IslandPathversion 1.0

IslandPath Analysis: Nostoc sp. PCC 7120



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.00 STD DEV: 4.11
Nostoc sp. PCC 7120, complete genome - 1..6413771
5366 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
990	 48.34	+1	1160381..1161793	+	470	17228487	-	alr0992	-	ammonium transporter
991	 47.23	+1	1162000..1165209	-	1069	17228488	-	all0993	-	hypothetical protein
992	 45.08	0	1165509..1165772	-	87	17228489	-	asl0994	-	hypothetical protein
993	 45.70	0	1165953..1166429	-	158	17228490	-	all0995	-	hypothetical protein
994	 41.92	0	1166972..1168438	+	488	17228491	-	alr0996	-	protease
995	 34.79	-1	1168549..1168959	-	136	17228492	-	all0997	-	hypothetical protein
996	 45.03	0	1169392..1170306	+	304	17228493	-	alr0998	-	hypothetical protein
997	 40.38	0	1170482..1171375	+	297	17228494	-	alr0999	-	transposase
998	 41.74	0	1171949..1173031	+	360	17228495	-	alr1000	-	hypothetical protein
999	 42.31	0	1173376..1173921	+	181	17228496	-	alr1001	-	hypothetical protein
1000	 42.32	0	1174084..1174584	+	166	17228497	-	alr1002	-	hypothetical protein
1001	 40.60	0	1174706..1175104	-	132	17228498	-	all1003	-	hypothetical protein
1002	 46.77	+1	1175265..1176410	+	381	17228499	-	alr1004	-	alanine--glyoxylate aminotransferase
1003	 48.15	+1	1176606..1176848	+	80	17228500	-	asr1005	-	hypothetical protein
1004	 43.75	0	1176845..1177564	-	239	17228501	-	all1006	-	hypothetical protein
1005	 44.63	0	1177717..1179159	-	480	17228502	-	all1007	-	hypothetical protein
1006	 36.69	-1	1179311..1180264	+	317	17228503	-	alr1008	-	hypothetical protein
1007	 40.74	0	1180363..1180740	-	125	17228504	-	all1009	-	hypothetical protein
1008	 42.78	0	1181159..1181539	+	126	17228505	-	alr1010	-	hypothetical protein
1009	 41.97	0	1181536..1182114	-	192	17228506	-	all1011	-	maltose transacetylase
1010	 37.64	-1	1182300..1183598	-	432	17228507	-	all1012	-	two-component response regulator
1011	 41.27	0	1184093..1185604	+	503	17228508	-	alr1013	-	hypothetical protein
1012	 28.95	-2	1185933..1186274	+	113	17228509	-	alr1014	-	hypothetical protein
1013	 34.55	-1	1186435..1187010	+	191	17228510	-	alr1015	-	hypothetical protein
1014	 38.72	0	1187046..1187435	+	129	17228511	-	alr1016	-	hypothetical protein
1015	 44.44	0	1187442..1187630	+	62	17228512	-	asr1017	-	hypothetical protein
1016	 47.81	+1	1187627..1189021	+	464	17228513	-	alr1018	-	amidase
1017	 41.91	0	1189169..1189996	-	275	17228514	-	all1019	-	methionine aminopeptidase
1018	 40.00	0	1190138..1190707	-	189	17228515	-	all1020	-	hypothetical protein
1019	 42.18	0	1190743..1193580	-	945	17228516	-	all1021	-	hypothetical protein
1020	 42.42	0	1193694..1194122	-	142	17228517	-	all1022	-	hypothetical protein
1021	 46.00	0	1194350..1194862	-	170	17228518	-	all1023	-	hypothetical protein
1022	 46.63	+1	1195024..1195632	+	202	17228519	-	alr1024	-	ferripyochelin binding protein
1023	 42.86	0	1195853..1195978	+	41	17228520	pbsY	asr1025	-	photosystem II protein Y
1024	 40.99	0	1196116..1197369	+	417	17228521	-	alr1026	-	folylpolyglutamate synthase
1025	 41.72	0	1197400..1198698	-	432	17228522	-	all1027	-	periplasmic sugar-binding protein of ABC transporter
1026	 42.55	0	1198932..1200038	+	368	17228523	-	alr1028	-	hypothetical protein
1027	 44.79	0	1200141..1200908	+	255	17228524	-	alr1029	-	hypothetical protein
1028	 42.91	0	1200905..1201666	+	253	17228525	-	alr1030	-	hypothetical protein
1029	 44.86	0	1201776..1204247	+	823	17228526	-	alr1031	-	general secretion pathway protein D
1030	 40.64	0	1204412..1204849	-	145	17228527	-	all1032	-	hypothetical protein
1031	 44.95	0	1205015..1205341	-	108	17228528	-	all1033	-	hypothetical protein
1032	 42.47	0	1205338..1205709	-	123	17228529	-	all1034	-	hypothetical protein
1033	 41.72	0	1205856..1206296	-	146	17228530	-	all1035	-	transcriptional regulator
1034	 42.90	0	1206496..1207446	+	316	17228531	-	alr1036	-	hypothetical protein
1035	 43.42	0	1207483..1209504	+	673	17228532	-	alr1037	-	hypothetical protein
1036	 42.80	0	1209658..1209900	+	80	17228533	-	asr1038	-	hypothetical protein
1037	 41.19	0	1209924..1211120	+	398	17228534	-	alr1039	-	aspartate aminotransferase
1038	 36.07	-1	1211302..1211739	+	145	17228535	-	alr1040	-	hypothetical protein
1039	 47.59	+1	1211965..1213002	+	345	17228536	glpX	alr1041	-	fructose 1,6-bisphosphatase II
1040	 44.29	0	1213221..1214507	+	428	17228537	hemA	alr1042	-	glutamyl-tRNA reductase
1041	 38.26	0	1214613..1215323	-	236	17228538	-	all1043	-	hypothetical protein
1042	 40.10	0	1215867..1216457	+	196	17228539	-	alr1044	-	transcriptional regulator
1043	 38.49	0	1216551..1217462	+	303	17228540	-	alr1045	-	hypothetical protein
1044	 45.72	0	1217552..1218334	-	260	17228541	natA	all1046	-	ATP-binding protein of ABC transporter
1045	 42.77	0	1218324..1219457	-	377	17228542	natC	all1047	-	permease protein of ABC transporter
1046	 38.89	0	1219657..1219854	+	65	17228543	-	asr1048	-	hypothetical protein
1047	 38.95	0	1219975..1220241	+	88	17228544	-	asr1049	-	hypothetical protein
1048	 45.94	0	1220346..1221932	+	528	17228545	pgi	alr1050	-	glucose-6-phosphate isomerase
1049	 41.20	0	1222204..1223373	-	389	17228546	-	all1051	-	glycerophosphoryl diester phosphodiesterase
1050	 41.52	0	1223855..1224733	+	292	17228547	-	alr1052	-	hypothetical protein
1051	 44.97	0	1224827..1226287	-	486	17228548	gatA	all1053	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1052	 38.06	0	1226739..1228091	+	450	17228549	-	alr1054	-	DNA polymerase III subunit alpha
1053	 32.97	-2	1228376..1228921	+	181	17228550	-	alr1055	-	hypothetical protein
1054	 40.57	0	1229286..1229741	+	151	17228551	-	alr1056	-	hypothetical protein
1055	 44.44	0	1230130..1230471	+	113	17228552	-	alr1057	-	hypothetical protein
1056	 47.39	+1	1230574..1233639	-	1021	17228553	-	all1058	-	hypothetical protein
1057	 42.51	0	1233670..1236087	-	805	17228554	-	all1059	-	sucrose synthase
1058	 44.37	0	1236802..1237254	+	150	17228555	-	alr1060	-	hypothetical protein
1059	 38.54	0	1237674..1239920	-	748	17228556	-	all1061	-	hypothetical protein
1060	 44.72	0	1240251..1240742	-	163	17228557	-	all1062	-	methionine sulfoxide reductase A
1061	 44.87	0	1240822..1241757	+	311	17228558	-	alr1063	-	hypothetical protein
1062	 39.80	0	1242298..1242498	+	66	17228559	-	asr1064	-	hypothetical protein
1063	 42.24	0	1242516..1243301	-	261	17228560	-	all1065	-	hypothetical protein
1064	 44.44	0	1243551..1243766	-	71	17228561	-	asl1066	-	hypothetical protein
1065	 43.84	0	1243775..1244212	+	145	17228562	-	alr1067	-	hypothetical protein
1066	 36.27	-1	1244251..1247793	-	1180	17228563	-	all1068	-	two-component hybrid sensor and regulator
1067	 41.40	0	1247986..1251294	-	1102	17228564	-	all1069	-	methyl-accepting chemotaxis protein
1068	 36.13	-1	1251441..1251941	-	166	17228565	-	all1070	-	purine-binding chemotaxis protein
1069	 36.64	-1	1251962..1252324	-	120	17228566	-	all1071	-	two-component response regulator
1070	 39.92	0	1252601..1253785	-	394	17228567	-	all1072	-	two-component response regulator
1071	 46.55	+1	1254612..1257494	+	960	17228568	ileS	alr1073	-	isoleucyl-tRNA synthetase
1072	 37.42	-1	1257507..1258166	+	219	17228569	-	alr1074	-	hypothetical protein
1073	 39.21	0	1258347..1259231	-	294	17228570	-	all1075	-	parA family protein
1074	 45.80	0	1259588..1260574	-	328	17228571	-	all1076	-	hypothetical protein
1075	 46.18	+1	1260773..1261519	+	248	17228572	-	alr1077	-	hypothetical protein
1076	 42.81	0	1261663..1262580	+	305	17228573	rps1	alr1078	-	30S ribosomal protein S1
1077	 47.30	+1	1262650..1263666	-	338	17228574	-	all1079	-	hypothetical protein
1078	 47.74	+1	1263865..1265148	+	427	17228575	argD	alr1080	-	acetylornithine aminotransferase
1079	 41.06	0	1265503..1266525	+	340	17228576	-	alr1081	-	hypothetical protein
1080	 39.57	0	1266651..1267019	-	122	17228577	-	all1082	-	hypothetical protein
1081	 30.17	-2	1267563..1268288	+	241	17228578	-	alr1083	-	hypothetical protein
1082	 36.33	-1	1268305..1270140	-	611	17228579	-	all1084	-	hypothetical protein
1083	 43.75	0	1270718..1271485	+	255	17228580	-	alr1085	-	hypothetical protein
1084	 39.58	0	1271561..1272697	+	378	17228581	-	alr1086	-	two-component response regulator
1085	 32.82	-2	1272694..1273083	-	129	17228582	-	all1087	-	anti-sigma factor antagonist
1086	 37.46	-1	1273903..1275309	-	468	17228583	-	all1088	-	two-component sensor histidine kinase
1087	 38.75	0	1275569..1276915	-	448	17228584	-	all1089	-	hypothetical protein
1088	 44.82	0	1277055..1278491	-	478	17228585	-	all1090	-	hypothetical protein
1089	 37.98	0	1278528..1278893	-	121	17228586	-	all1091	-	hypothetical protein
42.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.