IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
397	 55.26	-2	435786..436460	+	224	87198423	-	Saro_0398	-	TrkA-N
398	 62.94	0	436525..439260	-	911	87198424	-	Saro_0399	-	ATPase, E1-E2 type
399	 63.59	0	439359..440204	-	281	87198425	-	Saro_0400	-	hypothetical protein
400	 64.35	0	440475..441857	+	460	87198426	-	Saro_0401	-	hypothetical protein
401	 59.56	-1	441880..442653	+	257	87198427	-	Saro_0402	-	SPFH domain-containing protein/band 7 family protein
402	 60.42	-1	442737..443264	+	175	87198428	-	Saro_0403	-	hypothetical protein
403	 55.38	-2	443284..443673	+	129	87198429	-	Saro_0404	-	hypothetical protein
404	 61.21	-1	443690..445009	-	439	87198430	-	Saro_0405	-	di- and tricarboxylate transporters-like
405	 62.41	0	445149..446018	+	289	87198431	-	Saro_0406	-	hypothetical protein
406	 61.35	-1	446037..447314	-	425	87198432	-	Saro_0407	-	Na+/H+ antiporter NhaA
407	 65.36	0	447796..448563	+	255	87198433	-	Saro_0408	-	hypothetical protein
408	 67.61	0	448658..449185	+	175	87198434	-	Saro_0409	-	hypothetical protein
409	 67.04	0	449193..450791	-	532	87198435	-	Saro_0410	-	L-aspartate oxidase
410	 64.09	0	451251..452258	-	335	87198436	-	Saro_0411	-	ABC transporter related
411	 64.68	0	452294..452494	+	66	87198437	-	Saro_0412	-	hypothetical protein
412	 67.15	0	452563..454002	+	479	87198438	-	Saro_0413	-	peptidase U62, modulator of DNA gyrase
413	 67.92	0	454077..454475	+	132	87198439	-	Saro_0414	-	glutathione-dependent formaldehyde-activating, GFA
414	 66.43	0	454543..454965	+	140	87198440	-	Saro_0415	-	hypothetical protein
415	 65.95	0	455007..455561	+	184	87198441	-	Saro_0416	-	GCN5-related N-acetyltransferase
416	 66.04	0	455622..456746	+	374	87198442	ispG	Saro_0417	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
417	 70.55	+1	456748..457443	-	231	87198443	-	Saro_0418	-	hypothetical protein
418	 63.40	0	457574..458338	+	254	87198444	-	Saro_0419	-	hypothetical protein
419	 63.25	0	458344..458694	+	116	87198445	-	Saro_0420	-	hypothetical protein
420	 65.62	0	458696..459172	+	158	87198446	-	Saro_0421	-	crossover junction endodeoxyribonuclease RuvC
421	 67.80	0	459269..459883	+	204	87198447	-	Saro_0422	-	Holliday junction DNA helicase RuvA
422	 66.96	0	459887..460915	+	342	87198448	ruvB	Saro_0423	-	Holliday junction DNA helicase B
423	 69.12	+1	461134..462072	+	312	87198449	-	Saro_0424	-	hypothetical protein
424	 64.38	0	462232..464904	-	890	87198450	-	Saro_0425	-	aconitase
425	 67.45	0	465142..466032	-	296	87198451	-	Saro_0426	-	hypothetical protein
426	 66.67	0	466174..467673	+	499	87198452	-	Saro_0427	-	hypothetical protein
427	 66.99	0	467869..468492	-	207	87198453	-	Saro_0428	-	twin-arginine translocation pathway signal
428	 65.48	0	468544..469047	-	167	87198454	-	Saro_0429	-	GCN5-related N-acetyltransferase
429	 60.76	-1	469082..469318	-	78	87198455	-	Saro_0430	-	hypothetical protein
430	 64.72	0	469415..469723	-	102	87198456	-	Saro_0431	-	hypothetical protein
431	 67.49	0	469798..471252	+	484	87198457	-	Saro_0432	-	pyruvate kinase
432	 68.23	0	471309..471884	-	191	87198458	-	Saro_0433	-	hypothetical protein
433	 71.69	+1	471997..472533	+	178	87198459	-	Saro_0434	-	thiamine monophosphate synthase
434	 66.92	0	472628..475009	+	793	87198460	-	Saro_0435	-	DNA translocase FtsK
435	 67.17	0	475017..475415	-	132	87198461	-	Saro_0436	-	thioesterase-like
436	 64.88	0	475412..477487	-	691	87198462	-	Saro_0437	-	oligopeptidase B
437	 68.33	0	477544..479349	+	601	87198463	-	Saro_0438	-	peptidase M24
438	 66.12	0	479405..479773	+	122	87198464	-	Saro_0439	-	glyoxalase/bleomycin resistance protein/dioxygenase
439	 64.46	0	480001..480681	+	226	87198465	-	Saro_0440	-	calcium-binding EF-hand protein
440	 63.96	0	480687..481424	+	245	87198466	-	Saro_0441	-	two component transcriptional regulator
441	 68.96	+1	481428..482825	+	465	87198467	-	Saro_0442	-	periplasmic sensor signal transduction histidine kinase
442	 66.70	0	482963..485629	+	888	87198468	-	Saro_0443	-	peptidase M1, membrane alanine aminopeptidase
443	 66.22	0	485699..487273	-	524	87198469	-	Saro_0444	-	protein of unknown function DUF853, NPT hydrolase putative
444	 68.74	+1	487393..489180	+	595	87198470	-	Saro_0445	-	para-aminobenzoate synthase, component I
445	 68.21	0	489185..490354	+	389	87198471	-	Saro_0446	-	aminotransferase
446	 66.82	0	490351..491019	+	222	87198472	-	Saro_0447	-	pseudouridylate synthase
447	 66.91	0	491021..491434	+	137	87198473	-	Saro_0448	-	class I peptide chain release factor domain-containing protein
448	 67.68	0	491483..492766	-	427	87198474	-	Saro_0449	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
449	 63.90	0	492864..493802	+	312	87198475	-	Saro_0450	-	UDP-glucose pyrophosphorylase
450	 66.07	0	493816..494490	-	224	87198476	-	Saro_0451	-	TetR family transcriptional regulator
451	 67.56	0	494678..495793	+	371	87198477	-	Saro_0452	-	oxidoreductase-like
452	 65.44	0	495805..496860	+	351	87198478	-	Saro_0453	-	xylose isomerase-like TIM barrel
453	 62.25	0	497246..499669	+	807	87198479	-	Saro_0454	-	TonB-dependent receptor
454	 65.69	0	499747..500358	-	203	87198480	-	Saro_0455	-	hypothetical protein
455	 64.81	0	500603..501355	+	250	87198481	-	Saro_0456	-	electron transfer flavoprotein beta-subunit
456	 68.38	0	501355..502287	+	310	87198482	-	Saro_0457	-	electron transfer flavoprotein, alpha subunit
457	 61.35	-1	502433..503392	+	319	87198483	-	Saro_0458	-	hypothetical protein
458	 65.16	0	503393..503857	-	154	87198484	-	Saro_0459	-	GCN5-related N-acetyltransferase
459	 61.15	-1	504045..504479	+	144	87198485	-	Saro_0460	-	hypothetical protein
460	 69.24	+1	504527..505498	-	323	87198486	-	Saro_0461	-	RDD
461	 67.97	0	505498..506568	-	356	87198487	-	Saro_0462	-	hypothetical protein
462	 70.55	+1	506565..507851	-	428	87198488	-	Saro_0463	-	hypothetical protein
463	 68.76	+1	507890..508846	-	318	87198489	-	Saro_0464	-	ATPase AAA_3
464	 69.78	+1	508864..510147	-	427	87198490	-	Saro_0465	-	hypothetical protein
465	 71.97	+2	510144..510803	-	219	87198491	-	Saro_0466	-	hypothetical protein
466	 66.44	0	510856..511746	-	296	87198492	-	Saro_0467	-	prephenate dehydratase
467	 65.99	0	511901..512791	+	296	87198493	-	Saro_0468	-	cytochrome c, class I
468	 67.96	0	512851..513237	-	128	87198494	-	Saro_0469	-	putative transcriptional regulator
469	 69.62	+1	513332..513940	+	202	87198495	-	Saro_0470	-	TrkA-N
470	 69.66	+1	513974..514474	-	166	87198496	-	Saro_0471	-	hypothetical protein
471	 65.47	0	514536..515204	-	222	87198497	-	Saro_0472	-	ribosomal RNA methyltransferase RrmJ/FtsJ
472	 69.65	+1	515201..516508	-	435	87198498	-	Saro_0473	-	Ppx/GppA phosphatase
473	 65.72	0	516979..518454	-	491	87198499	-	Saro_0474	-	sulfatase
474	 66.67	0	518616..519611	-	331	87198500	-	Saro_0475	-	aldo/keto reductase
475	 68.03	0	519733..520689	+	318	87198501	-	Saro_0476	-	LysR family transcriptional regulator
476	 61.32	-1	520686..521564	+	292	87198502	-	Saro_0477	-	hypothetical protein
477	 69.36	+1	521569..522087	+	172	87198503	-	Saro_0478	-	GCN5-related N-acetyltransferase
478	 71.47	+1	522072..522821	-	249	87198504	-	Saro_0479	-	phosphomethylpyrimidine kinase
479	 67.11	0	522823..523047	-	74	87198505	-	Saro_0480	-	hypothetical protein
480	 66.59	0	523049..524386	-	445	87198506	-	Saro_0481	-	phosphoglucosamine mutase
481	 69.30	+1	524457..525746	+	429	87198507	-	Saro_0482	-	sodium:dicarboxylate symporter
482	 64.72	0	525874..526488	+	204	87198508	-	Saro_0483	-	superoxide dismutase
483	 66.50	0	526476..527696	-	406	87198509	-	Saro_0484	-	hypothetical protein
484	 68.31	0	527833..528441	-	202	87198510	-	Saro_0485	-	sigma-24 (FecI-like)
485	 57.47	-2	528434..528607	-	57	87198511	-	Saro_0486	-	hypothetical protein
486	 65.23	0	528858..530525	+	555	87198512	-	Saro_0487	-	signal transduction histidine kinase
487	 66.04	0	530563..531360	-	265	87198513	-	Saro_0488	-	two-component response regulator
488	 64.44	0	531406..531810	-	134	87198514	-	Saro_0489	-	response regulator receiver domain-containing protein
489	 66.67	0	531932..532702	+	256	87198515	-	Saro_0490	-	CRP/FNR family transcriptional regulator
490	 68.19	0	532919..533377	-	152	87198516	-	Saro_0491	-	response regulator receiver domain-containing protein
491	 62.63	0	533476..534690	-	404	87198517	-	Saro_0492	-	hypothetical protein
492	 65.86	0	534777..535892	+	371	87198518	-	Saro_0493	-	fatty acid desaturase
493	 68.64	+1	535912..536418	-	168	87198519	-	Saro_0494	-	rhodanese-like protein
494	 64.31	0	536474..537574	-	366	87198520	-	Saro_0495	-	permease YjgP/YjgQ
495	 64.74	0	537564..538808	-	414	87198521	-	Saro_0496	-	permease YjgP/YjgQ
496	 62.73	0	539046..539477	+	143	87198522	-	Saro_0497	-	hypothetical protein
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.