IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1684	 46.28	+1	2014740..2018648	+	1302	17229181	cobN	alr1689	-	cobaltochelatase
1685	 45.57	0	2018667..2019941	+	424	17229182	-	alr1690	-	cell wall-binding protein
1686	 43.64	0	2020071..2020526	-	151	17229183	fur	all1691	-	cell wall-binding protein Fur
1687	 43.49	0	2021083..2022333	-	416	17229184	sigC	all1692	-	RNA polymerase sigma factor SigC
1688	 45.78	0	2022849..2023772	-	307	17229185	-	all1693	-	glycerol-3-phosphate dehydrogenase
1689	 47.49	+1	2023824..2024699	-	291	17229186	-	all1694	-	lipoyl synthase
1690	 38.74	0	2024988..2029337	-	1449	17229187	-	all1695	-	hypothetical protein
1691	 45.27	0	2029592..2035591	-	1999	17229188	-	all1696	-	hypothetical protein
1692	 34.32	-1	2036117..2037025	-	302	17229189	-	all1697	-	hypothetical protein
1693	 44.44	0	2037306..2037935	+	209	17229190	-	alr1698	-	hypothetical protein
1694	 46.71	+1	2038005..2038886	-	293	17229191	-	all1699	-	hypothetical protein
1695	 49.61	+1	2039242..2040261	+	339	17229192	-	alr1700	-	hypothetical protein
1696	 46.32	+1	2040372..2041541	-	389	17229193	-	all1701	-	hypothetical protein
1697	 39.16	0	2041836..2042264	-	142	17229194	-	all1702	-	anti-sigma B factor
1698	 41.76	0	2042268..2043941	-	557	17229195	-	all1703	-	two-component response regulator
1699	 42.64	0	2044111..2044830	-	239	17229196	-	all1704	-	two-component response regulator
1700	 43.96	0	2045637..2046389	+	250	17229197	rffM	alr1705	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
1701	 42.92	0	2046690..2047346	+	218	17229198	ftsE	alr1706	-	cell-division ATP-binding protein
1702	 43.84	0	2047354..2048124	-	256	17229199	-	all1707	-	hypothetical protein
1703	 42.79	0	2048401..2049003	-	200	17229200	-	all1708	-	hypothetical protein
1704	 44.00	0	2049503..2050402	+	299	17229201	-	alr1709	-	hypothetical protein
1705	 34.81	-1	2051113..2053827	-	904	17229202	-	all1710	-	hypothetical protein
1706	 42.92	0	2054033..2055232	-	399	17229203	-	all1711	-	hypothetical protein
1707	 45.98	0	2056007..2058568	+	853	17229204	-	alr1712	-	hypothetical protein
1708	 37.64	-1	2059272..2059619	+	115	17229205	-	alr1713	-	hypothetical protein
1709	 38.83	0	2059642..2059914	+	90	17229206	-	asr1714	-	hypothetical protein
1710	 40.81	0	2060380..2061342	+	320	17229207	-	alr1715	-	hypothetical protein
1711	 45.15	0	2061373..2065374	-	1333	17229208	-	all1716	-	two-component hybrid sensor and regulator
1712	 44.25	0	2066137..2068170	-	677	17229209	ligA	all1717	-	NAD-dependent DNA ligase LigA
1713	 48.78	+1	2068785..2069153	+	122	17229210	-	alr1718	-	hypothetical protein
1714	 39.94	0	2069594..2069911	-	105	17229211	-	all1719	-	hypothetical protein
1715	 38.71	0	2070004..2070282	-	92	17229212	-	asl1720	-	hypothetical protein
1716	 36.30	-1	2070435..2071007	+	190	17229213	-	alr1721	-	transcriptional regulator
1717	 42.95	0	2071069..2072004	+	311	17229214	-	alr1722	-	short chain dehydrogenase
1718	 46.85	+1	2072201..2072962	-	253	17229215	-	all1723	-	hypothetical protein
1719	 43.30	0	2073264..2074667	-	467	17229216	-	all1724	-	hypothetical protein
1720	 37.96	0	2074992..2075402	-	136	17229217	-	all1725	-	hypothetical protein
1721	 40.61	0	2075821..2076342	+	173	17229218	-	alr1726	-	transposase
1722	 39.18	0	2076419..2076931	+	170	17229219	-	alr1727	-	transposase
1723	 45.96	0	2077564..2078901	+	445	17229220	-	alr1728	-	hypothetical protein
1724	 40.47	0	2079166..2079810	-	214	17229221	-	all1729	-	hypothetical protein
1725	 45.94	0	2080295..2081872	-	525	17229222	-	all1730	-	hypothetical protein
1726	 45.85	0	2082221..2084497	-	758	17229223	-	all1731	-	hypothetical protein
1727	 47.90	+1	2085135..2085491	-	118	17229224	-	all1732	-	hypothetical protein
1728	 48.29	+1	2085574..2085894	+	106	17229225	-	alr1733	-	hypothetical protein
1729	 41.13	0	2086395..2086676	+	93	17229226	-	asr1734	-	hypothetical protein
1730	 35.09	-1	2086870..2087040	-	56	17229227	-	asl1735	-	hypothetical protein
1731	 45.11	0	2087345..2088040	-	231	17229228	-	all1736	-	two-component response regulator
1732	 45.10	0	2088106..2089074	-	322	17229229	-	all1737	-	hypothetical protein
1733	 45.37	0	2089262..2090599	-	445	17229230	-	all1738	-	carboxyl-terminal protease
1734	 35.56	-1	2090868..2091047	-	59	17229231	-	asl1739	-	hypothetical protein
1735	 41.10	0	2091223..2091621	+	132	17229232	-	alr1740	-	hypothetical protein
1736	 47.07	+1	2091858..2094455	-	865	17229233	-	all1741	-	hypothetical protein
1737	 46.64	+1	2094970..2096871	+	633	17229234	dnaK	alr1742	-	molecular chaperone DnaK
1738	 45.25	0	2097006..2097995	-	329	17229235	por	all1743	-	protochlorophyllide oxidoreductase
1739	 42.60	0	2098495..2099649	+	384	17229236	-	alr1744	-	sulfolipid biosynthesis protein
1740	 44.09	0	2099928..2100587	-	219	17229237	-	all1745	-	glutathione transferase
1741	 41.53	0	2100792..2101340	+	182	17229238	-	alr1746	-	hypothetical protein
1742	 40.46	0	2101451..2101801	-	116	17229239	-	all1747	-	hypothetical protein
1743	 35.17	-1	2102233..2103213	-	326	17229240	-	all1748	-	hypothetical protein
1744	 43.59	0	2103488..2103760	-	90	17229241	-	asl1749	-	hypothetical protein
1745	 47.83	+1	2103839..2104900	-	353	17229242	-	all1750	-	hypothetical protein
1746	 41.46	0	2105011..2105982	-	323	17229243	-	all1751	-	hypothetical protein
1747	 31.71	-2	2106313..2106804	+	163	17229244	-	alr1752	-	hypothetical protein
1748	 45.23	0	2107191..2108585	+	464	17229245	-	alr1753	-	hypothetical protein
1749	 40.27	0	2108626..2109216	-	196	17229246	-	all1754	-	hypothetical protein
1750	 40.35	0	2109294..2109692	-	132	17229247	-	all1755	-	hypothetical protein
1751	 39.17	0	2109762..2110583	-	273	17229248	-	all1756	-	hypothetical protein
1752	 41.31	0	2110788..2111690	-	300	17229249	-	all1757	-	cell-division protein
1753	 45.19	0	2111793..2113184	-	463	17229250	-	all1758	-	hypothetical protein
1754	 44.61	0	2113659..2115299	-	546	17229251	ftsY	all1759	-	cell division protein
1755	 44.65	0	2115604..2116239	-	211	17229252	nusB	all1760	-	transcription antitermination protein NusB
1756	 41.17	0	2116428..2117180	-	250	17229253	-	all1761	-	hypothetical protein
1757	 42.47	0	2117622..2118518	-	298	17229254	-	all1762	-	hypothetical protein
1758	 42.47	0	2118650..2119492	-	280	17229255	-	all1763	-	hypothetical protein
1759	 41.78	0	2119743..2120393	-	216	17229256	-	all1764	-	hypothetical protein
1760	 39.61	0	2120426..2120983	-	185	17229257	-	all1765	-	hypothetical protein
1761	 32.04	-2	2121006..2122007	-	333	17229258	-	all1766	-	hypothetical protein
1762	 35.91	-1	2122000..2123007	-	335	17229259	-	all1767	-	hypothetical protein
1763	 38.60	0	2123029..2123997	-	322	17229260	-	all1768	-	hypothetical protein
1764	 38.07	0	2124238..2124933	-	231	17229261	-	all1769	-	hypothetical protein
1765	 39.59	0	2124971..2125993	-	340	17229262	-	all1770	-	hypothetical protein
1766	 43.79	0	2126051..2126767	-	238	17229263	-	all1771	-	hypothetical protein
1767	 42.37	0	2126798..2131300	-	1500	17229264	-	all1772	-	hypothetical protein
1768	 38.95	0	2132044..2132310	-	88	17229265	xseB	asl1773	-	exodeoxyribonuclease VII small subunit
1769	 45.68	0	2132307..2133545	-	412	17229266	xseA	all1774	-	exodeoxyribonuclease VII large subunit
1770	 32.21	-2	2134245..2134511	+	88	17229267	-	asr1775	-	hypothetical protein
1771	 44.93	0	2134602..2136611	-	669	17229268	-	all1776	-	hypothetical protein
1772	 40.52	0	2136614..2136766	-	50	17229269	-	asl1777	-	hypothetical protein
1773	 42.19	0	2136883..2137119	-	78	17229270	-	asl1778	-	hypothetical protein
1774	 32.53	-2	2137716..2138717	+	333	17229271	-	alr1779	-	hypothetical protein
1775	 48.78	+1	2138754..2139491	-	245	17229272	-	all1780	-	cobalt-precorrin-6x reductase
1776	 41.48	0	2139599..2139991	-	130	17229273	-	all1781	-	hypothetical protein
1777	 45.08	0	2140336..2142183	-	615	17229274	-	all1782	-	hypothetical protein
1778	 44.39	0	2142459..2143064	-	201	17229275	-	all1783	-	hypothetical protein
1779	 46.43	+1	2143162..2144085	-	307	17229276	-	all1784	-	ribokinase
1780	 37.80	-1	2144302..2146761	+	819	17229277	-	alr1785	-	hypothetical protein
1781	 42.83	0	2147288..2150509	+	1073	17229278	-	alr1786	-	phosphorylase kinase alpha subunit
1782	 41.35	0	2150636..2151259	-	207	17229279	-	all1787	-	hypothetical protein
1783	 42.92	0	2151563..2153074	+	503	17229280	-	alr1788	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.