IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1588	 47.33	+1	1865536..1866321	+	261	17229085	-	alr1593	-	hypothetical protein
1589	 48.03	+1	1867058..1870453	+	1131	17229086	rpoB	alr1594	-	DNA-directed RNA polymerase subunit beta
1590	 46.59	+1	1870588..1872465	+	625	17229087	rpoC1	alr1595	-	DNA-directed RNA polymerase subunit gamma
1591	 47.94	+1	1872581..1876633	+	1350	17229088	rpoC2	alr1596	-	DNA-directed RNA polymerase subunit beta'
1592	 40.46	0	1876897..1877976	-	359	17229089	-	all1597	-	omega-3 fatty acid desaturase
1593	 40.65	0	1878346..1879398	-	350	17229090	desA	all1598	-	phosphatidylcholine desaturase
1594	 45.30	0	1879629..1880447	-	272	17229091	desC	all1599	-	delta-9 desaturase
1595	 48.32	+1	1880483..1881763	+	426	17229092	-	alr1600	-	hypothetical protein
1596	 45.90	0	1881770..1882963	-	397	17229093	-	all1601	-	hypothetical protein
1597	 47.30	+1	1883375..1884097	+	240	17229094	devB	alr1602	-	6-phosphogluconolactonase
1598	 51.03	+2	1884267..1885136	+	289	17229095	-	alr1603	-	hypothetical protein
1599	 45.43	0	1885289..1886032	+	247	17229096	-	alr1604	-	hypothetical protein
1600	 45.89	0	1886166..1887320	+	384	17229097	-	alr1605	-	hypothetical protein
1601	 43.60	0	1887484..1888779	-	431	17229098	-	all1606	-	hypothetical protein
1602	 40.69	0	1888855..1889493	+	212	17229099	-	alr1607	-	hypothetical protein
1603	 37.72	-1	1889561..1890289	-	242	17229100	-	all1608	-	transposase
1604	 34.97	-1	1890543..1891763	+	406	17229101	-	alr1609	-	transposase
1605	 43.89	0	1892175..1892714	-	179	17229102	-	all1610	-	hypothetical protein
1606	 47.06	+1	1892945..1893199	+	84	17229103	-	asr1611	-	hypothetical protein
1607	 44.11	0	1893438..1894235	+	265	17229104	-	alr1612	-	hypothetical protein
1608	 40.71	0	1894493..1895251	+	252	17229105	-	alr1613	-	hypothetical protein
1609	 43.96	0	1895200..1897881	+	893	17229106	-	alr1614	-	toxin secretion ABC transporter ATP-binding protein
1610	 42.21	0	1898218..1902564	+	1448	17229107	-	alr1615	-	subtilase family protein
1611	 42.54	0	1902896..1903579	-	227	17229108	-	all1616	-	hypothetical protein
1612	 46.81	+1	1903669..1905753	-	694	17229109	-	all1617	-	hypothetical protein
1613	 38.77	0	1905965..1906534	-	189	17229110	-	all1618	-	hypothetical protein
1614	 46.69	+1	1906948..1907943	+	331	17229111	-	alr1619	-	ATP-binding protein of ABC transporter
1615	 41.33	0	1907944..1908756	+	270	17229112	-	alr1620	-	permease protein of ABC transporter
1616	 44.31	0	1908825..1910528	+	567	17229113	-	alr1621	-	hypothetical protein
1617	 39.33	0	1910570..1911169	+	199	17229114	-	alr1622	-	hypothetical protein
1618	 41.52	0	1911264..1912118	+	284	17229115	purU	alr1623	-	formyltetrahydrofolate deformylase
1619	 44.34	0	1912358..1912666	+	102	17229116	-	alr1624	-	hypothetical protein
1620	 40.85	0	1912907..1918270	-	1787	17229117	-	all1625	-	serine/threonine kinase protein
1621	 42.87	0	1918560..1921223	-	887	17229118	-	all1626	-	hypothetical protein
1622	 45.71	0	1922149..1924410	+	753	17229119	-	alr1627	-	cation-transporting ATPase
1623	 43.26	0	1924422..1924985	+	187	17229120	-	alr1628	-	hypothetical protein
1624	 36.25	-1	1925125..1925535	+	136	17229121	-	alr1629	-	transcriptional regulator
1625	 33.85	-1	1925875..1926261	-	128	17229122	-	all1630	-	hypothetical protein
1626	 45.19	0	1926368..1926907	+	179	17229123	-	alr1631	-	hypothetical protein
1627	 39.17	0	1927014..1927133	-	39	17229124	-	asl1632	-	hypothetical protein
1628	 44.61	0	1927916..1929334	+	472	17229125	-	alr1633	-	sulfate permease
1629	 36.46	-1	1929376..1930239	+	287	17229126	-	alr1634	-	hypothetical protein
1630	 47.30	+1	1930270..1931973	+	567	17229127	-	alr1635	-	sulfate permease
1631	 44.14	0	1932370..1936515	-	1381	17229128	-	all1636	-	regulatory protein
1632	 35.20	-1	1937098..1937418	+	106	17229129	-	alr1637	-	hypothetical protein
1633	 43.98	0	1937534..1938031	-	165	17229130	moaE	all1638	-	molybdopterin converting factor, subunit 2
1634	 39.18	0	1938254..1939297	-	347	17229131	-	all1639	-	two-component hybrid sensor and regulator
1635	 41.61	0	1939687..1940145	-	152	17229132	-	all1640	-	two-component response regulator
1636	 37.02	-1	1941108..1942274	-	388	17229133	-	all1641	-	hypothetical protein
1637	 43.68	0	1942314..1944005	-	563	17229134	-	all1642	-	hypothetical protein
1638	 39.93	0	1944059..1948864	-	1601	17229135	-	all1643	-	hypothetical protein
1639	 34.87	-1	1948917..1950674	-	585	17229136	-	all1644	-	hypothetical protein
1640	 41.21	0	1950938..1951699	-	253	17229137	-	all1645	-	hypothetical protein
1641	 44.22	0	1951710..1955501	-	1263	17229138	hglE	all1646	-	heterocyst glycolipid synthase
1642	 41.43	0	1956111..1959074	-	987	17229139	-	all1647	-	peptide synthetase
1643	 44.00	0	1959320..1964083	-	1587	17229140	-	all1648	-	hypothetical protein
1644	 43.96	0	1964098..1968810	-	1570	17229141	-	all1649	-	hypothetical protein
1645	 34.11	-1	1969135..1969392	-	85	17229142	-	asl1650	-	hypothetical protein
1646	 33.81	-1	1969530..1970363	-	277	17229143	-	all1651	-	transcriptional regulator
1647	 39.87	0	1972329..1973108	+	259	17229144	-	alr1652	-	hypothetical protein
1648	 40.82	0	1973156..1974103	+	315	17229145	-	alr1653	-	hypothetical protein
1649	 41.57	0	1974360..1975343	+	327	17229146	-	alr1654	-	hypothetical protein
1650	 43.84	0	1975441..1976973	+	510	17229147	-	alr1655	-	hypothetical protein
1651	 42.38	0	1977239..1980343	+	1034	17229148	-	alr1656	-	hypothetical protein
1652	 34.98	-1	1980447..1980689	-	80	17229149	-	asl1657	-	transposase
1653	 39.72	0	1980869..1981150	-	93	17229150	-	asl1658	-	hypothetical protein
1654	 41.65	0	1981185..1982699	+	504	17229151	-	alr1659	-	hypothetical protein
1655	 44.88	0	1982833..1983135	-	100	17229152	-	all1660	-	hypothetical protein
1656	 40.51	0	1983278..1983514	+	78	17229153	-	asr1661	-	hypothetical protein
1657	 46.07	0	1983540..1983806	+	88	17229154	-	asr1662	-	hypothetical protein
1658	 47.02	+1	1983934..1985424	-	496	17229155	murE	all1663	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1659	 40.97	0	1985457..1985744	-	95	17229156	-	asl1664	-	hypothetical protein
1660	 41.67	0	1986107..1987522	+	471	17229157	-	alr1665	-	two-component sensor histidine kinase
1661	 39.14	0	1987791..1989254	+	487	17229158	-	alr1666	-	hypothetical protein
1662	 41.67	0	1989466..1989705	+	79	17229159	-	asr1667	-	hypothetical protein
1663	 38.79	0	1990621..1991904	+	427	17229160	-	alr1668	-	hypothetical protein
1664	 43.04	0	1991928..1992638	+	236	17229161	-	alr1669	-	hypothetical protein
1665	 39.94	0	1992717..1993064	-	115	17229162	-	all1670	-	transcriptional regulator
1666	 45.75	0	1993265..1993417	-	50	17229163	-	asl1671	-	hypothetical protein
1667	 35.56	-1	1993588..1994037	-	149	17229164	-	all1672	-	hypothetical protein
1668	 35.68	-1	1994820..1996223	-	467	17229165	-	all1673	-	proton extrusion protein PcxA
1669	 44.07	0	1996311..1998554	+	747	17229166	-	alr1674	-	hypothetical protein
1670	 46.19	+1	1998775..1999443	+	222	17229167	-	alr1675	-	methionine sulfoxide reductase A
1671	 38.98	0	1999584..1999760	-	58	17229168	-	asl1676	-	hypothetical protein
1672	 48.64	+1	2000048..2000890	+	280	17229169	-	alr1677	-	hypothetical protein
1673	 45.38	0	2000949..2002442	-	497	17229170	-	all1678	-	sodium/solute symporter
1674	 36.08	-1	2002635..2002889	-	84	17229171	-	asl1679	-	hypothetical protein
1675	 32.44	-2	2003284..2004402	+	372	17229172	-	alr1680	-	hypothetical protein
1676	 42.71	0	2004495..2005496	-	333	17229173	pyrB	all1681	-	aspartate carbamoyltransferase catalytic subunit
1677	 44.49	0	2005614..2007011	-	465	17229174	-	all1682	-	hypothetical protein
1678	 45.63	0	2007711..2008889	-	392	17229175	-	all1683	-	phosphoserine aminotransferase
1679	 42.88	0	2008956..2010149	-	397	17229176	-	all1684	-	hypothetical protein
1680	 41.10	0	2010187..2010585	+	132	17229177	-	alr1685	-	transposase
1681	 40.68	0	2010677..2011588	-	303	17229178	-	all1686	-	hypothetical protein
1682	 44.18	0	2011721..2012605	+	294	17229179	-	alr1687	-	hypothetical protein
1683	 41.21	0	2012625..2014655	-	676	17229180	-	all1688	-	two-component sensor histidine kinase
1684	 46.28	+1	2014740..2018648	+	1302	17229181	cobN	alr1689	-	cobaltochelatase
1685	 45.57	0	2018667..2019941	+	424	17229182	-	alr1690	-	cell wall-binding protein
1686	 43.64	0	2020071..2020526	-	151	17229183	fur	all1691	-	cell wall-binding protein Fur
1687	 43.49	0	2021083..2022333	-	416	17229184	sigC	all1692	-	RNA polymerase sigma factor SigC
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.