IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1646	 33.81	-1	1969530..1970363	-	277	17229143	-	all1651	-	transcriptional regulator
1647	 39.87	0	1972329..1973108	+	259	17229144	-	alr1652	-	hypothetical protein
1648	 40.82	0	1973156..1974103	+	315	17229145	-	alr1653	-	hypothetical protein
1649	 41.57	0	1974360..1975343	+	327	17229146	-	alr1654	-	hypothetical protein
1650	 43.84	0	1975441..1976973	+	510	17229147	-	alr1655	-	hypothetical protein
1651	 42.38	0	1977239..1980343	+	1034	17229148	-	alr1656	-	hypothetical protein
1652	 34.98	-1	1980447..1980689	-	80	17229149	-	asl1657	-	transposase
1653	 39.72	0	1980869..1981150	-	93	17229150	-	asl1658	-	hypothetical protein
1654	 41.65	0	1981185..1982699	+	504	17229151	-	alr1659	-	hypothetical protein
1655	 44.88	0	1982833..1983135	-	100	17229152	-	all1660	-	hypothetical protein
1656	 40.51	0	1983278..1983514	+	78	17229153	-	asr1661	-	hypothetical protein
1657	 46.07	0	1983540..1983806	+	88	17229154	-	asr1662	-	hypothetical protein
1658	 47.02	+1	1983934..1985424	-	496	17229155	murE	all1663	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1659	 40.97	0	1985457..1985744	-	95	17229156	-	asl1664	-	hypothetical protein
1660	 41.67	0	1986107..1987522	+	471	17229157	-	alr1665	-	two-component sensor histidine kinase
1661	 39.14	0	1987791..1989254	+	487	17229158	-	alr1666	-	hypothetical protein
1662	 41.67	0	1989466..1989705	+	79	17229159	-	asr1667	-	hypothetical protein
1663	 38.79	0	1990621..1991904	+	427	17229160	-	alr1668	-	hypothetical protein
1664	 43.04	0	1991928..1992638	+	236	17229161	-	alr1669	-	hypothetical protein
1665	 39.94	0	1992717..1993064	-	115	17229162	-	all1670	-	transcriptional regulator
1666	 45.75	0	1993265..1993417	-	50	17229163	-	asl1671	-	hypothetical protein
1667	 35.56	-1	1993588..1994037	-	149	17229164	-	all1672	-	hypothetical protein
1668	 35.68	-1	1994820..1996223	-	467	17229165	-	all1673	-	proton extrusion protein PcxA
1669	 44.07	0	1996311..1998554	+	747	17229166	-	alr1674	-	hypothetical protein
1670	 46.19	+1	1998775..1999443	+	222	17229167	-	alr1675	-	methionine sulfoxide reductase A
1671	 38.98	0	1999584..1999760	-	58	17229168	-	asl1676	-	hypothetical protein
1672	 48.64	+1	2000048..2000890	+	280	17229169	-	alr1677	-	hypothetical protein
1673	 45.38	0	2000949..2002442	-	497	17229170	-	all1678	-	sodium/solute symporter
1674	 36.08	-1	2002635..2002889	-	84	17229171	-	asl1679	-	hypothetical protein
1675	 32.44	-2	2003284..2004402	+	372	17229172	-	alr1680	-	hypothetical protein
1676	 42.71	0	2004495..2005496	-	333	17229173	pyrB	all1681	-	aspartate carbamoyltransferase catalytic subunit
1677	 44.49	0	2005614..2007011	-	465	17229174	-	all1682	-	hypothetical protein
1678	 45.63	0	2007711..2008889	-	392	17229175	-	all1683	-	phosphoserine aminotransferase
1679	 42.88	0	2008956..2010149	-	397	17229176	-	all1684	-	hypothetical protein
1680	 41.10	0	2010187..2010585	+	132	17229177	-	alr1685	-	transposase
1681	 40.68	0	2010677..2011588	-	303	17229178	-	all1686	-	hypothetical protein
1682	 44.18	0	2011721..2012605	+	294	17229179	-	alr1687	-	hypothetical protein
1683	 41.21	0	2012625..2014655	-	676	17229180	-	all1688	-	two-component sensor histidine kinase
1684	 46.28	+1	2014740..2018648	+	1302	17229181	cobN	alr1689	-	cobaltochelatase
1685	 45.57	0	2018667..2019941	+	424	17229182	-	alr1690	-	cell wall-binding protein
1686	 43.64	0	2020071..2020526	-	151	17229183	fur	all1691	-	cell wall-binding protein Fur
1687	 43.49	0	2021083..2022333	-	416	17229184	sigC	all1692	-	RNA polymerase sigma factor SigC
1688	 45.78	0	2022849..2023772	-	307	17229185	-	all1693	-	glycerol-3-phosphate dehydrogenase
1689	 47.49	+1	2023824..2024699	-	291	17229186	-	all1694	-	lipoyl synthase
1690	 38.74	0	2024988..2029337	-	1449	17229187	-	all1695	-	hypothetical protein
1691	 45.27	0	2029592..2035591	-	1999	17229188	-	all1696	-	hypothetical protein
1692	 34.32	-1	2036117..2037025	-	302	17229189	-	all1697	-	hypothetical protein
1693	 44.44	0	2037306..2037935	+	209	17229190	-	alr1698	-	hypothetical protein
1694	 46.71	+1	2038005..2038886	-	293	17229191	-	all1699	-	hypothetical protein
1695	 49.61	+1	2039242..2040261	+	339	17229192	-	alr1700	-	hypothetical protein
1696	 46.32	+1	2040372..2041541	-	389	17229193	-	all1701	-	hypothetical protein
1697	 39.16	0	2041836..2042264	-	142	17229194	-	all1702	-	anti-sigma B factor
1698	 41.76	0	2042268..2043941	-	557	17229195	-	all1703	-	two-component response regulator
1699	 42.64	0	2044111..2044830	-	239	17229196	-	all1704	-	two-component response regulator
1700	 43.96	0	2045637..2046389	+	250	17229197	rffM	alr1705	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
1701	 42.92	0	2046690..2047346	+	218	17229198	ftsE	alr1706	-	cell-division ATP-binding protein
1702	 43.84	0	2047354..2048124	-	256	17229199	-	all1707	-	hypothetical protein
1703	 42.79	0	2048401..2049003	-	200	17229200	-	all1708	-	hypothetical protein
1704	 44.00	0	2049503..2050402	+	299	17229201	-	alr1709	-	hypothetical protein
1705	 34.81	-1	2051113..2053827	-	904	17229202	-	all1710	-	hypothetical protein
1706	 42.92	0	2054033..2055232	-	399	17229203	-	all1711	-	hypothetical protein
1707	 45.98	0	2056007..2058568	+	853	17229204	-	alr1712	-	hypothetical protein
1708	 37.64	-1	2059272..2059619	+	115	17229205	-	alr1713	-	hypothetical protein
1709	 38.83	0	2059642..2059914	+	90	17229206	-	asr1714	-	hypothetical protein
1710	 40.81	0	2060380..2061342	+	320	17229207	-	alr1715	-	hypothetical protein
1711	 45.15	0	2061373..2065374	-	1333	17229208	-	all1716	-	two-component hybrid sensor and regulator
1712	 44.25	0	2066137..2068170	-	677	17229209	ligA	all1717	-	NAD-dependent DNA ligase LigA
1713	 48.78	+1	2068785..2069153	+	122	17229210	-	alr1718	-	hypothetical protein
1714	 39.94	0	2069594..2069911	-	105	17229211	-	all1719	-	hypothetical protein
1715	 38.71	0	2070004..2070282	-	92	17229212	-	asl1720	-	hypothetical protein
1716	 36.30	-1	2070435..2071007	+	190	17229213	-	alr1721	-	transcriptional regulator
1717	 42.95	0	2071069..2072004	+	311	17229214	-	alr1722	-	short chain dehydrogenase
1718	 46.85	+1	2072201..2072962	-	253	17229215	-	all1723	-	hypothetical protein
1719	 43.30	0	2073264..2074667	-	467	17229216	-	all1724	-	hypothetical protein
1720	 37.96	0	2074992..2075402	-	136	17229217	-	all1725	-	hypothetical protein
1721	 40.61	0	2075821..2076342	+	173	17229218	-	alr1726	-	transposase
1722	 39.18	0	2076419..2076931	+	170	17229219	-	alr1727	-	transposase
1723	 45.96	0	2077564..2078901	+	445	17229220	-	alr1728	-	hypothetical protein
1724	 40.47	0	2079166..2079810	-	214	17229221	-	all1729	-	hypothetical protein
1725	 45.94	0	2080295..2081872	-	525	17229222	-	all1730	-	hypothetical protein
1726	 45.85	0	2082221..2084497	-	758	17229223	-	all1731	-	hypothetical protein
1727	 47.90	+1	2085135..2085491	-	118	17229224	-	all1732	-	hypothetical protein
1728	 48.29	+1	2085574..2085894	+	106	17229225	-	alr1733	-	hypothetical protein
1729	 41.13	0	2086395..2086676	+	93	17229226	-	asr1734	-	hypothetical protein
1730	 35.09	-1	2086870..2087040	-	56	17229227	-	asl1735	-	hypothetical protein
1731	 45.11	0	2087345..2088040	-	231	17229228	-	all1736	-	two-component response regulator
1732	 45.10	0	2088106..2089074	-	322	17229229	-	all1737	-	hypothetical protein
1733	 45.37	0	2089262..2090599	-	445	17229230	-	all1738	-	carboxyl-terminal protease
1734	 35.56	-1	2090868..2091047	-	59	17229231	-	asl1739	-	hypothetical protein
1735	 41.10	0	2091223..2091621	+	132	17229232	-	alr1740	-	hypothetical protein
1736	 47.07	+1	2091858..2094455	-	865	17229233	-	all1741	-	hypothetical protein
1737	 46.64	+1	2094970..2096871	+	633	17229234	dnaK	alr1742	-	molecular chaperone DnaK
1738	 45.25	0	2097006..2097995	-	329	17229235	por	all1743	-	protochlorophyllide oxidoreductase
1739	 42.60	0	2098495..2099649	+	384	17229236	-	alr1744	-	sulfolipid biosynthesis protein
1740	 44.09	0	2099928..2100587	-	219	17229237	-	all1745	-	glutathione transferase
1741	 41.53	0	2100792..2101340	+	182	17229238	-	alr1746	-	hypothetical protein
1742	 40.46	0	2101451..2101801	-	116	17229239	-	all1747	-	hypothetical protein
1743	 35.17	-1	2102233..2103213	-	326	17229240	-	all1748	-	hypothetical protein
1744	 43.59	0	2103488..2103760	-	90	17229241	-	asl1749	-	hypothetical protein
1745	 47.83	+1	2103839..2104900	-	353	17229242	-	all1750	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.