IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1033	 41.72	0	1205856..1206296	-	146	17228530	-	all1035	-	transcriptional regulator
1034	 42.90	0	1206496..1207446	+	316	17228531	-	alr1036	-	hypothetical protein
1035	 43.42	0	1207483..1209504	+	673	17228532	-	alr1037	-	hypothetical protein
1036	 42.80	0	1209658..1209900	+	80	17228533	-	asr1038	-	hypothetical protein
1037	 41.19	0	1209924..1211120	+	398	17228534	-	alr1039	-	aspartate aminotransferase
1038	 36.07	-1	1211302..1211739	+	145	17228535	-	alr1040	-	hypothetical protein
1039	 47.59	+1	1211965..1213002	+	345	17228536	glpX	alr1041	-	fructose 1,6-bisphosphatase II
1040	 44.29	0	1213221..1214507	+	428	17228537	hemA	alr1042	-	glutamyl-tRNA reductase
1041	 38.26	0	1214613..1215323	-	236	17228538	-	all1043	-	hypothetical protein
1042	 40.10	0	1215867..1216457	+	196	17228539	-	alr1044	-	transcriptional regulator
1043	 38.49	0	1216551..1217462	+	303	17228540	-	alr1045	-	hypothetical protein
1044	 45.72	0	1217552..1218334	-	260	17228541	natA	all1046	-	ATP-binding protein of ABC transporter
1045	 42.77	0	1218324..1219457	-	377	17228542	natC	all1047	-	permease protein of ABC transporter
1046	 38.89	0	1219657..1219854	+	65	17228543	-	asr1048	-	hypothetical protein
1047	 38.95	0	1219975..1220241	+	88	17228544	-	asr1049	-	hypothetical protein
1048	 45.94	0	1220346..1221932	+	528	17228545	pgi	alr1050	-	glucose-6-phosphate isomerase
1049	 41.20	0	1222204..1223373	-	389	17228546	-	all1051	-	glycerophosphoryl diester phosphodiesterase
1050	 41.52	0	1223855..1224733	+	292	17228547	-	alr1052	-	hypothetical protein
1051	 44.97	0	1224827..1226287	-	486	17228548	gatA	all1053	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1052	 38.06	0	1226739..1228091	+	450	17228549	-	alr1054	-	DNA polymerase III subunit alpha
1053	 32.97	-2	1228376..1228921	+	181	17228550	-	alr1055	-	hypothetical protein
1054	 40.57	0	1229286..1229741	+	151	17228551	-	alr1056	-	hypothetical protein
1055	 44.44	0	1230130..1230471	+	113	17228552	-	alr1057	-	hypothetical protein
1056	 47.39	+1	1230574..1233639	-	1021	17228553	-	all1058	-	hypothetical protein
1057	 42.51	0	1233670..1236087	-	805	17228554	-	all1059	-	sucrose synthase
1058	 44.37	0	1236802..1237254	+	150	17228555	-	alr1060	-	hypothetical protein
1059	 38.54	0	1237674..1239920	-	748	17228556	-	all1061	-	hypothetical protein
1060	 44.72	0	1240251..1240742	-	163	17228557	-	all1062	-	methionine sulfoxide reductase A
1061	 44.87	0	1240822..1241757	+	311	17228558	-	alr1063	-	hypothetical protein
1062	 39.80	0	1242298..1242498	+	66	17228559	-	asr1064	-	hypothetical protein
1063	 42.24	0	1242516..1243301	-	261	17228560	-	all1065	-	hypothetical protein
1064	 44.44	0	1243551..1243766	-	71	17228561	-	asl1066	-	hypothetical protein
1065	 43.84	0	1243775..1244212	+	145	17228562	-	alr1067	-	hypothetical protein
1066	 36.27	-1	1244251..1247793	-	1180	17228563	-	all1068	-	two-component hybrid sensor and regulator
1067	 41.40	0	1247986..1251294	-	1102	17228564	-	all1069	-	methyl-accepting chemotaxis protein
1068	 36.13	-1	1251441..1251941	-	166	17228565	-	all1070	-	purine-binding chemotaxis protein
1069	 36.64	-1	1251962..1252324	-	120	17228566	-	all1071	-	two-component response regulator
1070	 39.92	0	1252601..1253785	-	394	17228567	-	all1072	-	two-component response regulator
1071	 46.55	+1	1254612..1257494	+	960	17228568	ileS	alr1073	-	isoleucyl-tRNA synthetase
1072	 37.42	-1	1257507..1258166	+	219	17228569	-	alr1074	-	hypothetical protein
1073	 39.21	0	1258347..1259231	-	294	17228570	-	all1075	-	parA family protein
1074	 45.80	0	1259588..1260574	-	328	17228571	-	all1076	-	hypothetical protein
1075	 46.18	+1	1260773..1261519	+	248	17228572	-	alr1077	-	hypothetical protein
1076	 42.81	0	1261663..1262580	+	305	17228573	rps1	alr1078	-	30S ribosomal protein S1
1077	 47.30	+1	1262650..1263666	-	338	17228574	-	all1079	-	hypothetical protein
1078	 47.74	+1	1263865..1265148	+	427	17228575	argD	alr1080	-	acetylornithine aminotransferase
1079	 41.06	0	1265503..1266525	+	340	17228576	-	alr1081	-	hypothetical protein
1080	 39.57	0	1266651..1267019	-	122	17228577	-	all1082	-	hypothetical protein
1081	 30.17	-2	1267563..1268288	+	241	17228578	-	alr1083	-	hypothetical protein
1082	 36.33	-1	1268305..1270140	-	611	17228579	-	all1084	-	hypothetical protein
1083	 43.75	0	1270718..1271485	+	255	17228580	-	alr1085	-	hypothetical protein
1084	 39.58	0	1271561..1272697	+	378	17228581	-	alr1086	-	two-component response regulator
1085	 32.82	-2	1272694..1273083	-	129	17228582	-	all1087	-	anti-sigma factor antagonist
1086	 37.46	-1	1273903..1275309	-	468	17228583	-	all1088	-	two-component sensor histidine kinase
1087	 38.75	0	1275569..1276915	-	448	17228584	-	all1089	-	hypothetical protein
1088	 44.82	0	1277055..1278491	-	478	17228585	-	all1090	-	hypothetical protein
1089	 37.98	0	1278528..1278893	-	121	17228586	-	all1091	-	hypothetical protein
1090	 45.31	0	1278925..1280385	-	486	17228587	cysS	all1092	-	cysteinyl-tRNA synthetase
1091	 41.07	0	1280559..1281683	+	374	17228588	-	alr1093	-	hypothetical protein
1092	 41.17	0	1282080..1283138	+	352	17228589	-	alr1094	-	periplasmic phosphate-binding protein of ABC transporter
1093	 47.24	+1	1283199..1284212	+	337	17228590	gap3	alr1095	-	glyceraldehyde-3-phosphate dehydrogenase
1094	 44.26	0	1284315..1285577	+	420	17228591	-	alr1096	-	multidrug-efflux transporter
1095	 39.79	0	1285583..1286713	+	376	17228592	-	alr1097	-	multidrug-efflux transporter
1096	 49.12	+1	1286771..1286941	-	56	17228593	-	asl1098	-	hypothetical protein
1097	 40.08	0	1287083..1288045	-	320	17228594	-	all1099	-	transposase
1098	 36.24	-1	1288408..1289403	-	331	17228595	-	all1100	-	iron(III) dicitrate-binding periplasmic protein
1099	 42.48	0	1289637..1292294	-	885	17228596	-	all1101	-	ferrichrome iron receptor
1100	 50.26	+2	1292748..1292942	+	64	17228597	-	asr1102	-	hypothetical protein
1101	 44.84	0	1292936..1293274	-	112	17228598	-	all1103	-	transcriptional regulator
1102	 38.41	0	1293372..1293824	+	150	17228599	-	alr1104	-	hypothetical protein
1103	 36.62	-1	1293889..1294284	+	131	17228600	-	alr1105	-	arsenate reductase
1104	 44.96	0	1294384..1295811	-	475	17228601	-	all1106	-	hypothetical protein
1105	 42.41	0	1295920..1296558	+	212	17228602	-	alr1107	-	phosphoglycerate mutase
1106	 44.07	0	1296652..1298160	+	502	17228603	-	alr1108	-	hypothetical protein
1107	 32.32	-2	1298903..1299295	+	130	17228604	-	alr1109	-	hypothetical protein
1108	 47.56	+1	1299482..1300690	-	402	17228605	-	all1110	-	chromate transport protein
1109	 39.74	0	1301070..1301303	-	77	17228606	-	asl1111	-	hypothetical protein
1110	 45.49	0	1301997..1304192	+	731	17228607	-	alr1112	-	hypothetical protein
1111	 33.62	-2	1304511..1305893	+	460	17228608	-	alr1113	-	ParA family protein
1112	 30.17	-2	1305896..1306654	+	252	17228609	-	alr1114	-	hypothetical protein
1113	 36.71	-1	1306700..1306906	+	68	17228610	-	asr1115	-	hypothetical protein
1114	 33.86	-1	1306903..1307859	-	318	17228611	-	all1116	-	hypothetical protein
1115	 42.52	0	1308038..1309267	+	409	17228612	-	alr1117	-	hypothetical protein
1116	 44.29	0	1309271..1311478	-	735	17228613	cyaA	all1118	-	adenylate cyclase
1117	 44.01	0	1311475..1312242	-	255	17228614	-	all1119	-	hypothetical protein
1118	 31.69	-2	1312618..1312860	-	80	17228615	-	asl1120	-	hypothetical protein
1119	 47.20	+1	1313084..1318882	+	1932	17228616	-	alr1121	-	two-component hybrid sensor and regulator
1120	 41.13	0	1318856..1319368	-	170	17228617	-	all1122	-	hypothetical protein
1121	 41.26	0	1319528..1320019	-	163	17228618	-	all1123	-	hypothetical protein
1122	 44.06	0	1320298..1320996	-	232	17228619	-	all1124	-	hypothetical protein
1123	 39.63	0	1321117..1321497	+	126	17228620	-	alr1125	-	hypothetical protein
1124	 43.18	0	1321644..1323014	-	456	17228621	-	all1126	-	NADH dehydrogenase
1125	 43.98	0	1323383..1324744	-	453	17228622	-	all1127	-	NADH dehydrogenase
1126	 46.51	+1	1325217..1328843	+	1208	17228623	-	alr1128	-	chromosome segregation protein
1127	 47.14	+1	1328902..1329879	+	325	17228624	-	alr1129	-	hypothetical protein
1128	 42.63	0	1329942..1330511	-	189	17228625	-	all1130	-	hypothetical protein
1129	 38.46	0	1330697..1330930	+	77	17228626	-	asr1131	-	hypothetical protein
1130	 42.84	0	1331525..1333522	-	665	17228627	uvrB	all1132	-	excinuclease ABC subunit B
1131	 43.89	0	1333867..1334349	+	160	17228628	-	alr1133	-	hypothetical protein
1132	 39.34	0	1334633..1334815	+	60	17228629	-	asr1134	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.