IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
925	 63.30	0	979072..979368	+	98	87198951	rplU	Saro_0929	-	50S ribosomal protein L21
926	 65.93	0	979395..979664	+	89	87198952	rpmA	Saro_0930	-	50S ribosomal protein L27
927	 71.05	+1	979898..980467	+	189	87198953	-	Saro_0931	-	GCN5-related N-acetyltransferase
928	 64.75	0	980516..981400	-	294	87198954	-	Saro_0932	-	FF domain-containing protein
929	 66.16	0	981438..982028	+	196	87198955	-	Saro_0933	-	TetR family transcriptional regulator
930	 66.53	0	982012..982758	-	248	87198956	-	Saro_0934	-	aminomethyl transferase
931	 65.71	0	982797..983837	+	346	87198957	-	Saro_0935	-	dihydroorotase
932	 66.89	0	983841..984728	-	295	87198958	-	Saro_0936	-	rarD protein
933	 71.31	+1	984937..985431	+	164	87198959	-	Saro_0937	-	17 kDa surface antigen
934	 69.30	+1	985557..985784	+	75	87198960	-	Saro_0938	-	hypothetical protein
935	 67.51	0	985781..987196	-	471	87198961	-	Saro_0939	-	succinylglutamic semialdehyde dehydrogenase
936	 67.87	0	987315..988724	-	469	87198962	-	Saro_0940	-	hypothetical protein
937	 66.78	0	988797..989651	+	284	87198963	-	Saro_0941	-	alpha/beta hydrolase
938	 68.30	0	989648..990808	+	386	87198964	-	Saro_0942	-	glycosyl transferase, group 1
939	 65.49	0	990938..991699	+	253	87198965	-	Saro_0943	-	hypothetical protein
940	 67.19	0	991721..993067	+	448	87198966	-	Saro_0944	-	Pyrrolo-quinoline quinone
941	 66.67	0	993110..994444	+	444	87198967	-	Saro_0945	-	isoprenylcysteine carboxyl methyltransferase
942	 55.72	-2	994592..994792	+	66	87198968	-	Saro_0946	-	hypothetical protein
943	 62.28	0	994872..995099	+	75	87198969	-	Saro_0947	-	hypothetical protein
944	 63.22	0	995096..995443	-	115	87198970	-	Saro_0948	-	antibiotic biosynthesis monooxygenase
945	 66.38	0	995490..996863	-	457	87198971	-	Saro_0949	-	glutamate--cysteine ligase
946	 67.44	0	996954..997730	-	258	87198972	-	Saro_0950	-	hypothetical protein
947	 68.63	+1	997752..998666	+	304	87198973	ubiA	Saro_0951	-	prenyltransferase
948	 66.31	0	998645..999490	-	281	87198974	-	Saro_0952	-	N-acetyltransferase
949	 64.81	0	999480..999857	-	125	87198975	-	Saro_0953	-	glyoxalase/bleomycin resistance protein/dioxygenase
950	 63.27	0	1000009..1000449	+	146	87198976	-	Saro_0954	-	MerR family transcriptional regulator
951	 70.44	+1	1000446..1003889	-	1147	87198977	-	Saro_0955	-	chromosome segregation protein SMC
952	 65.07	0	1003928..1004677	-	249	87198978	-	Saro_0956	-	protein-disulfide isomerase
953	 59.10	-1	1004992..1005348	+	118	87198979	-	Saro_0957	-	excinuclease ABC subunit C
954	 65.69	0	1005560..1006276	-	238	87198980	-	Saro_0958	-	protein-disulfide isomerase
955	 66.84	0	1006273..1006842	-	189	87198981	-	Saro_0959	-	hypothetical protein
956	 69.44	+1	1006872..1007951	+	359	87198982	-	Saro_0960	-	A/G-specific DNA-adenine glycosylase
957	 69.14	+1	1007956..1009251	+	431	87198983	-	Saro_0961	-	twin-arginine translocation pathway signal
958	 68.82	+1	1009251..1010132	+	293	87198984	-	Saro_0962	-	NUDIX hydrolase
959	 68.69	+1	1010129..1010821	+	230	87198985	-	Saro_0963	-	DSBA oxidoreductase
960	 64.95	0	1010832..1011239	-	135	87198986	-	Saro_0964	-	hypothetical protein
961	 65.63	0	1011254..1012699	-	481	87198987	-	Saro_0965	-	magnesium transporter
962	 64.47	0	1012810..1013265	+	151	87198988	-	Saro_0966	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
963	 68.77	+1	1013326..1014654	-	442	87198989	gltX	Saro_0967	-	glutamyl-tRNA synthetase
964	 70.34	+1	1014694..1015128	-	144	87198990	-	Saro_0968	-	hypothetical protein
965	 63.86	0	1015181..1015429	-	82	87198991	-	Saro_0969	-	hypothetical protein
966	 65.33	0	1015433..1017154	-	573	87198992	nadE	Saro_0970	-	NAD synthetase
967	 65.92	0	1017201..1018136	+	311	87198993	-	Saro_0971	-	ribose-phosphate pyrophosphokinase
968	 62.17	0	1018189..1018677	-	162	87198994	-	Saro_0972	-	hypothetical protein
969	 64.04	0	1018702..1019349	+	215	87198995	-	Saro_0973	-	TetR family transcriptional regulator
970	 66.56	0	1019333..1020274	-	313	87198996	-	Saro_0974	-	AraC family transcriptional regulator
971	 67.18	0	1020437..1021216	+	259	87198997	-	Saro_0975	-	inositol monophosphatase
972	 66.22	0	1021224..1021673	+	149	87198998	-	Saro_0976	-	hypothetical protein
973	 68.91	+1	1021670..1022071	-	133	87198999	-	Saro_0977	-	hypothetical protein
974	 64.40	0	1022068..1022949	-	293	87199000	-	Saro_0978	-	LysR family transcriptional regulator
975	 66.24	0	1022952..1023893	-	313	87199001	-	Saro_0979	-	CBS
976	 66.27	0	1023914..1024417	-	167	87199002	-	Saro_0980	-	hypothetical protein
977	 65.62	0	1024414..1025460	-	348	87199003	-	Saro_0981	-	PhoH-like protein
978	 66.44	0	1025606..1026937	-	443	87199004	-	Saro_0982	-	tRNA-i(6)A37 modification enzyme MiaB
979	 65.37	0	1026972..1027745	-	257	87199005	-	Saro_0983	-	lyso-ornithine lipid acyltransferase
980	 65.48	0	1027729..1028151	-	140	87199006	-	Saro_0984	-	ferric uptake regulator family protein
981	 60.50	-1	1028255..1028692	-	145	87199007	-	Saro_0985	-	MucR family transcriptional regulator
982	 56.54	-2	1028861..1029334	-	157	87199008	-	Saro_0986	-	GCN5-related N-acetyltransferase
983	 67.31	0	1029346..1029966	-	206	87199009	-	Saro_0987	-	peptidase M22, glycoprotease
984	 64.63	0	1029983..1030570	-	195	87199010	-	Saro_0988	-	nitrogen-fixing NifU-like
985	 68.79	+1	1030696..1031259	+	187	87199011	-	Saro_0989	-	peptidylprolyl isomerase, FKBP-type
986	 66.32	0	1031323..1034208	+	961	87199012	-	Saro_0990	-	peptidase M16-like
987	 65.43	0	1034325..1035698	+	457	87199013	-	Saro_0991	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
988	 68.86	+1	1035736..1036329	-	197	87199014	-	Saro_0992	-	TetR family transcriptional regulator
989	 67.35	0	1036419..1036859	-	146	87199015	-	Saro_0993	-	hypothetical protein
990	 64.62	0	1036891..1037967	-	358	87199016	-	Saro_0994	-	aminoglycoside phosphotransferase
991	 66.94	0	1037964..1039052	-	362	87199017	-	Saro_0995	-	alcohol dehydrogenase, zinc-containing
992	 66.13	0	1039072..1040364	-	430	87199018	-	Saro_0996	-	acyl-CoA dehydrogenase-like
993	 67.44	0	1040458..1041885	-	475	87199019	-	Saro_0997	-	Na+/melibiose symporter and related transporters-like
994	 66.67	0	1041882..1042730	-	282	87199020	-	Saro_0998	-	short-chain dehydrogenase/reductase SDR
995	 64.60	0	1042925..1044085	+	386	87199021	-	Saro_0999	-	acyl-CoA dehydrogenase-like
996	 65.00	0	1044089..1045228	+	379	87199022	-	Saro_1000	-	acyl-CoA dehydrogenase-like
997	 63.56	0	1045340..1046143	+	267	87199023	-	Saro_1001	-	short-chain dehydrogenase/reductase SDR
998	 68.24	0	1046149..1047036	+	295	87199024	-	Saro_1002	-	gluconolactonase
999	 65.77	0	1047044..1047709	-	221	87199025	-	Saro_1003	-	guanylate kinase
1000	 65.90	0	1047777..1048169	-	130	87199026	-	Saro_1004	-	hypothetical protein
1001	 63.47	0	1048204..1048704	-	166	87199027	-	Saro_1005	-	hypothetical protein
1002	 64.48	0	1048789..1049382	+	197	87199028	-	Saro_1006	-	imidazoleglycerol-phosphate dehydratase
1003	 67.62	0	1049375..1050004	+	209	87199029	hisH	Saro_1007	-	imidazole glycerol phosphate synthase subunit HisH
1004	 64.39	0	1050070..1051209	+	379	87199030	-	Saro_1008	-	hypothetical protein
1005	 65.01	0	1051232..1051957	+	241	87199031	-	Saro_1009	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1006	 68.09	0	1051962..1052735	+	257	87199032	-	Saro_1010	-	imidazole glycerol phosphate synthase subunit HisF
1007	 66.36	0	1053185..1053508	+	107	87199033	-	Saro_1011	-	phosphoribosyl-ATP pyrophosphatase
1008	 64.02	0	1053510..1053887	+	125	87199034	-	Saro_1012	-	histidine triad (HIT) protein
1009	 66.45	0	1053963..1054427	+	154	87199035	-	Saro_1013	-	4-hydroxybenzoyl-CoA thioesterase
1010	 66.10	0	1054424..1055125	+	233	87199036	-	Saro_1014	-	MotA/TolQ/ExbB proton channel
1011	 68.43	0	1055129..1055581	+	150	87199037	-	Saro_1015	-	biopolymer transport protein ExbD/TolR
1012	 70.41	+1	1055592..1056473	+	293	87199038	-	Saro_1016	-	hypothetical protein
1013	 65.95	0	1056470..1057855	+	461	87199039	tolB	Saro_1017	-	translocation protein TolB
1014	 67.64	0	1057969..1058481	+	170	87199040	-	Saro_1018	-	OmpA/MotB
1015	 66.67	0	1058602..1059135	+	177	87199041	-	Saro_1019	-	heat shock protein DnaJ-like
1016	 62.63	0	1059132..1060022	+	296	87199042	-	Saro_1020	-	phytanoyl-CoA dioxygenase
1017	 68.00	0	1059940..1061142	-	400	87199043	-	Saro_1021	-	polynucleotide adenylyltransferase region
1018	 66.67	0	1061135..1061749	-	204	87199044	-	Saro_1022	-	NUDIX hydrolase
1019	 67.54	0	1061746..1062315	-	189	87199045	-	Saro_1023	-	hypothetical protein
1020	 66.48	0	1062338..1062874	-	178	87199046	-	Saro_1024	-	acetyltransferase-like
1021	 65.40	0	1063077..1064498	+	473	87199047	-	Saro_1025	-	cytochrome bd ubiquinol oxidase, subunit I
1022	 66.67	0	1064498..1065496	+	332	87199048	-	Saro_1026	-	cytochrome d ubiquinol oxidase, subunit II
1023	 66.05	0	1065483..1065644	+	53	87199049	-	Saro_1027	-	hypothetical protein
1024	 67.53	0	1065625..1067019	-	464	87199050	-	Saro_1028	-	XRE family transcriptional regulator
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.