version 1.0
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 21 68.48 0 16582..17574 + 330 87198047 glpX Saro_0021 - fructose 1,6-bisphosphatase II 22 61.45 -1 17734..19323 + 529 87198048 - Saro_0022 - hypothetical protein 23 64.24 0 19422..23705 - 1427 87198049 - Saro_0023 - DNA-directed RNA polymerase subunit beta' 24 64.49 0 23796..27974 - 1392 87198050 rpoB Saro_0024 - DNA-directed RNA polymerase subunit beta 25 70.63 +1 28418..29299 + 293 87198051 - Saro_0025 - hypothetical protein 26 74.51 +2 29522..29674 + 50 87198052 - Saro_0026 - hypothetical protein 27 62.71 0 29703..30233 + 176 87198053 - Saro_0027 - hypothetical protein 28 62.61 0 30233..30454 + 73 87198054 - Saro_0028 - XRE family transcriptional regulator 29 65.11 0 30749..31261 + 170 87198055 rplJ Saro_0029 - 50S ribosomal protein L10 30 61.02 -1 31331..31702 + 123 87198056 rplL Saro_0030 - 50S ribosomal protein L7/L12 31 67.78 0 31788..33140 - 450 87198057 - Saro_0031 - periplasmic sensor signal transduction histidine kinase 32 66.46 0 33228..33710 - 160 87198058 - Saro_0032 - cytochrome c, class I 33 69.32 +1 33831..35222 + 463 87198059 - Saro_0033 - MATE efflux family protein 34 63.54 0 35373..35660 + 95 87198060 - Saro_0034 - chaperonin Cpn10 35 64.84 0 35710..37353 + 547 87198061 groEL Saro_0035 - chaperonin GroEL 36 67.21 0 37528..39198 + 556 87198062 - Saro_0036 - histidine kinase 37 67.40 0 39195..39740 - 181 87198063 - Saro_0037 - GCN5-related N-acetyltransferase 38 68.24 0 39737..40942 - 401 87198064 - Saro_0038 - hypothetical protein 39 65.13 0 41050..44232 - 1060 87198065 - Saro_0039 - acriflavin resistance protein 40 70.09 +1 44243..45412 - 389 87198066 - Saro_0040 - secretion protein HlyD 41 65.00 0 45711..46010 - 99 87198067 - Saro_0041 - hypothetical protein 42 63.66 0 46025..46357 - 110 87198068 - Saro_0042 - hypothetical protein 43 69.78 +1 46499..47653 + 384 87198069 - Saro_0043 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 44 68.46 0 47669..48058 - 129 87198070 - Saro_0044 - hypothetical protein 45 67.91 0 48084..49208 + 374 87198071 - Saro_0045 - beta-lactamase 46 70.22 +1 49205..50020 - 271 87198072 - Saro_0046 - phenazine biosynthesis PhzC/PhzF protein 47 66.67 0 50017..50994 - 325 87198073 - Saro_0047 - cation diffusion facilitator family transporter 48 66.67 0 51006..51617 - 203 87198074 - Saro_0048 - pyridoxamine 5'-phosphate oxidase 49 67.48 0 51839..52816 + 325 87198075 - Saro_0049 - heat shock protein DnaJ-like 50 65.31 0 52820..53854 + 344 87198076 - Saro_0050 - ribonuclease BN 51 63.43 0 53851..54654 + 267 87198077 - Saro_0051 - enoyl-[acyl-carrier-protein] reductase [NADH] 52 67.01 0 54739..55320 - 193 87198078 - Saro_0052 - hypothetical protein 53 68.23 0 55425..55937 - 170 87198079 - Saro_0053 - ubiquinone biosynthesis protein COQ7 54 67.49 0 55939..56421 - 160 87198080 - Saro_0054 - disulphide bond formation protein DsbB 55 66.59 0 56435..57826 - 463 87198081 - Saro_0055 - C-terminal processing peptidase-3 56 73.01 +2 57928..59172 - 414 87198082 - Saro_0056 - peptidase M23B 57 67.84 0 59181..59606 - 141 87198083 - Saro_0057 - hypothetical protein 58 64.50 0 59701..60162 - 153 87198084 - Saro_0058 - Iojap-related protein 59 69.58 +1 60203..60889 - 228 87198085 nadD Saro_0059 - nicotinic acid mononucleotide adenylyltransferase 60 70.42 +1 60853..62130 - 425 87198086 - Saro_0060 - glutamate-5-semialdehyde dehydrogenase 61 67.61 0 62365..63528 + 387 87198087 - Saro_0061 - peptidase M23B 62 68.66 +1 63536..63886 + 116 87198088 - Saro_0062 - hypothetical protein 63 67.38 0 64024..64728 + 234 87198089 - Saro_0063 - hypothetical protein 64 67.27 0 64795..65796 - 333 87198090 - Saro_0064 - alcohol dehydrogenase 65 65.89 0 65835..66218 - 127 87198091 - Saro_0065 - hypothetical protein 66 65.24 0 66339..68717 + 792 87198092 - Saro_0066 - ATP dependent Clp protease 67 69.46 +1 68777..69850 + 357 87198093 - Saro_0067 - putative mRNA 3-end processing factor 68 67.17 0 69911..71506 + 531 87198094 - Saro_0068 - ATP-dependent DNA ligase 69 67.93 0 71824..72219 + 131 87198095 - Saro_0069 - globin 70 70.58 +1 72269..72907 + 212 87198096 - Saro_0070 - hypothetical protein 71 70.14 +1 72885..73172 - 95 87198097 - Saro_0071 - hypothetical protein 72 67.02 0 73153..73716 - 187 87198098 - Saro_0072 - transferase 73 66.97 0 73731..74723 - 330 87198099 - Saro_0073 - delta-aminolevulinic acid dehydratase 74 71.47 +1 74760..76301 - 513 87198100 - Saro_0074 - peptidase M23B 75 64.92 0 76481..77512 + 343 87198101 - Saro_0075 - hypothetical protein 76 65.43 0 77647..79581 - 644 87198102 - Saro_0076 - membrane protease FtsH catalytic subunit 77 69.32 +1 79691..80671 - 326 87198103 - Saro_0077 - tRNA(Ile)-lysidine synthetase-like 78 68.90 +1 80685..81668 - 327 87198104 - Saro_0078 - hypothetical protein 79 69.76 +1 81777..82778 - 333 87198105 - Saro_0079 - hypothetical protein 80 67.28 0 82906..85185 - 759 87198106 - Saro_0080 - phosphoenolpyruvate-protein phosphotransferase PtsP 81 58.49 -2 85389..85547 - 52 87198107 - Saro_0081 - hypothetical protein 82 58.59 -2 85777..85974 + 65 87198108 - Saro_0082 - hypothetical protein 83 69.26 +1 86066..86605 + 179 87198109 - Saro_0083 - hypothetical protein 84 68.91 +1 86610..88079 - 489 87198110 - Saro_0084 - glycerol kinase 85 69.46 +1 88076..89545 - 489 87198111 - Saro_0085 - glycerol-3-phosphate dehydrogenase 86 68.16 0 89584..90519 + 311 87198112 - Saro_0086 - beta-lactamase-like 87 64.86 0 90501..91166 + 221 87198113 - Saro_0087 - hypothetical protein 88 64.75 0 91248..91976 + 242 87198114 - Saro_0088 - hypothetical protein 89 64.06 0 92038..93036 + 332 87198115 - Saro_0089 - quinolinate synthetase 90 67.90 0 93172..94065 - 297 87198116 - Saro_0090 - hypothetical protein 91 66.21 0 94149..95252 + 367 87198117 - Saro_0091 - NADH:flavin oxidoreductase/NADH oxidase 92 67.12 0 95267..96148 + 293 87198118 - Saro_0092 - HpcH/HpaI aldolase 93 70.23 +1 96131..96439 - 102 87198119 - Saro_0093 - hypothetical protein 94 66.82 0 96436..97104 - 222 87198120 - Saro_0094 - lipoate-protein ligase B 95 64.72 0 97182..98003 + 273 87198121 - Saro_0095 - hypothetical protein 96 63.96 0 98012..98638 - 208 87198122 - Saro_0096 - generic methyltransferase 97 67.95 0 98769..100091 + 440 87198123 - Saro_0097 - major facilitator transporter 98 67.98 0 100138..101661 + 507 87198124 - Saro_0098 - O-antigen and teichoic acid-like export protein 99 66.35 0 101654..102610 - 318 87198125 - Saro_0099 - CDP-alcohol phosphatidyltransferase 100 67.40 0 102849..103934 + 361 87198126 - Saro_0100 - CDP-alcohol phosphatidyltransferase 101 63.76 0 104030..105130 + 366 87198127 - Saro_0101 - myo-inositol-1-phosphate synthase 102 66.53 0 105225..105974 + 249 87198128 - Saro_0102 - nucleotidyl transferase 103 64.24 0 106017..106511 - 164 87198129 - Saro_0103 - hypothetical protein 104 64.09 0 106888..107547 + 219 87198130 - Saro_0104 - ribulose-5-phosphate 3-epimerase 105 67.73 0 107549..109435 + 628 87198131 - Saro_0105 - heparinase II/III-like 106 65.79 0 109446..111035 + 529 87198132 purH Saro_0106 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 107 67.01 0 111131..112870 + 579 87198133 - Saro_0107 - CBS 108 62.38 0 112945..113574 - 209 87198134 - Saro_0108 - cell wall hydrolase, SleB 109 54.09 -2 113790..114131 - 113 87198135 - Saro_0109 - hypothetical protein 110 66.25 0 114133..114615 - 160 87198136 - Saro_0110 - phenylacetic acid degradation-related protein 111 65.37 0 114602..115063 - 153 87198137 - Saro_0111 - PTS IIA-like nitrogen-regulatory protein PtsN 112 61.86 -1 115237..115818 - 193 87198138 - Saro_0112 - SSU ribosomal protein S30P / sigma 54 modulation protein 113 64.07 0 115877..116569 - 230 87198139 - Saro_0113 - DNA polymerase III, epsilon subunit 114 65.18 0 116615..117220 - 201 87198140 - Saro_0114 - dephospho-CoA kinase 115 64.15 0 117217..118089 - 290 87198141 - Saro_0115 - shikimate dehydrogenase 116 62.07 -1 118086..118673 - 195 87198142 - Saro_0116 - Maf-like protein 117 60.85 -1 118670..119512 - 280 87198143 - Saro_0117 - hypothetical protein 118 63.26 0 119850..120875 + 341 87198144 - Saro_0118 - uroporphyrinogen decarboxylase 119 58.45 -2 120973..121398 + 141 87198145 - Saro_0119 - hypothetical protein 120 60.78 -1 121800..123056 + 418 87198146 rho Saro_0120 - transcription termination factor Rho 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.