IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
510	 63.05	0	553249..553995	-	248	87198536	-	Saro_0512	-	short-chain dehydrogenase/reductase SDR
511	 65.19	0	554310..555392	+	360	87198537	-	Saro_0513	-	alcohol dehydrogenase, zinc-containing
512	 62.40	0	555434..556699	+	421	87198538	-	Saro_0514	-	cytochrome P450
513	 62.73	0	556696..557178	+	160	87198539	-	Saro_0515	-	flavin reductase-like, FMN-binding
514	 61.90	-1	557175..557762	-	195	87198540	-	Saro_0516	-	TetR family transcriptional regulator
515	 63.03	0	557813..558748	-	311	87198541	-	Saro_0517	-	gluconolactonase
516	 63.58	0	558851..559693	-	280	87198542	-	Saro_0518	-	enoyl-CoA hydratase/isomerase
517	 62.65	0	559882..561576	+	564	87198543	-	Saro_0519	-	AMP-dependent synthetase and ligase
518	 63.18	0	561623..562768	+	381	87198544	-	Saro_0520	-	GTP cyclohydrolase II
519	 61.56	-1	562789..563454	-	221	87198545	-	Saro_0521	-	TetR family transcriptional regulator
520	 60.27	-1	563635..564759	+	374	87198546	-	Saro_0522	-	luciferase-like
521	 60.90	-1	564837..567248	+	803	87198547	-	Saro_0523	-	TonB-dependent receptor
522	 59.20	-1	567592..567765	-	57	87198548	-	Saro_0524	-	hypothetical protein
523	 57.69	-2	567941..568564	-	207	87198549	-	Saro_0525	-	hypothetical protein
524	 58.03	-2	568674..570248	+	524	87198550	-	Saro_0526	-	recombinase
525	 58.78	-2	570248..571147	+	299	87198551	-	Saro_0527	-	ParB family protein
526	 56.67	-2	571140..572099	+	319	87198552	-	Saro_0528	-	RepB plasmid partition
527	 56.51	-2	572780..573094	-	104	87198553	-	Saro_0529	-	hypothetical protein
528	 63.18	0	573909..575255	+	448	87198554	-	Saro_0530	-	hypothetical protein
529	 65.01	0	575338..576366	-	342	87198555	-	Saro_0531	-	acyltransferase 3
530	 62.12	0	576491..577765	-	424	87198556	-	Saro_0532	-	TetR family transcriptional regulator
531	 64.20	0	577801..580191	-	796	87198557	-	Saro_0533	-	sulfatase
532	 65.61	0	580304..582577	+	757	87198558	-	Saro_0534	-	sulfatase
533	 63.62	0	582643..585204	+	853	87198559	-	Saro_0535	-	TonB-dependent receptor
534	 63.50	0	585343..586290	+	315	87198560	-	Saro_0536	-	hypothetical protein
535	 64.40	0	586351..587277	-	308	87198561	-	Saro_0537	-	LysR family transcriptional regulator
536	 63.52	0	587562..588896	+	444	87198562	-	Saro_0538	-	Rieske (2Fe-2S) protein
537	 59.47	-1	588893..589378	+	161	87198563	-	Saro_0539	-	2-chlorobenzoate 1,2-dioxygenase
538	 67.30	0	589371..590162	+	263	87198564	benD	Saro_0540	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
539	 66.12	0	590232..591146	+	304	87198565	-	Saro_0541	-	LysR family transcriptional regulator
540	 64.92	0	591233..592552	+	439	87198566	-	Saro_0542	-	glycoside hydrolase family protein
541	 66.28	0	592634..593659	+	341	87198567	-	Saro_0543	-	galactose-1-phosphate uridylyltransferase
542	 69.03	+1	593656..594798	+	380	87198568	-	Saro_0544	-	galactokinase
543	 64.49	0	594815..597991	-	1058	87198569	-	Saro_0545	-	Outer membrane autotransporter barrel protein
544	 65.43	0	598289..598936	+	215	87198570	-	Saro_0546	-	RNA polymerase sigma factor
545	 76.32	+2	598936..599712	+	258	87198571	-	Saro_0547	-	hypothetical protein
546	 65.45	0	599767..600258	+	163	87198572	-	Saro_0548	-	asparaginase
547	 68.31	0	600266..600691	-	141	87198573	-	Saro_0549	-	putative acetyltransferase
548	 65.06	0	600682..602304	-	540	87198574	guaA	Saro_0550	-	bifunctional GMP synthase/glutamine amidotransferase protein
549	 68.79	+1	602665..603510	+	281	87198575	-	Saro_0551	-	glutamyl-tRNA synthetase, class Ic
550	 58.87	-2	603507..603737	+	76	87198576	-	Saro_0552	-	hypothetical protein
551	 67.56	0	603757..604317	+	186	87198577	-	Saro_0553	-	ATP:cob(I)alamin adenosyltransferase
552	 63.23	0	604391..605263	+	290	87198578	-	Saro_0554	-	3-hydroxyacyl-CoA dehydrogenase
553	 70.25	+1	605322..605684	+	120	87198579	-	Saro_0555	-	hypothetical protein
554	 68.97	+1	605947..606336	-	129	87198580	-	Saro_0556	-	hypothetical protein
555	 68.06	0	606585..607016	+	143	87198581	-	Saro_0557	-	nuclease (SNase-like)
556	 65.09	0	607023..607658	-	211	87198582	-	Saro_0558	-	TetR family transcriptional regulator
557	 66.95	0	607830..609581	+	583	87198583	-	Saro_0559	-	5'-nucleotidase
558	 68.55	+1	609600..610397	-	265	87198584	-	Saro_0560	-	hypothetical protein
559	 64.54	0	610390..611001	-	203	87198585	-	Saro_0561	-	phospholipid/glycerol acyltransferase
560	 63.72	0	611046..611723	-	225	87198586	-	Saro_0562	-	hypothetical protein
561	 65.99	0	611833..612276	+	147	87198587	-	Saro_0563	-	hypothetical protein
562	 68.42	0	612277..612960	-	227	87198588	-	Saro_0564	-	glutathione S-transferase-like
563	 66.67	0	612965..613513	-	182	87198589	-	Saro_0565	-	glutathione peroxidase
564	 64.09	0	613531..614190	-	219	87198590	-	Saro_0566	-	butyryl-CoA:acetate CoA transferase
565	 72.13	+2	614213..615109	-	298	87198591	-	Saro_0567	-	hypothetical protein
566	 64.28	0	615106..615816	-	236	87198592	-	Saro_0568	-	3-oxoacid CoA-transferase, subunit A
567	 67.35	0	615911..616783	+	290	87198593	-	Saro_0569	-	LysR family transcriptional regulator
568	 67.29	0	616832..617476	-	214	87198594	-	Saro_0570	-	epoxide hydrolase domain-containing phosphatase
569	 66.79	0	617619..618398	+	259	87198595	-	Saro_0571	-	hypothetical protein
570	 70.44	+1	618437..618913	+	158	87198596	-	Saro_0572	-	membrane protein-like
571	 68.35	0	619329..621647	+	772	87198597	-	Saro_0573	-	AAA family ATPase, CDC48 subfamily protein
572	 68.88	+1	621723..623030	-	435	87198598	-	Saro_0574	-	signal transduction histidine kinase
573	 72.59	+2	623203..623337	+	44	87198599	-	Saro_0575	-	50S ribosomal protein L34P
574	 68.30	0	623374..623862	+	162	87198600	-	Saro_0576	-	ribonuclease P protein component
575	 65.24	0	623859..624068	+	69	87198601	-	Saro_0577	-	hypothetical protein
576	 63.95	0	624133..625935	+	600	87198602	-	Saro_0578	-	putative inner membrane protein translocase component YidC
577	 65.60	0	625932..626585	+	217	87198603	-	Saro_0579	-	GTPase EngB
578	 66.22	0	626906..627580	+	224	87198604	-	Saro_0580	-	glutathione S-transferase-like
579	 68.44	0	627580..628707	+	375	87198605	-	Saro_0581	-	succinyl-diaminopimelate desuccinylase
580	 74.52	+2	628691..629263	-	190	87198606	-	Saro_0582	-	Smr protein/MutS2
581	 71.24	+1	629263..630486	-	407	87198607	-	Saro_0583	-	MltA
582	 67.20	0	630495..631238	-	247	87198608	-	Saro_0584	-	import inner membrane translocase, subunit Tim44
583	 62.14	0	631271..631513	+	80	87198609	-	Saro_0585	-	hypothetical protein
584	 64.76	0	631524..631994	+	156	87198610	-	Saro_0586	-	protein translocase subunit secB
585	 67.81	0	632025..633596	+	523	87198611	-	Saro_0587	-	integral membrane protein MviN
586	 65.78	0	633608..634627	+	339	87198612	-	Saro_0588	-	tryptophanyl-tRNA synthetase
587	 63.81	0	634798..635496	+	232	87198613	-	Saro_0589	-	hypothetical protein
588	 68.78	+1	635565..636038	-	157	87198614	-	Saro_0590	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
589	 69.19	+1	636019..637206	-	395	87198615	-	Saro_0591	-	phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase
590	 67.92	0	637311..637709	+	132	87198616	-	Saro_0592	-	hypothetical protein
591	 65.39	0	637714..638733	-	339	87198617	-	Saro_0593	-	acyltransferase 3
592	 68.27	0	638968..640527	-	519	87198618	-	Saro_0594	-	2-octaprenylphenol hydroxylase
593	 65.18	0	640532..641269	-	245	87198619	-	Saro_0595	-	demethylmenaquinone methyltransferase / 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase
594	 67.53	0	641330..642142	+	270	87198620	-	Saro_0596	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
595	 65.41	0	642174..643286	-	370	87198621	-	Saro_0597	-	4-hydroxyphenylpyruvate dioxygenase
596	 65.89	0	643385..643897	+	170	87198622	-	Saro_0598	-	AsnC family transcriptional regulator
597	 66.99	0	644032..644970	+	312	87198623	-	Saro_0599	-	LysR family transcriptional regulator
598	 62.21	0	645059..645979	+	306	87198624	-	Saro_0600	-	sterol desaturase-like
599	 68.95	+1	645976..647553	+	525	87198625	-	Saro_0601	-	sulfotransferase
600	 66.67	0	647570..647929	+	119	87198626	-	Saro_0602	-	hypothetical protein
601	 66.10	0	648031..648384	+	117	87198627	-	Saro_0603	-	hypothetical protein
602	 69.35	+1	648439..649371	-	310	87198628	-	Saro_0604	-	hypothetical protein
603	 69.77	+1	649374..651143	-	589	87198629	-	Saro_0605	-	amidase
604	 67.56	0	651140..654733	-	1197	87198630	-	Saro_0606	-	allophanate hydrolase subunit 2
605	 64.15	0	654730..655365	-	211	87198631	-	Saro_0607	-	hypothetical protein
606	 68.85	+1	655382..656206	-	274	87198632	-	Saro_0608	-	hypothetical protein
607	 67.30	0	656203..656679	-	158	87198633	-	Saro_0609	-	CopG family transcriptional regulator
608	 69.64	+1	656681..657487	-	268	87198634	-	Saro_0610	-	ABC transporter related
609	 66.91	0	657484..658299	-	271	87198635	-	Saro_0611	-	binding-protein-dependent transport systems inner membrane component
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.