IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
84	 44.05	0	88561..89073	-	170	17227581	-	all0085	-	hypothetical protein
85	 44.40	0	89188..90009	-	273	17227582	mreC	all0086	-	rod shape-determining protein
86	 46.74	+1	90105..91148	-	347	17227583	mreB	all0087	-	rod shape-determining protein
87	 42.22	0	91483..91842	+	119	17227584	-	alr0088	-	single-strand DNA-binding protein
88	 46.55	+1	91903..92568	-	221	17227585	-	all0089	-	hypothetical protein
89	 41.52	0	92574..92744	-	56	17227586	-	asl0090	-	hypothetical protein
90	 46.09	0	93059..94516	+	485	17227587	-	alr0091	-	Na+/H+-exchanging protein
91	 46.66	+1	95168..97051	+	627	17227588	-	alr0092	-	N-acetylmuramoyl-L-alanine amidase
92	 45.22	0	97350..99233	+	627	17227589	-	alr0093	-	N-acetylmuramoyl-L-alanine amidase
93	 46.30	+1	99384..100262	+	292	17227590	-	alr0094	-	glutamate racemase
94	 34.76	-1	100490..100699	-	69	17227591	-	asl0095	-	hypothetical protein
95	 44.86	0	101711..102682	+	323	17227592	sds	alr0096	-	solanesyl diphosphate synthase
96	 43.59	0	102778..102933	-	51	17227593	-	asl0097	-	hypothetical protein
97	 40.61	0	103430..103594	+	54	17227594	-	asr0098	-	hypothetical protein
98	 43.43	0	103683..104663	+	326	17227595	-	alr0099	-	hypothetical protein
99	 42.37	0	104656..104832	+	58	17227596	-	asr0100	-	hypothetical protein
100	 42.99	0	104851..105627	+	258	17227597	-	alr0101	-	hypothetical protein
101	 38.99	0	105748..105906	+	52	17227598	-	asr0102	-	hypothetical protein
102	 42.65	0	105949..108288	+	779	17227599	-	alr0103	-	hypothetical protein
103	 35.29	-1	108324..108476	+	50	17227600	-	asr0104	-	hypothetical protein
104	 42.32	0	108919..109185	+	88	17227601	-	asr0105	-	hypothetical protein
105	 44.67	0	109372..109971	+	199	17227602	gmk	alr0106	-	guanylate kinase
106	 46.44	+1	110201..110719	-	172	17227603	psaL	all0107	-	photosystem I reaction center protein subunit XI
107	 42.00	0	110990..111139	-	49	17227604	psaJ	asl0108	-	photosystem I reaction center subunit IX
108	 46.06	0	111177..111671	-	164	17227605	psaF	all0109	-	photosystem I subunit III precursor
109	 48.90	+1	111955..112995	+	346	17227606	-	alr0110	-	O-sialoglycoprotein endopeptidase
110	 43.50	0	113061..113975	-	304	17227607	-	all0111	-	esterase
111	 43.06	0	114126..114845	-	239	17227608	-	all0112	-	hypothetical protein
112	 43.12	0	115235..115786	+	183	17227609	-	alr0113	-	hypothetical protein
113	 42.55	0	116589..117413	+	274	17227610	-	alr0114	-	hypothetical protein
114	 47.32	+1	117428..118342	+	304	17227611	hemK	alr0115	-	protoporphyrinogen oxidase
115	 46.15	+1	118415..118999	+	194	17227612	-	alr0116	-	hypothetical protein
116	 41.61	0	119269..120186	+	305	17227613	-	alr0117	-	two-component sensor histidine kinase
117	 43.95	0	120149..120619	-	156	17227614	-	all0118	-	hypothetical protein
118	 43.72	0	120725..121138	-	137	17227615	-	all0119	-	hypothetical protein
119	 42.54	0	121177..122154	-	325	17227616	secF	all0120	-	preprotein translocase subunit SecF
120	 44.28	0	122151..123575	-	474	17227617	secD	all0121	-	preprotein translocase subunit SecD
121	 43.70	0	123742..124725	-	327	17227618	-	all0122	-	pyruvate dehydrogenase E1 beta subunit
122	 39.71	0	124838..125464	-	208	17227619	-	all0123	-	hypothetical protein
123	 43.33	0	125676..129035	+	1119	17227620	-	alr0124	-	leucine-rich repeat-containing protein
124	 48.11	+1	129040..129330	-	96	17227621	-	asl0125	-	transcriptional regulator
125	 44.84	0	129590..130606	-	338	17227622	cysA	all0126	-	ATP-binding protein of sulfate ABC transporter
126	 43.66	0	130711..131223	-	170	17227623	-	all0127	-	hypothetical protein
127	 45.05	0	131490..132710	+	406	17227624	chlP	alr0128	-	geranylgeranyl hydrogenase
128	 48.52	+1	133034..133777	-	247	17227625	rpaA	all0129	-	two-component response regulator
129	 42.56	0	133934..134995	+	353	17227626	-	alr0130	-	hypothetical protein
130	 42.51	0	135284..135904	-	206	17227627	-	all0131	-	hypothetical protein
131	 45.69	0	136623..137957	+	444	17227628	-	alr0132	-	hypothetical protein
132	 40.31	0	138036..138623	-	195	17227629	-	all0133	-	hypothetical protein
133	 37.46	-1	138690..139271	-	193	17227630	-	all0134	-	hypothetical protein
134	 40.14	0	139352..140086	-	244	17227631	-	all0135	-	hypothetical protein
135	 44.86	0	140188..141219	-	343	17227632	rps1	all0136	-	30S ribosomal protein S1
136	 41.67	0	141546..141653	-	35	17227633	psbT	asl0137	-	photosystem II reaction center protein T
137	 49.80	+1	141751..143280	-	509	17227634	psbB	all0138	-	photosystem II CP47 protein
138	 41.98	0	143704..144027	-	107	17227635	-	all0139	-	hypothetical protein
139	 41.77	0	144629..146287	+	552	17227636	-	alr0140	-	periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
140	 43.08	0	146423..147448	+	341	17227637	-	alr0141	-	permease protein of oligopeptide ABC transporter
141	 44.99	0	147532..148440	+	302	17227638	-	alr0142	-	ribonuclease H
142	 46.48	+1	148503..149681	-	392	17227639	-	all0143	-	hypothetical protein
143	 44.26	0	149871..150776	-	301	17227640	-	all0144	-	hypothetical protein
144	 40.00	0	151210..151659	+	149	17227641	-	alr0145	-	hypothetical protein
145	 49.10	+1	151736..152014	-	92	17227642	rpmA	asl0146	-	50S ribosomal protein L27
146	 45.29	0	152042..152434	-	130	17227643	rplU	all0147	-	50S ribosomal protein L21
147	 37.40	-1	152869..153114	+	81	17227644	-	asr0148	-	hypothetical protein
148	 34.11	-1	153111..153497	+	128	17227645	-	alr0149	-	hypothetical protein
149	 37.01	-1	153551..154639	+	362	17227646	-	alr0150	-	hypothetical protein
150	 42.76	0	154744..155040	-	98	17227647	-	asl0151	-	hypothetical protein
151	 48.62	+1	155135..156259	-	374	17227648	chlI	all0152	-	protoporphyrin IX magnesium chelatase chain
152	 41.08	0	156575..158188	+	537	17227649	-	alr0153	-	penicillin-binding protein
153	 43.83	0	158589..159779	-	396	17227650	ftsW	all0154	-	cell division protein
154	 43.22	0	159979..160524	-	181	17227651	-	all0155	-	hypothetical protein
155	 42.72	0	161060..161581	-	173	17227652	-	all0156	-	hypothetical protein
156	 34.23	-1	161681..162349	-	222	17227653	-	all0157	-	hypothetical protein
157	 31.94	-2	162352..163140	-	262	17227654	-	all0158	-	hypothetical protein
158	 37.27	-1	163382..164575	+	397	17227655	-	alr0159	-	hypothetical protein
159	 45.11	0	164558..165712	-	384	17227656	-	all0160	-	hypothetical protein
160	 38.10	0	165871..166206	-	111	17227657	petJ	all0161	-	cytochrome c6
161	 39.33	0	166535..167335	+	266	17227658	-	alr0162	-	hypothetical protein
162	 40.11	0	167600..167776	-	58	17227659	-	asl0163	-	hypothetical protein
163	 41.06	0	167936..168349	-	137	17227660	-	all0164	-	hypothetical protein
164	 47.32	+1	168634..171099	+	821	17227661	-	alr0165	-	hypothetical protein
165	 44.69	0	171094..172581	-	495	17227662	-	all0166	-	alpha,alpha-trehalase
166	 41.68	0	172658..175426	-	922	17227663	-	all0167	-	maltooligosyltrehalose synthase
167	 42.94	0	175504..177366	-	620	17227664	-	all0168	-	alpha-amylase
168	 42.09	0	177701..179629	+	642	17227665	-	alr0169	-	cyclomaltodextrin glucanotransferase
169	 45.63	0	180025..181122	-	365	17227666	-	all0170	-	glycolate oxidase
170	 34.96	-1	181350..181595	-	81	17227667	-	asl0171	-	hypothetical protein
171	 37.75	-1	181582..181989	-	135	17227668	-	all0172	-	hypothetical protein
172	 44.75	0	182241..183116	-	291	17227669	-	all0173	-	hypothetical protein
173	 48.21	+1	183300..184643	-	447	17227670	-	all0174	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
174	 46.72	+1	185196..186017	+	273	17227671	-	alr0175	-	rRNA methylase
175	 40.53	0	186051..186314	-	87	17227672	-	asl0176	-	hypothetical protein
176	 46.47	+1	186584..188296	-	570	17227673	-	all0177	-	flavoprotein
177	 45.52	0	188577..190316	-	579	17227674	-	all0178	-	flavoprotein
178	 44.72	0	190785..191030	+	81	17227675	-	asr0179	-	hypothetical protein
179	 43.81	0	191109..191891	+	260	17227676	-	alr0180	-	ATP-binding protein of ABC transporter
180	 42.63	0	191965..193395	+	476	17227677	-	alr0181	-	hypothetical protein
181	 40.60	0	193375..195522	-	715	17227678	-	all0182	-	two-component hybrid sensor and regulator
182	 52.73	+2	195669..195833	+	54	17227679	-	asr0183	-	hypothetical protein
183	 43.38	0	196342..197625	-	427	17227680	-	all0184	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.