IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
871	 67.05	0	930813..931592	-	259	87198897	-	Saro_0875	-	short chain dehydrogenase
872	 65.19	0	931664..932206	-	180	87198898	-	Saro_0876	-	NUDIX hydrolase
873	 66.81	0	932203..932898	-	231	87198899	-	Saro_0877	-	hypothetical protein
874	 69.52	+1	932898..933737	-	279	87198900	-	Saro_0878	-	hypothetical protein
875	 66.51	0	933739..934365	-	208	87198901	-	Saro_0879	-	hypothetical protein
876	 62.61	0	934521..934988	+	155	87198902	-	Saro_0880	-	large conductance mechanosensitive channel protein
877	 66.67	0	935440..935685	-	81	87198903	-	Saro_0881	-	hypothetical protein
878	 70.22	+1	935831..937096	-	421	87198904	-	Saro_0882	-	succinylarginine dihydrolase
879	 66.47	0	937249..938286	-	345	87198905	-	Saro_0883	-	arginine succinyltransferase
880	 69.89	+1	938283..939491	-	402	87198906	-	Saro_0884	-	hypothetical protein
881	 66.43	0	939719..941863	+	714	87198907	-	Saro_0885	-	malate synthase G
882	 67.03	0	941886..942707	-	273	87198908	ksgA	Saro_0886	-	dimethyladenosine transferase
883	 71.13	+1	942704..943711	-	335	87198909	-	Saro_0887	-	4-hydroxythreonine-4-phosphate dehydrogenase
884	 66.52	0	943788..945158	-	456	87198910	-	Saro_0888	-	PpiC-type peptidyl-prolyl cis-trans isomerase
885	 67.68	0	945287..947557	-	756	87198911	-	Saro_0889	-	organic solvent tolerance protein
886	 68.52	+1	947659..949116	+	485	87198912	-	Saro_0890	-	leucyl aminopeptidase
887	 62.75	0	949181..949333	+	50	87198913	-	Saro_0891	-	hypothetical protein
888	 71.06	+1	949333..949764	+	143	87198914	-	Saro_0892	-	DNA polymerase III chi subunit, HolC
889	 63.33	0	949958..950257	-	99	87198915	-	Saro_0893	-	excinuclease ABC subunit C
890	 62.41	0	950467..950889	+	140	87198916	-	Saro_0894	-	nucleoside diphosphate kinase
891	 64.46	0	951145..953454	+	769	87198917	-	Saro_0895	-	TonB-dependent receptor
892	 60.71	-1	953540..953791	+	83	87198918	-	Saro_0896	-	hypothetical protein
893	 68.96	+1	953832..954965	-	377	87198919	-	Saro_0897	-	hypothetical protein
894	 67.01	0	954970..955557	-	195	87198920	-	Saro_0898	-	phosphoribosylglycinamide formyltransferase
895	 66.49	0	955550..956656	-	368	87198921	-	Saro_0899	-	phosphoribosylaminoimidazole synthetase
896	 69.58	+1	956793..958061	+	422	87198922	-	Saro_0900	-	hypothetical protein
897	 66.67	0	958095..958709	+	204	87198923	-	Saro_0901	-	ATPase
898	 67.36	0	958737..959459	+	240	87198924	-	Saro_0902	-	Serine O-acetyltransferase
899	 68.86	+1	959555..959827	+	90	87198925	-	Saro_0903	-	hypothetical protein
900	 67.63	0	959841..960254	-	137	87198926	-	Saro_0904	-	phenylacetic acid degradation-related protein
901	 66.07	0	960251..960754	-	167	87198927	-	Saro_0905	-	phenylacetic acid degradation-related protein
902	 68.16	0	960808..961275	-	155	87198928	-	Saro_0906	-	Holliday junction resolvase YqgF
903	 70.25	+1	961272..962387	-	371	87198929	-	Saro_0907	-	hypothetical protein
904	 67.13	0	962391..963458	-	355	87198930	-	Saro_0908	-	hypothetical protein
905	 67.33	0	963464..964369	-	301	87198931	-	Saro_0909	-	signal peptidase I
906	 67.65	0	964366..964773	-	135	87198932	acpS	Saro_0910	-	4'-phosphopantetheinyl transferase
907	 70.16	+1	964782..965525	-	247	87198933	-	Saro_0911	-	pyridoxal phosphate biosynthetic protein PdxJ
908	 68.21	0	965522..966106	-	194	87198934	pyrE	Saro_0912	-	orotate phosphoribosyltransferase
909	 67.52	0	966385..967434	+	349	87198935	-	Saro_0913	-	cytochrome-c oxidase
910	 62.34	0	967462..969150	+	562	87198936	-	Saro_0914	-	cytochrome-c oxidase
911	 66.23	0	969351..970265	+	304	87198937	-	Saro_0915	-	protoheme IX farnesyltransferase
912	 64.91	0	970267..970437	+	56	87198938	-	Saro_0916	-	hypothetical protein
913	 64.29	0	970439..971068	+	209	87198939	-	Saro_0917	-	cytochrome C oxidase assembly protein
914	 61.92	-1	971151..971972	+	273	87198940	-	Saro_0918	-	cytochrome c oxidase, subunit III
915	 66.13	0	971972..972343	+	123	87198941	-	Saro_0919	-	hypothetical protein
916	 67.18	0	972343..972927	+	194	87198942	-	Saro_0920	-	hypothetical protein
917	 66.95	0	973079..974500	+	473	87198943	-	Saro_0921	-	threonine synthase
918	 67.01	0	974493..975377	+	294	87198944	-	Saro_0922	-	SAM-dependent methyltransferase
919	 59.29	-1	975413..975805	+	130	87198945	-	Saro_0923	-	dihydroneopterin aldolase-like protein
920	 67.33	0	975805..976563	+	252	87198946	-	Saro_0924	-	short-chain dehydrogenase/reductase SDR
921	 68.53	+1	976560..977579	+	339	87198947	-	Saro_0925	-	GTP cyclohydrolase subunit MoaA
922	 66.67	0	977579..977815	+	78	87198948	-	Saro_0926	-	thiamineS
923	 67.79	0	977817..978263	+	148	87198949	-	Saro_0927	-	molybdopterin synthase subunit MoaE
924	 70.00	+1	978281..978910	-	209	87198950	-	Saro_0928	-	hypothetical protein
925	 63.30	0	979072..979368	+	98	87198951	rplU	Saro_0929	-	50S ribosomal protein L21
926	 65.93	0	979395..979664	+	89	87198952	rpmA	Saro_0930	-	50S ribosomal protein L27
927	 71.05	+1	979898..980467	+	189	87198953	-	Saro_0931	-	GCN5-related N-acetyltransferase
928	 64.75	0	980516..981400	-	294	87198954	-	Saro_0932	-	FF domain-containing protein
929	 66.16	0	981438..982028	+	196	87198955	-	Saro_0933	-	TetR family transcriptional regulator
930	 66.53	0	982012..982758	-	248	87198956	-	Saro_0934	-	aminomethyl transferase
931	 65.71	0	982797..983837	+	346	87198957	-	Saro_0935	-	dihydroorotase
932	 66.89	0	983841..984728	-	295	87198958	-	Saro_0936	-	rarD protein
933	 71.31	+1	984937..985431	+	164	87198959	-	Saro_0937	-	17 kDa surface antigen
934	 69.30	+1	985557..985784	+	75	87198960	-	Saro_0938	-	hypothetical protein
935	 67.51	0	985781..987196	-	471	87198961	-	Saro_0939	-	succinylglutamic semialdehyde dehydrogenase
936	 67.87	0	987315..988724	-	469	87198962	-	Saro_0940	-	hypothetical protein
937	 66.78	0	988797..989651	+	284	87198963	-	Saro_0941	-	alpha/beta hydrolase
938	 68.30	0	989648..990808	+	386	87198964	-	Saro_0942	-	glycosyl transferase, group 1
939	 65.49	0	990938..991699	+	253	87198965	-	Saro_0943	-	hypothetical protein
940	 67.19	0	991721..993067	+	448	87198966	-	Saro_0944	-	Pyrrolo-quinoline quinone
941	 66.67	0	993110..994444	+	444	87198967	-	Saro_0945	-	isoprenylcysteine carboxyl methyltransferase
942	 55.72	-2	994592..994792	+	66	87198968	-	Saro_0946	-	hypothetical protein
943	 62.28	0	994872..995099	+	75	87198969	-	Saro_0947	-	hypothetical protein
944	 63.22	0	995096..995443	-	115	87198970	-	Saro_0948	-	antibiotic biosynthesis monooxygenase
945	 66.38	0	995490..996863	-	457	87198971	-	Saro_0949	-	glutamate--cysteine ligase
946	 67.44	0	996954..997730	-	258	87198972	-	Saro_0950	-	hypothetical protein
947	 68.63	+1	997752..998666	+	304	87198973	ubiA	Saro_0951	-	prenyltransferase
948	 66.31	0	998645..999490	-	281	87198974	-	Saro_0952	-	N-acetyltransferase
949	 64.81	0	999480..999857	-	125	87198975	-	Saro_0953	-	glyoxalase/bleomycin resistance protein/dioxygenase
950	 63.27	0	1000009..1000449	+	146	87198976	-	Saro_0954	-	MerR family transcriptional regulator
951	 70.44	+1	1000446..1003889	-	1147	87198977	-	Saro_0955	-	chromosome segregation protein SMC
952	 65.07	0	1003928..1004677	-	249	87198978	-	Saro_0956	-	protein-disulfide isomerase
953	 59.10	-1	1004992..1005348	+	118	87198979	-	Saro_0957	-	excinuclease ABC subunit C
954	 65.69	0	1005560..1006276	-	238	87198980	-	Saro_0958	-	protein-disulfide isomerase
955	 66.84	0	1006273..1006842	-	189	87198981	-	Saro_0959	-	hypothetical protein
956	 69.44	+1	1006872..1007951	+	359	87198982	-	Saro_0960	-	A/G-specific DNA-adenine glycosylase
957	 69.14	+1	1007956..1009251	+	431	87198983	-	Saro_0961	-	twin-arginine translocation pathway signal
958	 68.82	+1	1009251..1010132	+	293	87198984	-	Saro_0962	-	NUDIX hydrolase
959	 68.69	+1	1010129..1010821	+	230	87198985	-	Saro_0963	-	DSBA oxidoreductase
960	 64.95	0	1010832..1011239	-	135	87198986	-	Saro_0964	-	hypothetical protein
961	 65.63	0	1011254..1012699	-	481	87198987	-	Saro_0965	-	magnesium transporter
962	 64.47	0	1012810..1013265	+	151	87198988	-	Saro_0966	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
963	 68.77	+1	1013326..1014654	-	442	87198989	gltX	Saro_0967	-	glutamyl-tRNA synthetase
964	 70.34	+1	1014694..1015128	-	144	87198990	-	Saro_0968	-	hypothetical protein
965	 63.86	0	1015181..1015429	-	82	87198991	-	Saro_0969	-	hypothetical protein
966	 65.33	0	1015433..1017154	-	573	87198992	nadE	Saro_0970	-	NAD synthetase
967	 65.92	0	1017201..1018136	+	311	87198993	-	Saro_0971	-	ribose-phosphate pyrophosphokinase
968	 62.17	0	1018189..1018677	-	162	87198994	-	Saro_0972	-	hypothetical protein
969	 64.04	0	1018702..1019349	+	215	87198995	-	Saro_0973	-	TetR family transcriptional regulator
970	 66.56	0	1019333..1020274	-	313	87198996	-	Saro_0974	-	AraC family transcriptional regulator
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.