IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1204	 42.52	0	1421668..1422222	+	184	17228701	-	alr1206	-	hypothetical protein
1205	 48.56	+1	1422293..1423021	+	242	17228702	pyrH	alr1207	-	uridylate kinase
1206	 42.99	0	1423008..1423556	+	182	17228703	frr	alr1208	-	ribosome recycling factor
1207	 44.65	0	1423662..1424783	+	373	17228704	-	alr1209	-	hypothetical protein
1208	 43.59	0	1424978..1427698	-	906	17228705	-	all1210	-	hypothetical protein
1209	 41.09	0	1427790..1429130	-	446	17228706	-	all1211	-	hypothetical protein
1210	 40.08	0	1429475..1430437	+	320	17228707	-	alr1212	-	transposase
1211	 48.72	+1	1430579..1430812	+	77	17228708	-	asr1213	-	hypothetical protein
1212	 44.96	0	1430869..1431831	-	320	17228709	uppP	all1214	-	undecaprenyl pyrophosphate phosphatase
1213	 43.51	0	1432343..1432981	+	212	17228710	-	alr1215	-	hypothetical protein
1214	 39.78	0	1433292..1433741	+	149	17228711	psbU	alr1216	-	photosystem II complex extrinsic protein precursor U
1215	 46.57	+1	1433852..1435588	+	578	17228712	-	alr1217	-	L-aspartate oxidase
1216	 44.73	0	1435951..1436187	-	78	17228713	-	asl1218	-	hypothetical protein
1217	 39.39	0	1436855..1439068	-	737	17228714	-	all1219	-	hypothetical protein
1218	 43.80	0	1439626..1440609	-	327	17228715	-	all1220	-	hypothetical protein
1219	 47.94	+1	1440687..1441535	-	282	17228716	btpA	all1221	-	biogenesis of thylakoid protein A
1220	 45.88	0	1442268..1443590	+	440	17228717	-	alr1222	-	hypothetical protein
1221	 47.80	+1	1443660..1445201	+	513	17228718	-	alr1223	-	ATP-dependent RNA helicase
1222	 40.93	0	1445295..1445873	+	192	17228719	-	alr1224	-	hypothetical protein
1223	 43.78	0	1445996..1446943	-	315	17228720	-	all1225	-	hypothetical protein
1224	 48.58	+1	1447015..1448109	-	364	17228721	-	all1226	-	hypothetical protein
1225	 46.44	+1	1448230..1449282	-	350	17228722	-	all1227	-	hypothetical protein
1226	 39.91	0	1449318..1450214	-	298	17228723	-	all1228	-	hypothetical protein
1227	 40.78	0	1450962..1456211	+	1749	17228724	-	alr1229	-	two-component sensor histidine kinase
1228	 34.65	-1	1456204..1457415	+	403	17228725	-	alr1230	-	two-component response regulator
1229	 35.82	-1	1457572..1458735	+	387	17228726	-	alr1231	-	two-component hybrid sensor and regulator
1230	 33.67	-2	1459523..1461928	+	801	17228727	-	alr1232	-	hypothetical protein
1231	 41.88	0	1462095..1462925	+	276	17228728	-	alr1233	-	hypothetical protein
1232	 38.05	0	1463564..1463860	+	98	17228729	-	asr1234	-	hypothetical protein
1233	 47.08	+1	1464014..1465417	-	467	17228730	-	all1235	-	hypothetical protein
1234	 34.72	-1	1465738..1467252	+	504	17228731	-	alr1236	-	hypothetical protein
1235	 44.66	0	1467391..1469448	-	685	17228732	-	all1237	-	hypothetical protein
1236	 45.85	0	1470240..1470854	+	204	17228733	clpP	alr1238	-	ATP-dependent Clp protease proteolytic subunit
1237	 43.29	0	1471215..1472048	-	277	17228734	-	all1239	-	hypothetical protein
1238	 44.81	0	1473004..1475355	+	783	17228735	zam	alr1240	-	Zam protein
1239	 46.83	+1	1475373..1476002	+	209	17228736	-	alr1241	-	aromatic acid decarboxylase
1240	 42.04	0	1476319..1476984	+	221	17228737	-	alr1242	-	hypothetical protein
1241	 40.18	0	1477101..1477319	-	72	17228738	-	asl1243	-	hypothetical protein
1242	 43.59	0	1478704..1479249	+	181	17228739	aroK	alr1244	-	shikimate kinase
1243	 44.97	0	1479485..1480378	+	297	17228740	argB	alr1245	-	acetylglutamate kinase
1244	 43.87	0	1480481..1481002	+	173	17228741	-	alr1246	-	hypothetical protein
1245	 37.75	-1	1481103..1481963	+	286	17228742	-	alr1247	-	hypothetical protein
1246	 43.88	0	1482030..1482674	-	214	17228743	-	all1248	-	pyridoxamine 5-phosphate oxidase
1247	 35.19	-1	1482966..1483127	-	53	17228744	-	asl1249	-	hypothetical protein
1248	 40.31	0	1483130..1484218	+	362	17228745	-	alr1250	-	hypothetical protein
1249	 36.43	-1	1484232..1484876	-	214	17228746	-	all1251	-	hypothetical protein
1250	 37.98	0	1485295..1485810	-	171	17228747	-	all1252	-	hypothetical protein
1251	 41.42	0	1485930..1486646	-	238	17228748	-	all1253	-	hypothetical protein
1252	 39.98	0	1487122..1490055	+	977	17228749	-	alr1254	-	DNA polymerase I
1253	 43.52	0	1490270..1491241	+	323	17228750	-	alr1255	-	hypothetical protein
1254	 44.71	0	1491370..1492872	-	500	17228751	-	all1256	-	hypothetical protein
1255	 32.18	-2	1492992..1493165	+	57	17228752	-	asr1257	-	hypothetical protein
1256	 43.53	0	1493178..1493579	-	133	17228753	psbZ	all1258	-	photosystem II 11 kD protein
1257	 36.39	-1	1493867..1494652	+	261	17228754	-	alr1259	-	hypothetical protein
1258	 43.31	0	1494747..1495538	+	263	17228755	-	alr1260	-	hypothetical protein
1259	 47.34	+1	1495626..1497467	+	613	17228756	ftsH	alr1261	-	cell division protein
1260	 41.10	0	1497578..1497796	-	72	17228757	-	asl1262	-	hypothetical protein
1261	 44.27	0	1498346..1499314	+	322	17228758	uvsE	alr1263	-	putative UV damage endonuclease
1262	 43.28	0	1499374..1500972	+	532	17228759	dnaK	alr1264	-	DnaK-type molecular chaperone
1263	 38.06	0	1501101..1501502	-	133	17228760	-	all1265	-	hypothetical protein
1264	 33.06	-2	1501754..1503553	+	599	17228761	-	alr1266	-	hypothetical protein
1265	 48.19	+1	1503599..1506229	-	876	17228762	-	all1267	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1266	 35.35	-1	1506485..1506880	-	131	17228763	-	all1268	-	hypothetical protein
1267	 43.85	0	1507526..1508533	-	335	17228764	trpS	all1269	-	tryptophanyl-tRNA synthetase
1268	 41.43	0	1508709..1509659	+	316	17228765	-	alr1270	-	proline iminopeptidase
1269	 40.76	0	1509754..1510494	+	246	17228766	-	alr1271	-	hypothetical protein
1270	 46.20	+1	1510514..1513078	-	854	17228767	-	all1272	-	hypothetical protein
1271	 41.98	0	1513354..1513677	-	107	17228768	-	all1273	-	hypothetical protein
1272	 40.56	0	1513668..1513847	-	59	17228769	-	asl1274	-	hypothetical protein
1273	 33.33	-2	1515178..1515342	+	54	17228770	-	asr1275	-	hypothetical protein
1274	 40.46	0	1515314..1516141	+	275	17228771	-	alr1276	-	hypothetical protein
1275	 40.17	0	1516479..1516595	+	38	17228772	psbI	asr1277	-	photosystem II reaction center I protein I
1276	 45.07	0	1516774..1519371	+	865	17228773	-	alr1278	-	hypothetical protein
1277	 37.21	-1	1519410..1520906	-	498	17228774	-	all1279	-	two-component hybrid sensor and regulator
1278	 37.05	-1	1520928..1523753	-	941	17228775	-	all1280	-	two-component sensor histidine kinase
1279	 42.37	0	1524410..1525051	-	213	17228776	-	all1281	-	two-component response regulator
1280	 48.50	+1	1525389..1526291	+	300	17228777	-	alr1282	-	lipoyl synthase
1281	 43.70	0	1526610..1526744	+	44	17228778	psaX	asr1283	-	photosystem I protein
1282	 41.87	0	1526847..1527713	-	288	17228779	-	all1284	-	permease protein of ABC transporter
1283	 41.11	0	1527904..1529715	+	603	17228780	-	alr1285	-	two-component hybrid sensor and regulator
1284	 43.48	0	1529883..1530710	+	275	17228781	-	alr1286	-	hypothetical protein
1285	 42.15	0	1530721..1531083	-	120	17228782	-	all1287	-	hypothetical protein
1286	 40.36	0	1531124..1532275	-	383	17228783	-	all1288	-	hypothetical protein
1287	 38.97	0	1532669..1532881	+	70	17228784	-	asr1289	-	hypothetical protein
1288	 39.47	0	1533026..1533628	-	200	17228785	-	all1290	-	PvuII DNA methyltransferase
1289	 42.40	0	1533964..1534404	-	146	17228786	cynS	all1291	-	cyanate hydratase
1290	 38.93	0	1534576..1535004	-	142	17228787	-	all1292	-	hypothetical protein
1291	 42.00	0	1535015..1535164	-	49	17228788	-	asl1293	-	hypothetical protein
1292	 42.04	0	1535302..1535634	-	110	17228789	-	all1294	-	hypothetical protein
1293	 41.21	0	1535955..1536767	+	270	17228790	-	alr1295	-	hypothetical protein
1294	 40.77	0	1536816..1537232	+	138	17228791	-	alr1296	-	hypothetical protein
1295	 41.94	0	1537345..1539285	+	646	17228792	-	alr1297	-	ABC transporter ATP binding protein
1296	 36.51	-1	1539534..1540037	+	167	17228793	-	alr1298	-	hypothetical protein
1297	 42.69	0	1540090..1541265	+	391	17228794	purT	alr1299	-	phosphoribosylglycinamide formyltransferase 2
1298	 34.88	-1	1541400..1541852	+	150	17228795	-	alr1300	-	hypothetical protein
1299	 33.64	-2	1541868..1542527	+	219	17228796	-	alr1301	-	hypothetical protein
1300	 36.27	-1	1542715..1543293	+	192	17228797	-	alr1302	-	ribosomal-protein-alanine acetyltransferase
1301	 40.34	0	1543341..1544753	-	470	17228798	-	all1303	-	Na+/H+ antiporter
1302	 44.48	0	1544865..1546586	-	573	17228799	-	all1304	-	sulfate permease family protein
1303	 38.10	0	1547441..1547713	-	90	17228800	-	asl1305	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.