IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1454	 47.80	+1	1715535..1716737	-	400	17228951	nifS	all1457	-	nitrogenase cofactor synthesis protein
1455	 41.17	0	1716847..1718391	+	514	17228952	xisF	alr1459	-	fdxN element site-specific recombinase
1456	 44.67	0	1718608..1719189	+	193	17228953	-	alr1460	-	hypothetical protein
1457	 40.10	0	1719363..1719776	+	137	17228954	xisH	alr1461	-	fdxN element excision controlling factor protein
1458	 34.52	-1	1719764..1720099	+	111	17228955	xisI	alr1462	-	fdxN element excision controlling factor protein
1459	 40.66	0	1721072..1722886	-	604	17228956	-	all1463	-	hypothetical protein
1460	 38.74	0	1723260..1724165	-	301	17228957	-	all1464	-	hypothetical protein
1461	 42.20	0	1724325..1726310	-	661	17228958	-	all1465	-	hypothetical protein
1462	 34.81	-1	1726385..1727734	-	449	17228959	-	all1466	-	kinesin light chain
1463	 40.46	0	1728408..1729151	-	247	17228960	-	all1467	-	hypothetical protein
1464	 39.66	0	1729649..1731655	+	668	17228961	-	alr1468	-	hypothetical protein
1465	 43.48	0	1732539..1732745	+	68	17228962	-	asr1469	-	hypothetical protein
1466	 36.37	-1	1733488..1734309	+	273	17228963	-	alr1470	-	hypothetical protein
1467	 31.94	-2	1734362..1735078	-	238	17228964	-	all1471	-	hypothetical protein
1468	 36.17	-1	1735088..1736143	-	351	17228965	-	all1472	-	hypothetical protein
1469	 38.07	0	1736145..1736672	-	175	17228966	-	all1473	-	hypothetical protein
1470	 41.22	0	1736660..1737673	-	337	17228967	-	all1474	-	hypothetical protein
1471	 38.40	0	1737678..1738604	-	308	17228968	-	all1475	-	hypothetical protein
1472	 31.36	-2	1738620..1739075	-	151	17228969	-	all1476	-	hypothetical protein
1473	 41.23	0	1739072..1740376	-	434	17228970	-	all1477	-	hypothetical protein
1474	 43.35	0	1740373..1741131	-	252	17228971	-	all1478	-	hypothetical protein
1475	 40.14	0	1741128..1743494	-	788	17228972	-	all1479	-	hypothetical protein
1476	 33.05	-2	1743700..1744053	-	117	17228973	-	all1480	-	hypothetical protein
1477	 34.62	-1	1744669..1744824	-	51	17228974	-	asl1481	-	hypothetical protein
1478	 44.09	0	1744833..1745966	+	377	17228975	-	alr1482	-	hypothetical protein
1479	 45.49	0	1746056..1748482	-	808	17228976	-	all1483	-	putative phosphoketolase
1480	 42.22	0	1748690..1749139	-	149	17228977	-	all1484	-	hypothetical protein
1481	 34.28	-1	1749347..1749664	+	105	17228978	-	alr1485	-	hypothetical protein
1482	 39.89	0	1749708..1749890	+	60	17228979	-	asr1486	-	hypothetical protein
1483	 47.12	+1	1750062..1750373	-	103	17228980	-	all1487	-	hypothetical protein
1484	 48.63	+1	1750370..1751317	-	315	17228981	dnaJ	all1488	-	chaperone protein
1485	 46.85	+1	1751357..1752214	-	285	17228982	-	all1489	-	hypothetical protein
1486	 45.72	0	1753102..1755054	+	650	17228983	-	alr1490	-	ABC transporter ATP-binding component
1487	 46.61	+1	1755051..1756157	+	368	17228984	-	alr1491	-	hypothetical protein
1488	 35.87	-1	1756560..1758017	+	485	17228985	-	alr1492	-	hypothetical protein
1489	 39.62	0	1758210..1758527	+	105	17228986	-	alr1493	-	hypothetical protein
1490	 44.58	0	1758766..1759014	+	82	17228987	-	asr1494	-	hypothetical protein
1491	 41.79	0	1759491..1759880	-	129	17228988	vapC	all1495	-	virulence associated protein C
1492	 41.90	0	1759870..1760079	-	69	17228989	-	asl1496	-	hypothetical protein
1493	 39.08	0	1760342..1760602	-	86	17228990	-	asl1497	-	hypothetical protein
1494	 42.72	0	1760814..1761431	+	205	17228991	-	alr1498	-	hypothetical protein
1495	 44.33	0	1761605..1762177	+	190	17228992	-	alr1499	-	hypothetical protein
1496	 41.31	0	1762466..1763593	+	375	17228993	-	alr1500	-	hypothetical protein
1497	 46.05	0	1763600..1764904	+	434	17228994	-	alr1501	-	hypothetical protein
1498	 35.06	-1	1764996..1765226	-	76	17228995	-	asl1502	-	hypothetical protein
1499	 48.33	+1	1765403..1765942	-	179	17228996	-	all1503	-	hypothetical protein
1500	 42.02	0	1765992..1766417	-	141	17228997	-	all1504	-	hypothetical protein
1501	 46.93	+1	1766957..1768471	+	504	17228998	-	alr1505	-	hypothetical protein
1502	 47.84	+1	1768468..1769763	+	431	17228999	-	alr1506	-	hypothetical protein
1503	 44.87	0	1769760..1770461	+	233	17229000	-	alr1507	-	ATP-binding protein of ABC transporter
1504	 46.11	+1	1770509..1771048	-	179	17229001	-	all1508	-	hypothetical protein
1505	 42.14	0	1771076..1772074	-	332	17229002	-	all1509	-	hypothetical protein
1506	 39.92	0	1772087..1772329	-	80	17229003	-	asl1510	-	hypothetical protein
1507	 49.74	+1	1772396..1772773	-	125	17229004	-	all1511	-	hypothetical protein
1508	 50.84	+2	1773260..1773796	-	178	17229005	petC	all1512	-	cytochrome b6-f complex iron-sulfur subunit
1509	 44.13	0	1773974..1774186	-	70	17229006	-	asl1513	-	hypothetical protein
1510	 47.94	+1	1774486..1774971	+	161	17229007	-	alr1514	-	hypothetical protein
1511	 45.92	0	1775021..1775632	-	203	17229008	-	all1515	-	hypothetical protein
1512	 44.61	0	1776670..1778097	-	475	17229009	nifB	all1517	-	nitrogen fixation protein
1513	 33.33	-2	1779033..1779221	-	62	17229010	-	asl1518	-	hypothetical protein
1514	 44.88	0	1779326..1780693	+	455	17229011	-	alr1519	-	amino acid transporter
1515	 44.09	0	1780722..1781381	+	219	17229012	-	alr1520	-	hypothetical protein
1516	 42.71	0	1781697..1783103	+	468	17229013	-	alr1521	-	hypothetical protein
1517	 45.09	0	1783136..1783909	-	257	17229014	panB	all1522	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1518	 44.96	0	1783994..1785154	-	386	17229015	-	all1523	-	hypothetical protein
1519	 48.71	+1	1785970..1787400	+	476	17229016	rbcL	alr1524	-	ribulose bisophosphate carboxylase
1520	 45.61	0	1787495..1787893	+	132	17229017	-	alr1525	-	hypothetical protein
1521	 43.94	0	1787950..1788279	+	109	17229018	rbcS	alr1526	-	ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
1522	 28.36	-2	1788441..1790168	+	575	17229019	-	alr1527	-	hypothetical protein
1523	 43.39	0	1790247..1791071	+	274	17229020	-	alr1528	-	aminoglycoside N3'-acetyltransferase
1524	 36.71	-1	1791068..1791688	+	206	17229021	-	alr1529	-	hypothetical protein
1525	 33.06	-2	1791893..1792252	-	119	17229022	-	all1530	-	hypothetical protein
1526	 45.96	0	1792330..1793517	+	395	17229023	-	alr1531	-	transposase
1527	 39.83	0	1793647..1793877	+	76	17229024	-	asr1532	-	hypothetical protein
1528	 44.10	0	1794445..1795689	+	414	17229025	rca	alr1533	-	ribulose 1,5-bisphosphate carboxylase/oxygenase activase
1529	 34.48	-1	1796090..1796524	+	144	17229026	-	alr1534	-	hypothetical protein
1530	 38.06	0	1796600..1797319	+	239	17229027	-	alr1535	-	hypothetical protein
1531	 41.60	0	1797811..1798536	+	241	17229028	-	alr1536	-	hypothetical protein
1532	 43.69	0	1798659..1799855	+	398	17229029	-	alr1537	-	hypothetical protein
1533	 38.89	0	1799944..1800861	+	305	17229030	-	alr1538	-	hypothetical protein
1534	 44.02	0	1800903..1801370	+	155	17229031	-	alr1539	-	hypothetical protein
1535	 48.06	+1	1801473..1801859	+	128	17229032	-	alr1540	-	hypothetical protein
1536	 41.40	0	1802087..1802842	-	251	17229033	-	all1541	-	peroxiredoxin 2 family protein/glutaredoxin
1537	 43.28	0	1803037..1803408	-	123	17229034	-	all1542	-	hypothetical protein
1538	 42.86	0	1803558..1804439	+	293	17229035	truB	alr1543	-	tRNA pseudouridine synthase B
1539	 46.34	+1	1804613..1804981	+	122	17229036	-	alr1544	-	hypothetical protein
1540	 41.67	0	1805104..1805487	+	127	17229037	-	alr1545	-	steroid delta-5-3-ketosteroid isomerase
1541	 43.66	0	1806230..1806742	+	170	17229038	-	alr1546	-	hypothetical protein
1542	 44.74	0	1806822..1807496	-	224	17229039	-	all1547	-	ATP-binding protein of ABC transporter
1543	 44.30	0	1807817..1808755	+	312	17229040	-	alr1548	-	hypothetical protein
1544	 44.55	0	1808845..1811100	-	751	17229041	-	all1549	-	(p)ppGpp 3-pyrophosphohydrolase
1545	 40.83	0	1811387..1811746	+	119	17229042	-	alr1550	-	hypothetical protein
1546	 37.58	-1	1811833..1813647	+	604	17229043	-	alr1551	-	two-component sensor histidine kinase
1547	 46.46	+1	1813806..1815458	+	550	17229044	-	alr1552	-	ATP-binding protein of ABC transporter
1548	 42.35	0	1815973..1817292	-	439	17229045	-	all1553	-	NADH dehydrogenase
1549	 43.02	0	1817520..1819346	+	608	17229046	-	alr1554	-	ABC transporter ATP-binding protein
1550	 39.04	0	1820360..1821235	+	291	17229047	-	alr1555	-	hypothetical protein
1551	 44.50	0	1821309..1822427	+	372	17229048	-	alr1556	-	permease protein of ABC transporter
1552	 44.02	0	1822504..1823364	-	286	17229049	-	all1557	-	hypothetical protein
1553	 40.58	0	1823804..1824010	+	68	17229050	-	asr1558	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.