IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
137	 49.80	+1	141751..143280	-	509	17227634	psbB	all0138	-	photosystem II CP47 protein
138	 41.98	0	143704..144027	-	107	17227635	-	all0139	-	hypothetical protein
139	 41.77	0	144629..146287	+	552	17227636	-	alr0140	-	periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
140	 43.08	0	146423..147448	+	341	17227637	-	alr0141	-	permease protein of oligopeptide ABC transporter
141	 44.99	0	147532..148440	+	302	17227638	-	alr0142	-	ribonuclease H
142	 46.48	+1	148503..149681	-	392	17227639	-	all0143	-	hypothetical protein
143	 44.26	0	149871..150776	-	301	17227640	-	all0144	-	hypothetical protein
144	 40.00	0	151210..151659	+	149	17227641	-	alr0145	-	hypothetical protein
145	 49.10	+1	151736..152014	-	92	17227642	rpmA	asl0146	-	50S ribosomal protein L27
146	 45.29	0	152042..152434	-	130	17227643	rplU	all0147	-	50S ribosomal protein L21
147	 37.40	-1	152869..153114	+	81	17227644	-	asr0148	-	hypothetical protein
148	 34.11	-1	153111..153497	+	128	17227645	-	alr0149	-	hypothetical protein
149	 37.01	-1	153551..154639	+	362	17227646	-	alr0150	-	hypothetical protein
150	 42.76	0	154744..155040	-	98	17227647	-	asl0151	-	hypothetical protein
151	 48.62	+1	155135..156259	-	374	17227648	chlI	all0152	-	protoporphyrin IX magnesium chelatase chain
152	 41.08	0	156575..158188	+	537	17227649	-	alr0153	-	penicillin-binding protein
153	 43.83	0	158589..159779	-	396	17227650	ftsW	all0154	-	cell division protein
154	 43.22	0	159979..160524	-	181	17227651	-	all0155	-	hypothetical protein
155	 42.72	0	161060..161581	-	173	17227652	-	all0156	-	hypothetical protein
156	 34.23	-1	161681..162349	-	222	17227653	-	all0157	-	hypothetical protein
157	 31.94	-2	162352..163140	-	262	17227654	-	all0158	-	hypothetical protein
158	 37.27	-1	163382..164575	+	397	17227655	-	alr0159	-	hypothetical protein
159	 45.11	0	164558..165712	-	384	17227656	-	all0160	-	hypothetical protein
160	 38.10	0	165871..166206	-	111	17227657	petJ	all0161	-	cytochrome c6
161	 39.33	0	166535..167335	+	266	17227658	-	alr0162	-	hypothetical protein
162	 40.11	0	167600..167776	-	58	17227659	-	asl0163	-	hypothetical protein
163	 41.06	0	167936..168349	-	137	17227660	-	all0164	-	hypothetical protein
164	 47.32	+1	168634..171099	+	821	17227661	-	alr0165	-	hypothetical protein
165	 44.69	0	171094..172581	-	495	17227662	-	all0166	-	alpha,alpha-trehalase
166	 41.68	0	172658..175426	-	922	17227663	-	all0167	-	maltooligosyltrehalose synthase
167	 42.94	0	175504..177366	-	620	17227664	-	all0168	-	alpha-amylase
168	 42.09	0	177701..179629	+	642	17227665	-	alr0169	-	cyclomaltodextrin glucanotransferase
169	 45.63	0	180025..181122	-	365	17227666	-	all0170	-	glycolate oxidase
170	 34.96	-1	181350..181595	-	81	17227667	-	asl0171	-	hypothetical protein
171	 37.75	-1	181582..181989	-	135	17227668	-	all0172	-	hypothetical protein
172	 44.75	0	182241..183116	-	291	17227669	-	all0173	-	hypothetical protein
173	 48.21	+1	183300..184643	-	447	17227670	-	all0174	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
174	 46.72	+1	185196..186017	+	273	17227671	-	alr0175	-	rRNA methylase
175	 40.53	0	186051..186314	-	87	17227672	-	asl0176	-	hypothetical protein
176	 46.47	+1	186584..188296	-	570	17227673	-	all0177	-	flavoprotein
177	 45.52	0	188577..190316	-	579	17227674	-	all0178	-	flavoprotein
178	 44.72	0	190785..191030	+	81	17227675	-	asr0179	-	hypothetical protein
179	 43.81	0	191109..191891	+	260	17227676	-	alr0180	-	ATP-binding protein of ABC transporter
180	 42.63	0	191965..193395	+	476	17227677	-	alr0181	-	hypothetical protein
181	 40.60	0	193375..195522	-	715	17227678	-	all0182	-	two-component hybrid sensor and regulator
182	 52.73	+2	195669..195833	+	54	17227679	-	asr0183	-	hypothetical protein
183	 43.38	0	196342..197625	-	427	17227680	-	all0184	-	hypothetical protein
184	 45.53	0	198619..200283	-	554	17227681	-	all0185	-	hypothetical protein
185	 38.46	0	200312..200818	-	168	17227682	-	all0186	-	hypothetical protein
186	 43.92	0	200895..202406	-	503	17227683	-	all0187	-	transcriptional regulator
187	 44.29	0	202511..203587	+	358	17227684	-	alr0188	-	GDP-mannose pyrophosphorylase
188	 43.07	0	203773..205416	+	547	17227685	-	alr0189	-	hypothetical protein
189	 43.65	0	205651..206619	+	322	17227686	-	alr0190	-	ATP-binding protein of ABC transporter
190	 38.40	0	206635..207423	+	262	17227687	-	alr0191	-	hypothetical protein
191	 37.18	-1	207550..209211	-	553	17227688	-	all0192	-	serine/threonine kinase
192	 44.94	0	209314..210192	-	292	17227689	-	all0193	-	haloalkane dehalogenase
193	 36.60	-1	210583..211164	+	193	17227690	-	alr0194	-	hypothetical protein
194	 38.14	0	211252..211605	-	117	17227691	-	all0195	-	hypothetical protein
195	 34.38	-1	211897..213228	+	443	17227692	-	alr0196	-	hypothetical protein
196	 42.69	0	213384..214217	-	277	17227693	-	all0197	-	hypothetical protein
197	 40.39	0	214817..215383	+	188	17227694	-	alr0198	-	hypothetical protein
198	 42.70	0	215440..215973	+	177	17227695	-	alr0199	-	hypothetical protein
199	 45.90	0	216123..217403	-	426	17227696	-	all0200	-	hypothetical protein
200	 42.88	0	217665..218324	+	219	17227697	-	alr0201	-	hypothetical protein
201	 43.70	0	218697..219911	+	404	17227698	-	alr0202	-	hypothetical protein
202	 36.40	-1	220171..220659	+	162	17227699	-	alr0203	-	hypothetical protein
203	 43.17	0	220781..220963	-	60	17227700	-	asl0204	-	hypothetical protein
204	 41.86	0	221033..223189	+	718	17227701	-	alr0205	-	ATP-dependent DNA helicase
205	 36.61	-1	223223..223405	-	60	17227702	-	asl0206	-	hypothetical protein
206	 43.84	0	223902..225500	-	532	17227703	-	all0207	-	hypothetical protein
207	 38.59	0	225850..226401	+	183	17227704	-	alr0208	-	hypothetical protein
208	 40.73	0	226463..227584	-	373	17227705	-	all0209	-	hypothetical protein
209	 41.04	0	227660..228100	-	146	17227706	mutT	all0210	-	mutator protein
210	 40.16	0	228132..228512	-	126	17227707	-	all0211	-	hypothetical protein
211	 45.78	0	228735..229634	+	299	17227708	-	alr0212	-	methylenetetrahydrofolate dehydrogenase
212	 43.66	0	229783..230712	+	309	17227709	-	alr0213	-	geranylgeranyl diphosphate synthase
213	 45.86	0	230843..231313	+	156	17227710	-	alr0214	-	hypothetical protein
214	 45.85	0	231332..231970	-	212	17227711	-	all0215	-	hypothetical protein
215	 40.77	0	232191..232526	-	111	17227712	-	all0216	-	hypothetical protein
216	 42.78	0	232629..233348	-	239	17227713	-	all0217	-	hypothetical protein
217	 49.44	+1	233461..234180	-	239	17227714	pdxJ	all0218	-	pyridoxal phosphate biosynthetic protein PdxJ
218	 42.72	0	234339..236096	-	585	17227715	-	all0219	-	hypothetical protein
219	 43.40	0	236408..237142	-	244	17227716	-	all0220	-	isopentenyl transferase
220	 41.62	0	237409..237903	+	164	17227717	-	alr0221	-	hypothetical protein
221	 46.97	+1	238171..239307	+	378	17227718	gltA	alr0222	-	methylcitrate synthase
222	 46.11	+1	239773..240891	+	372	17227719	ndhA	alr0223	-	NADH dehydrogenase subunit H
223	 46.32	+1	240980..241564	+	194	17227720	ndhI	alr0224	-	NADH dehydrogenase subunit I
224	 45.48	0	241665..242273	+	202	17227721	ndhG	alr0225	-	NADH dehydrogenase subunit J
225	 41.83	0	242311..242616	+	101	17227722	ndhE	alr0226	-	NADH dehydrogenase subunit K
226	 45.82	0	242623..243543	+	306	17227723	ppnK	alr0227	-	inorganic polyphosphate/ATP-NAD kinase
227	 32.71	-2	243866..244669	+	267	17227724	-	alr0228	-	hypothetical protein
228	 29.33	-2	244854..245078	+	74	17227725	-	asr0229	-	hypothetical protein
229	 33.96	-1	245146..246753	+	535	17227726	-	alr0230	-	hypothetical protein
230	 38.95	0	246770..247927	-	385	17227727	-	all0231	-	hypothetical protein
231	 41.90	0	248183..248812	-	209	17227728	-	all0232	-	hypothetical protein
232	 41.56	0	248988..250580	-	530	17227729	metG	all0233	-	methionyl-tRNA synthetase
233	 41.60	0	250960..251685	+	241	17227730	-	alr0234	-	hypothetical protein
234	 43.56	0	252003..252833	+	276	17227731	-	alr0235	-	hypothetical protein
235	 42.68	0	252979..254037	+	352	17227732	-	alr0236	-	hypothetical protein
236	 45.05	0	254248..255723	+	491	17227733	-	alr0237	-	leucyl aminopeptidase
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.