IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
433	 71.69	+1	471997..472533	+	178	87198459	-	Saro_0434	-	thiamine monophosphate synthase
434	 66.92	0	472628..475009	+	793	87198460	-	Saro_0435	-	DNA translocase FtsK
435	 67.17	0	475017..475415	-	132	87198461	-	Saro_0436	-	thioesterase-like
436	 64.88	0	475412..477487	-	691	87198462	-	Saro_0437	-	oligopeptidase B
437	 68.33	0	477544..479349	+	601	87198463	-	Saro_0438	-	peptidase M24
438	 66.12	0	479405..479773	+	122	87198464	-	Saro_0439	-	glyoxalase/bleomycin resistance protein/dioxygenase
439	 64.46	0	480001..480681	+	226	87198465	-	Saro_0440	-	calcium-binding EF-hand protein
440	 63.96	0	480687..481424	+	245	87198466	-	Saro_0441	-	two component transcriptional regulator
441	 68.96	+1	481428..482825	+	465	87198467	-	Saro_0442	-	periplasmic sensor signal transduction histidine kinase
442	 66.70	0	482963..485629	+	888	87198468	-	Saro_0443	-	peptidase M1, membrane alanine aminopeptidase
443	 66.22	0	485699..487273	-	524	87198469	-	Saro_0444	-	protein of unknown function DUF853, NPT hydrolase putative
444	 68.74	+1	487393..489180	+	595	87198470	-	Saro_0445	-	para-aminobenzoate synthase, component I
445	 68.21	0	489185..490354	+	389	87198471	-	Saro_0446	-	aminotransferase
446	 66.82	0	490351..491019	+	222	87198472	-	Saro_0447	-	pseudouridylate synthase
447	 66.91	0	491021..491434	+	137	87198473	-	Saro_0448	-	class I peptide chain release factor domain-containing protein
448	 67.68	0	491483..492766	-	427	87198474	-	Saro_0449	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
449	 63.90	0	492864..493802	+	312	87198475	-	Saro_0450	-	UDP-glucose pyrophosphorylase
450	 66.07	0	493816..494490	-	224	87198476	-	Saro_0451	-	TetR family transcriptional regulator
451	 67.56	0	494678..495793	+	371	87198477	-	Saro_0452	-	oxidoreductase-like
452	 65.44	0	495805..496860	+	351	87198478	-	Saro_0453	-	xylose isomerase-like TIM barrel
453	 62.25	0	497246..499669	+	807	87198479	-	Saro_0454	-	TonB-dependent receptor
454	 65.69	0	499747..500358	-	203	87198480	-	Saro_0455	-	hypothetical protein
455	 64.81	0	500603..501355	+	250	87198481	-	Saro_0456	-	electron transfer flavoprotein beta-subunit
456	 68.38	0	501355..502287	+	310	87198482	-	Saro_0457	-	electron transfer flavoprotein, alpha subunit
457	 61.35	-1	502433..503392	+	319	87198483	-	Saro_0458	-	hypothetical protein
458	 65.16	0	503393..503857	-	154	87198484	-	Saro_0459	-	GCN5-related N-acetyltransferase
459	 61.15	-1	504045..504479	+	144	87198485	-	Saro_0460	-	hypothetical protein
460	 69.24	+1	504527..505498	-	323	87198486	-	Saro_0461	-	RDD
461	 67.97	0	505498..506568	-	356	87198487	-	Saro_0462	-	hypothetical protein
462	 70.55	+1	506565..507851	-	428	87198488	-	Saro_0463	-	hypothetical protein
463	 68.76	+1	507890..508846	-	318	87198489	-	Saro_0464	-	ATPase AAA_3
464	 69.78	+1	508864..510147	-	427	87198490	-	Saro_0465	-	hypothetical protein
465	 71.97	+2	510144..510803	-	219	87198491	-	Saro_0466	-	hypothetical protein
466	 66.44	0	510856..511746	-	296	87198492	-	Saro_0467	-	prephenate dehydratase
467	 65.99	0	511901..512791	+	296	87198493	-	Saro_0468	-	cytochrome c, class I
468	 67.96	0	512851..513237	-	128	87198494	-	Saro_0469	-	putative transcriptional regulator
469	 69.62	+1	513332..513940	+	202	87198495	-	Saro_0470	-	TrkA-N
470	 69.66	+1	513974..514474	-	166	87198496	-	Saro_0471	-	hypothetical protein
471	 65.47	0	514536..515204	-	222	87198497	-	Saro_0472	-	ribosomal RNA methyltransferase RrmJ/FtsJ
472	 69.65	+1	515201..516508	-	435	87198498	-	Saro_0473	-	Ppx/GppA phosphatase
473	 65.72	0	516979..518454	-	491	87198499	-	Saro_0474	-	sulfatase
474	 66.67	0	518616..519611	-	331	87198500	-	Saro_0475	-	aldo/keto reductase
475	 68.03	0	519733..520689	+	318	87198501	-	Saro_0476	-	LysR family transcriptional regulator
476	 61.32	-1	520686..521564	+	292	87198502	-	Saro_0477	-	hypothetical protein
477	 69.36	+1	521569..522087	+	172	87198503	-	Saro_0478	-	GCN5-related N-acetyltransferase
478	 71.47	+1	522072..522821	-	249	87198504	-	Saro_0479	-	phosphomethylpyrimidine kinase
479	 67.11	0	522823..523047	-	74	87198505	-	Saro_0480	-	hypothetical protein
480	 66.59	0	523049..524386	-	445	87198506	-	Saro_0481	-	phosphoglucosamine mutase
481	 69.30	+1	524457..525746	+	429	87198507	-	Saro_0482	-	sodium:dicarboxylate symporter
482	 64.72	0	525874..526488	+	204	87198508	-	Saro_0483	-	superoxide dismutase
483	 66.50	0	526476..527696	-	406	87198509	-	Saro_0484	-	hypothetical protein
484	 68.31	0	527833..528441	-	202	87198510	-	Saro_0485	-	sigma-24 (FecI-like)
485	 57.47	-2	528434..528607	-	57	87198511	-	Saro_0486	-	hypothetical protein
486	 65.23	0	528858..530525	+	555	87198512	-	Saro_0487	-	signal transduction histidine kinase
487	 66.04	0	530563..531360	-	265	87198513	-	Saro_0488	-	two-component response regulator
488	 64.44	0	531406..531810	-	134	87198514	-	Saro_0489	-	response regulator receiver domain-containing protein
489	 66.67	0	531932..532702	+	256	87198515	-	Saro_0490	-	CRP/FNR family transcriptional regulator
490	 68.19	0	532919..533377	-	152	87198516	-	Saro_0491	-	response regulator receiver domain-containing protein
491	 62.63	0	533476..534690	-	404	87198517	-	Saro_0492	-	hypothetical protein
492	 65.86	0	534777..535892	+	371	87198518	-	Saro_0493	-	fatty acid desaturase
493	 68.64	+1	535912..536418	-	168	87198519	-	Saro_0494	-	rhodanese-like protein
494	 64.31	0	536474..537574	-	366	87198520	-	Saro_0495	-	permease YjgP/YjgQ
495	 64.74	0	537564..538808	-	414	87198521	-	Saro_0496	-	permease YjgP/YjgQ
496	 62.73	0	539046..539477	+	143	87198522	-	Saro_0497	-	hypothetical protein
497	 62.20	0	539558..539938	-	126	87198523	-	Saro_0498	-	ATP-dependent Clp protease adaptor protein ClpS
498	 64.01	0	540114..540980	-	288	87198524	-	Saro_0499	-	phasin
499	 64.83	0	541124..543028	-	634	87198525	-	Saro_0500	-	Poly(R)-hydroxyalkanoic acid synthase, class I
500	 64.01	0	543116..544357	+	413	87198526	-	Saro_0501	-	aminotransferase
501	 65.68	0	544498..545304	+	268	87198527	-	Saro_0502	-	enoyl-CoA hydratase
502	 69.05	+1	545339..546724	+	461	87198528	-	Saro_0503	-	ribonuclease II
503	 58.27	-2	547191..547607	+	138	87198529	-	Saro_0504	-	Excalibur
504	 62.53	0	548331..548717	+	128	87198530	-	Saro_0505	-	hypothetical protein
505	 62.31	0	548866..549255	-	129	87198531	-	Saro_0506	-	IS4 family transposase
506	 62.93	0	549276..549623	-	115	87198532	-	Saro_0507	-	IS5 family transposase
507	 59.46	-1	550240..550572	-	110	87198533	-	Saro_0509	-	ferredoxin
508	 62.15	0	550605..552242	-	545	87198534	-	Saro_0510	-	cyclohexanone monooxygenase
509	 66.15	0	552466..553236	-	256	87198535	-	Saro_0511	-	enoyl-CoA hydratase/isomerase
510	 63.05	0	553249..553995	-	248	87198536	-	Saro_0512	-	short-chain dehydrogenase/reductase SDR
511	 65.19	0	554310..555392	+	360	87198537	-	Saro_0513	-	alcohol dehydrogenase, zinc-containing
512	 62.40	0	555434..556699	+	421	87198538	-	Saro_0514	-	cytochrome P450
513	 62.73	0	556696..557178	+	160	87198539	-	Saro_0515	-	flavin reductase-like, FMN-binding
514	 61.90	-1	557175..557762	-	195	87198540	-	Saro_0516	-	TetR family transcriptional regulator
515	 63.03	0	557813..558748	-	311	87198541	-	Saro_0517	-	gluconolactonase
516	 63.58	0	558851..559693	-	280	87198542	-	Saro_0518	-	enoyl-CoA hydratase/isomerase
517	 62.65	0	559882..561576	+	564	87198543	-	Saro_0519	-	AMP-dependent synthetase and ligase
518	 63.18	0	561623..562768	+	381	87198544	-	Saro_0520	-	GTP cyclohydrolase II
519	 61.56	-1	562789..563454	-	221	87198545	-	Saro_0521	-	TetR family transcriptional regulator
520	 60.27	-1	563635..564759	+	374	87198546	-	Saro_0522	-	luciferase-like
521	 60.90	-1	564837..567248	+	803	87198547	-	Saro_0523	-	TonB-dependent receptor
522	 59.20	-1	567592..567765	-	57	87198548	-	Saro_0524	-	hypothetical protein
523	 57.69	-2	567941..568564	-	207	87198549	-	Saro_0525	-	hypothetical protein
524	 58.03	-2	568674..570248	+	524	87198550	-	Saro_0526	-	recombinase
525	 58.78	-2	570248..571147	+	299	87198551	-	Saro_0527	-	ParB family protein
526	 56.67	-2	571140..572099	+	319	87198552	-	Saro_0528	-	RepB plasmid partition
527	 56.51	-2	572780..573094	-	104	87198553	-	Saro_0529	-	hypothetical protein
528	 63.18	0	573909..575255	+	448	87198554	-	Saro_0530	-	hypothetical protein
529	 65.01	0	575338..576366	-	342	87198555	-	Saro_0531	-	acyltransferase 3
530	 62.12	0	576491..577765	-	424	87198556	-	Saro_0532	-	TetR family transcriptional regulator
531	 64.20	0	577801..580191	-	796	87198557	-	Saro_0533	-	sulfatase
532	 65.61	0	580304..582577	+	757	87198558	-	Saro_0534	-	sulfatase
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.