	-	alr1868	-	hypothetical protein
1864	 42.12	0	2230179..2232419	+	746	17229361	-	alr1869	-	serine/threonine kinase
1865	 43.52	0	2232459..2233508	+	349	17229362	-	alr1870	-	hypothetical protein
1866	 47.01	+1	2233585..2233935	-	116	17229363	-	all1871	-	hypothetical protein
1867	 46.49	+1	2234079..2235590	-	503	17229364	-	all1872	-	hypothetical protein
1868	 43.97	0	2235680..2236027	-	115	17229365	-	all1873	-	hypothetical protein
1869	 37.50	-1	2236221..2236796	+	191	17229366	-	alr1874	-	hypothetical protein
1870	 45.20	0	2236871..2238379	-	502	17229367	-	all1875	-	hypothetical protein
1871	 45.06	0	2238798..2239769	-	323	17229368	-	all1876	-	putative lipid kinase
1872	 39.18	0	2239950..2240411	+	153	17229369	-	alr1877	-	hypothetical protein
1873	 44.61	0	2240586..2241596	+	336	17229370	hemC	alr1878	-	porphobilinogen deaminase
1874	 46.72	+1	2241717..2243135	+	472	17229371	glgA	alr1879	-	glycogen synthase
1875	 41.88	0	2243238..2244314	-	358	17229372	-	all1880	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1876	 43.57	0	2244533..2245177	-	214	17229373	-	all1881	-	hypothetical protein
1877	 41.60	0	2245351..2246052	-	233	17229374	-	all1882	-	hypothetical protein
1878	 38.38	0	2246384..2249968	+	1194	17229375	-	alr1883	-	two-component hybrid sensor and regulator
1879	 44.30	0	2250052..2250735	-	227	17229376	-	all1884	-	hypothetical protein
1880	 46.47	+1	2251283..2252302	+	339	17229377	tgt	alr1885	-	queuine tRNA-ribosyltransferase
1881	 42.39	0	2252568..2253362	-	264	17229378	-	all1886	-	hypothetical protein
1882	 44.95	0	2253479..2254606	-	375	17229379	-	all1887	-	hypothetical protein
1883	 38.05	0	2254768..2258538	-	1256	17229380	-	all1888	-	hypothetical protein
1884	 44.17	0	2258596..2259315	-	239	17229381	-	all1889	-	hypothetical protein
1885	 49.34	+1	2259596..2261176	+	526	17229382	-	alr1890	-	D-3-phosphoglycerate dehydrogenase
1886	 44.52	0	2261255..2262175	+	306	17229383	prmA	alr1891	-	ribosomal protein L11 methyltransferase
1887	 42.20	0	2262339..2262665	+	108	17229384	-	alr1892	-	hypothetical protein
1888	 38.36	0	2262788..2263105	-	105	17229385	-	all1893	-	thioredoxin
1889	 45.63	0	2263478..2264233	+	251	17229386	fabG	alr1894	-	3-ketoacyl-(acyl-carrier-protein) reductase
1890	 47.65	+1	2264325..2265407	-	360	17229387	-	all1895	-	hypothetical protein
1891	 45.87	0	2265567..2267249	+	560	17229388	groEL	alr1896	-	chaperonin GroEL
1892	 43.79	0	2267476..2268192	-	238	17229389	-	all1897	-	heme oxygenase
1893	 41.21	0	2268346..2268510	-	54	17229390	-	asl1898	-	hypothetical protein
1894	 51.28	+2	2268672..2268905	+	77	17229391	-	asr1899	-	hypothetical protein
1895	 46.40	+1	2268929..2270413	+	494	17229392	-	alr1900	-	phosphoglucomutase
1896	 48.14	+1	2270591..2271637	+	348	17229393	-	alr1901	-	RNA 3'-terminal-phosphate cyclase
1897	 42.66	0	2271640..2272143	-	167	17229394	-	all1902	-	hypothetical protein
1898	 45.78	0	2272772..2277415	+	1547	17229395	-	alr1903	-	hypothetical protein
1899	 44.33	0	2277501..2280083	-	860	17229396	cyaB2	all1904	-	adenylate cyclase
1900	 40.90	0	2280690..2281046	+	118	17229397	-	alr1905	-	hypothetical protein
1901	 43.09	0	2281207..2283624	+	805	17229398	-	alr1906	-	hypothetical protein
1902	 34.52	-1	2283855..2284022	+	55	17229399	-	asr1907	-	hypothetical protein
1903	 39.79	0	2284032..2284604	-	190	17229400	-	all1908	-	hypothetical protein
1904	 41.51	0	2285208..2286455	+	415	17229401	-	alr1909	-	bifunctional sterol desaturase/short chain dehydrogenase
1905	 39.96	0	2286783..2287673	+	296	17229402	-	alr1910	-	hypothetical protein
1906	 43.88	0	2288003..2291566	+	1187	17229403	nifJ	alr1911	-	pyruvate flavodoxin dehydrogenase
1907	 43.60	0	2291711..2292742	+	343	17229404	-	alr1912	-	dihydroorotate dehydrogenase 2
1908	 46.28	+1	2293110..2294183	+	357	17229405	pfkA	alr1913	-	6-phosphofructokinase
1909	 41.67	0	2294202..2297573	-	1123	17229406	-	all1914	-	hypothetical protein
1910	 32.24	-2	2297885..2298067	+	60	17229407	-	asr1915	-	hypothetical protein
1911	 42.16	0	2298095..2299351	-	418	17229408	-	all1916	-	sugar transport system, sugar-binding protein
1912	 39.71	0	2299476..2299883	+	135	17229409	-	alr1917	-	hypothetical protein
1913	 41.86	0	2300020..2300793	+	257	17229410	-	alr1918	-	hypothetical protein
1914	 46.07	0	2300999..2302639	-	546	17229411	-	all1919	-	serine/threonine kinase
1915	 42.38	0	2302929..2303669	+	246	17229412	-	alr1920	-	hypothetical protein
1916	 44.44	0	2303806..2304813	+	335	17229413	-	alr1921	-	biotin synthase
1917	 44.79	0	2304865..2304960	-	31	17229414	petL	asl1922	-	cytochrome b6-f complex subunit PetL
1918	 43.45	0	2305186..2305788	+	200	17229415	-	alr1923	-	hypothetical protein
1919	 43.68	0	2305860..2306951	+	363	17229416	aroB	alr1924	-	3-dehydroquinate synthase
1920	 36.76	-1	2307770..2308498	+	242	17229417	-	alr1925	-	hypothetical protein
1921	 37.39	-1	2309836..2310426	+	196	17229418	-	alr1926	-	hypothetical protein
1922	 43.31	0	2310609..2313644	+	1011	17229419	-	alr1927	-	ABC transporter ATP-binding protein
1923	 42.95	0	2313735..2315273	+	512	17229420	-	alr1928	-	hypothetical protein
1924	 36.98	-1	2315533..2316381	+	282	17229421	-	alr1929	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.