IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1730	 35.09	-1	2086870..2087040	-	56	17229227	-	asl1735	-	hypothetical protein
1731	 45.11	0	2087345..2088040	-	231	17229228	-	all1736	-	two-component response regulator
1732	 45.10	0	2088106..2089074	-	322	17229229	-	all1737	-	hypothetical protein
1733	 45.37	0	2089262..2090599	-	445	17229230	-	all1738	-	carboxyl-terminal protease
1734	 35.56	-1	2090868..2091047	-	59	17229231	-	asl1739	-	hypothetical protein
1735	 41.10	0	2091223..2091621	+	132	17229232	-	alr1740	-	hypothetical protein
1736	 47.07	+1	2091858..2094455	-	865	17229233	-	all1741	-	hypothetical protein
1737	 46.64	+1	2094970..2096871	+	633	17229234	dnaK	alr1742	-	molecular chaperone DnaK
1738	 45.25	0	2097006..2097995	-	329	17229235	por	all1743	-	protochlorophyllide oxidoreductase
1739	 42.60	0	2098495..2099649	+	384	17229236	-	alr1744	-	sulfolipid biosynthesis protein
1740	 44.09	0	2099928..2100587	-	219	17229237	-	all1745	-	glutathione transferase
1741	 41.53	0	2100792..2101340	+	182	17229238	-	alr1746	-	hypothetical protein
1742	 40.46	0	2101451..2101801	-	116	17229239	-	all1747	-	hypothetical protein
1743	 35.17	-1	2102233..2103213	-	326	17229240	-	all1748	-	hypothetical protein
1744	 43.59	0	2103488..2103760	-	90	17229241	-	asl1749	-	hypothetical protein
1745	 47.83	+1	2103839..2104900	-	353	17229242	-	all1750	-	hypothetical protein
1746	 41.46	0	2105011..2105982	-	323	17229243	-	all1751	-	hypothetical protein
1747	 31.71	-2	2106313..2106804	+	163	17229244	-	alr1752	-	hypothetical protein
1748	 45.23	0	2107191..2108585	+	464	17229245	-	alr1753	-	hypothetical protein
1749	 40.27	0	2108626..2109216	-	196	17229246	-	all1754	-	hypothetical protein
1750	 40.35	0	2109294..2109692	-	132	17229247	-	all1755	-	hypothetical protein
1751	 39.17	0	2109762..2110583	-	273	17229248	-	all1756	-	hypothetical protein
1752	 41.31	0	2110788..2111690	-	300	17229249	-	all1757	-	cell-division protein
1753	 45.19	0	2111793..2113184	-	463	17229250	-	all1758	-	hypothetical protein
1754	 44.61	0	2113659..2115299	-	546	17229251	ftsY	all1759	-	cell division protein
1755	 44.65	0	2115604..2116239	-	211	17229252	nusB	all1760	-	transcription antitermination protein NusB
1756	 41.17	0	2116428..2117180	-	250	17229253	-	all1761	-	hypothetical protein
1757	 42.47	0	2117622..2118518	-	298	17229254	-	all1762	-	hypothetical protein
1758	 42.47	0	2118650..2119492	-	280	17229255	-	all1763	-	hypothetical protein
1759	 41.78	0	2119743..2120393	-	216	17229256	-	all1764	-	hypothetical protein
1760	 39.61	0	2120426..2120983	-	185	17229257	-	all1765	-	hypothetical protein
1761	 32.04	-2	2121006..2122007	-	333	17229258	-	all1766	-	hypothetical protein
1762	 35.91	-1	2122000..2123007	-	335	17229259	-	all1767	-	hypothetical protein
1763	 38.60	0	2123029..2123997	-	322	17229260	-	all1768	-	hypothetical protein
1764	 38.07	0	2124238..2124933	-	231	17229261	-	all1769	-	hypothetical protein
1765	 39.59	0	2124971..2125993	-	340	17229262	-	all1770	-	hypothetical protein
1766	 43.79	0	2126051..2126767	-	238	17229263	-	all1771	-	hypothetical protein
1767	 42.37	0	2126798..2131300	-	1500	17229264	-	all1772	-	hypothetical protein
1768	 38.95	0	2132044..2132310	-	88	17229265	xseB	asl1773	-	exodeoxyribonuclease VII small subunit
1769	 45.68	0	2132307..2133545	-	412	17229266	xseA	all1774	-	exodeoxyribonuclease VII large subunit
1770	 32.21	-2	2134245..2134511	+	88	17229267	-	asr1775	-	hypothetical protein
1771	 44.93	0	2134602..2136611	-	669	17229268	-	all1776	-	hypothetical protein
1772	 40.52	0	2136614..2136766	-	50	17229269	-	asl1777	-	hypothetical protein
1773	 42.19	0	2136883..2137119	-	78	17229270	-	asl1778	-	hypothetical protein
1774	 32.53	-2	2137716..2138717	+	333	17229271	-	alr1779	-	hypothetical protein
1775	 48.78	+1	2138754..2139491	-	245	17229272	-	all1780	-	cobalt-precorrin-6x reductase
1776	 41.48	0	2139599..2139991	-	130	17229273	-	all1781	-	hypothetical protein
1777	 45.08	0	2140336..2142183	-	615	17229274	-	all1782	-	hypothetical protein
1778	 44.39	0	2142459..2143064	-	201	17229275	-	all1783	-	hypothetical protein
1779	 46.43	+1	2143162..2144085	-	307	17229276	-	all1784	-	ribokinase
1780	 37.80	-1	2144302..2146761	+	819	17229277	-	alr1785	-	hypothetical protein
1781	 42.83	0	2147288..2150509	+	1073	17229278	-	alr1786	-	phosphorylase kinase alpha subunit
1782	 41.35	0	2150636..2151259	-	207	17229279	-	all1787	-	hypothetical protein
1783	 42.92	0	2151563..2153074	+	503	17229280	-	alr1788	-	hypothetical protein
1784	 39.39	0	2153364..2153627	-	87	17229281	-	asl1789	-	hypothetical protein
1785	 38.30	0	2154040..2154381	+	113	17229282	-	alr1790	-	hypothetical protein
1786	 42.12	0	2154558..2154887	+	109	17229283	-	alr1791	-	hypothetical protein
1787	 46.53	+1	2155111..2155830	+	239	17229284	-	alr1792	-	hypothetical protein
1788	 42.27	0	2155893..2156765	+	290	17229285	-	alr1793	-	hypothetical protein
1789	 39.31	0	2156868..2157302	+	144	17229286	-	alr1794	-	hypothetical protein
1790	 40.56	0	2157402..2157650	-	82	17229287	-	asl1795	-	hypothetical protein
1791	 38.53	0	2157748..2158170	+	140	17229288	-	alr1796	-	hypothetical protein
1792	 45.05	0	2158456..2158950	-	164	17229289	-	all1797	-	hypothetical protein
1793	 43.47	0	2159068..2160261	+	397	17229290	queA	alr1798	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1794	 44.17	0	2160348..2161556	+	402	17229291	-	alr1799	-	hypothetical protein
1795	 41.19	0	2161850..2162422	-	190	17229292	-	all1800	-	hypothetical protein
1796	 35.19	-1	2162443..2162604	+	53	17229293	-	asr1801	-	hypothetical protein
1797	 38.05	0	2162719..2164053	-	444	17229294	-	all1802	-	hypothetical protein
1798	 45.31	0	2164274..2165116	+	280	17229295	-	alr1803	-	gamma-tocopherol methyltransferase
1799	 43.19	0	2165159..2169022	-	1287	17229296	-	all1804	-	two-component hybrid sensor and regulator
1800	 46.41	+1	2170389..2171252	+	287	17229297	-	alr1805	-	hypothetical protein
1801	 41.98	0	2171316..2172101	-	261	17229298	-	all1806	-	hypothetical protein
1802	 43.51	0	2172169..2173023	-	284	17229299	-	all1807	-	hypothetical protein
1803	 42.84	0	2173105..2174061	+	318	17229300	-	alr1808	-	hypothetical protein
1804	 40.81	0	2174290..2174757	+	155	17229301	-	alr1809	-	heat shock protein, class I
1805	 40.62	0	2175579..2176607	+	342	17229302	-	alr1810	-	hypothetical protein
1806	 45.58	0	2176667..2178169	-	500	17229303	-	all1811	-	glycerol kinase
1807	 44.18	0	2179610..2179987	-	125	17229304	-	all1812	-	hypothetical protein
1808	 43.21	0	2179968..2180291	-	107	17229305	-	all1813	-	hypothetical protein
1809	 42.81	0	2180444..2181013	-	189	17229306	-	all1814	-	hypothetical protein
1810	 36.62	-1	2181136..2181774	+	212	17229307	-	alr1815	-	hypothetical protein
1811	 36.11	-1	2181764..2182411	-	215	17229308	-	all1816	-	hypothetical protein
1812	 37.78	-1	2182675..2182854	+	59	17229309	-	asr1817	-	hypothetical protein
1813	 31.18	-2	2183008..2183193	+	61	17229310	-	asr1818	-	hypothetical protein
1814	 44.25	0	2183275..2184951	+	558	17229311	-	alr1819	-	hypothetical protein
1815	 38.28	0	2185027..2188056	-	1009	17229312	-	all1820	-	hypothetical protein
1816	 38.32	0	2188125..2188706	+	193	17229313	-	alr1821	-	hypothetical protein
1817	 41.61	0	2188887..2189321	+	144	17229314	-	alr1822	-	hypothetical protein
1818	 42.60	0	2189616..2190716	-	366	17229315	-	all1823	-	sugar ABC transportor, ATP-binding protein
1819	 39.91	0	2190767..2190994	-	75	17229316	-	asl1824	-	hypothetical protein
1820	 33.79	-1	2190994..2191212	-	72	17229317	-	asl1825	-	hypothetical protein
1821	 44.91	0	2191287..2192003	-	238	17229318	-	all1826	-	hypothetical protein
1822	 44.73	0	2192333..2193754	+	473	17229319	icd	alr1827	-	isocitrate dehydrogenase
1823	 41.67	0	2193881..2194144	+	87	17229320	-	asr1828	-	hypothetical protein
1824	 31.31	-2	2194148..2194543	-	131	17229321	-	all1829	-	hypothetical protein
1825	 38.83	0	2194556..2194864	-	102	17229322	-	all1830	-	hypothetical protein
1826	 43.17	0	2195126..2196223	-	365	17229323	-	all1831	-	hypothetical protein
1827	 48.12	+1	2196519..2197958	+	479	17229324	pds	alr1832	-	phytoene desaturase
1828	 49.41	+1	2197942..2198874	+	310	17229325	pys	alr1833	-	phytoene synthase
1829	 47.59	+1	2199462..2200787	+	441	17229326	-	alr1834	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.